Rmu_sc0006576.1_g000018

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006576.1
OG0000122
Physical Location & Seq
Forward (+)
109703 .. 110332
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006576.1_g000018.1.cds

Sequence Viewer

Length: 630 bp
atgacggatctccgaaaacccaagcagtataaaaatattctttcatggtttacaagtgatactccatcaagtggtagtgggaatgaaatcgggagtgggagtgggaatgaaatcgggagtgggagtgggagtgggagcagaaatgtgactgagaattatgtgaatgatgttcctataaatgattatccacctattccactagaagagtgtcgtgatgaaagaattgagatagaagaaaattttgatgttacttctcttgagcgtgatcctggaatacgacttccaatatgcaagtatcatttgaatgagcgtgacaatattcgaagagcttatgtggtcttaggaccgtatcaacctcagttaagcaagtatccatcttcttttgatggaggtcaaggtcaaaaatttaatgccaaatggttcaaagattggccttggattgagtattccgaagagttagacaaagcatattgcttcccgtgtttcctctttgatagttatccatcccaccatccagcattcactgagtatgggtttcaaggttggaagaatgttatgtccaaacagtctggtattcttgctcacatgggaggcataaatttcccacatagtgctgccatgctcaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

209

Amino Acids

23.72

Weight (kDa)

5.4

Isoelectric Point (pI)

56.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 71
AclWI GGATC 2 cut(s) 15, 260
AcsI RAATTY 3 cut(s) 238, 404, 598
AdeI CACNNNGTG 1 cut(s) 611
AfiI CCNNNNNNNGG 1 cut(s) 71
AgsI TTSAA 3 cut(s) 304, 424, 539
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
AlwI GGATC 2 cut(s) 15, 260
AoxI GGCC 1 cut(s) 431
ApeKI GCWGC 1 cut(s) 614
ApoI RAATTY 3 cut(s) 238, 404, 598
AspS9I GGNCC 1 cut(s) 344
AsuII TTCGAA 1 cut(s) 322
AvaII GGWCC 1 cut(s) 344
BbvI GCAGC 1 cut(s) 601
BccI CCATC 5 cut(s) 73, 380, 382, 511, 519
BciT130I CCWGG 1 cut(s) 270
BciVI GTATCC 1 cut(s) 381
BfaI CTAG 1 cut(s) 200
BfuI GTATCC 1 cut(s) 381
BisI GCNGC 1 cut(s) 615
BlsI GCNGC 1 cut(s) 616
Bme1390I CCNGG 1 cut(s) 270
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 344
BmrFI CCNGG 1 cut(s) 270
Bpu14I TTCGAA 1 cut(s) 322
BpuEI CTTGAG 2 cut(s) 278, 608
BsaBI GATNNNNATC 1 cut(s) 498
BsaJI CCNNGG 1 cut(s) 434
BsaXI ACNNNNNCTCC 6 cut(s) 85, 109, 115, 115, 139, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 434
BseGI GGATG 2 cut(s) 503, 511
BseJI GATNNNNATC 1 cut(s) 498
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 3 cut(s) 141, 371, 516
BseXI GCAGC 1 cut(s) 601
BshFI GGCC 1 cut(s) 433
BslI CCNNNNNNNGG 1 cut(s) 71
BsmI GAATGC 1 cut(s) 518
BsnI GGCC 1 cut(s) 433
Bsp119I TTCGAA 1 cut(s) 322
Bsp143I GATC 2 cut(s) 7, 265
BspANI GGCC 1 cut(s) 433
BspCNI CTCAG 3 cut(s) 142, 370, 517
BspPI GGATC 2 cut(s) 15, 260
BspQI GCTCTTC 1 cut(s) 319
BspT104I TTCGAA 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 434
BssMI GATC 2 cut(s) 7, 265
BssT1I CCWWGG 1 cut(s) 434
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 2 cut(s) 348, 567
Bst6I CTCTTC 3 cut(s) 198, 319, 447
BstBI TTCGAA 1 cut(s) 322
BstDEI CTNAG 4 cut(s) 150, 340, 357, 525
BstF5I GGATG 2 cut(s) 503, 511
BstKTI GATC 2 cut(s) 10, 268
BstMBI GATC 2 cut(s) 7, 265
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 601
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuI GTATCC 1 cut(s) 381
BsuRI GGCC 1 cut(s) 433
BtsCI GGATG 2 cut(s) 503, 511
BtsIMutI CAGTG 1 cut(s) 522
Cfr13I GGNCC 1 cut(s) 344
CviAII CATG 3 cut(s) 45, 586, 619
CviJI RGCY 2 cut(s) 329, 433
CviKI_1 RGCY 2 cut(s) 329, 433
DdeI CTNAG 4 cut(s) 150, 340, 357, 525
DpnI GATC 2 cut(s) 9, 267
DpnII GATC 2 cut(s) 7, 265
DraIII CACNNNGTG 1 cut(s) 611
Eam1104I CTCTTC 3 cut(s) 198, 319, 447
EarI CTCTTC 3 cut(s) 198, 319, 447
Eco130I CCWWGG 1 cut(s) 434
Eco47I GGWCC 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 434
FaeI CATG 3 cut(s) 48, 589, 622
FatI CATG 3 cut(s) 44, 585, 618
Fnu4HI GCNGC 1 cut(s) 615
FokI GGATG 2 cut(s) 490, 498
Fsp4HI GCNGC 1 cut(s) 615
FspBI CTAG 1 cut(s) 200
GluI GCNGC 1 cut(s) 615
HaeIII GGCC 1 cut(s) 433
Hin1II CATG 3 cut(s) 48, 589, 622
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 2 cut(s) 14, 451
Hpy188III TCNNGA 4 cut(s) 91, 115, 212, 257
Hpy8I GTNNAC 1 cut(s) 51
HpyCH4III ACNGT 2 cut(s) 348, 567
HpyCH4V TGCA 1 cut(s) 291
HpyF3I CTNAG 4 cut(s) 150, 340, 357, 525
Hsp92II CATG 3 cut(s) 48, 589, 622
Kzo9I GATC 2 cut(s) 7, 265
LguI GCTCTTC 1 cut(s) 319
LmnI GCTCC 1 cut(s) 135
LpnPI CCDG 4 cut(s) 255, 282, 528, 555
Lsp1109I GCAGC 1 cut(s) 601
MaeI CTAG 1 cut(s) 200
MaeIII GTNAC 3 cut(s) 145, 247, 311
MalI GATC 2 cut(s) 9, 267
MboI GATC 2 cut(s) 7, 265
MboII GAAGA 6 cut(s) 215, 245, 336, 369, 464, 559
MflI RGATCY 1 cut(s) 7
MluCI AATT 5 cut(s) 154, 222, 238, 404, 598
MmeI TCCRAC 1 cut(s) 524
MnlI CCTC 4 cut(s) 366, 383, 497, 584
MseI TTAA 2 cut(s) 362, 408
MslI CAYNNNNRTG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 270
Mva1269I GAATGC 1 cut(s) 518
MvaI CCWGG 1 cut(s) 270
NdeII GATC 2 cut(s) 7, 265
NlaIII CATG 3 cut(s) 48, 589, 622
NmuCI GTSAC 2 cut(s) 145, 311
NspV TTCGAA 1 cut(s) 322
PciSI GCTCTTC 1 cut(s) 319
PctI GAATGC 1 cut(s) 518
PflMI CCANNNNNTGG 1 cut(s) 71
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 1 cut(s) 616
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PspPI GGNCC 1 cut(s) 344
PsuI RGATCY 1 cut(s) 7
RseI CAYNNNNRTG 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 319
SaqAI TTAA 2 cut(s) 362, 408
SatI GCNGC 1 cut(s) 615
Sau3AI GATC 2 cut(s) 7, 265
Sau96I GGNCC 1 cut(s) 344
ScrFI CCNGG 1 cut(s) 270
SetI ASST 6 cut(s) 193, 331, 358, 394, 400, 544
SfuI TTCGAA 1 cut(s) 322
SinI GGWCC 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 2 cut(s) 257, 623
SmoI CTYRAG 2 cut(s) 257, 623
Sse9I AATT 5 cut(s) 154, 222, 238, 404, 598
SspI AATATT 2 cut(s) 37, 319
SspMI CTAG 1 cut(s) 200
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 1 cut(s) 434
TaaI ACNGT 2 cut(s) 348, 567
TaqI TCGA 1 cut(s) 322
TasI AATT 5 cut(s) 154, 222, 238, 404, 598
Tru1I TTAA 2 cut(s) 362, 408
Tru9I TTAA 2 cut(s) 362, 408
TscAI CASTG 1 cut(s) 529
TseFI GTSAC 2 cut(s) 145, 311
TseI GCWGC 1 cut(s) 614
Tsp45I GTSAC 2 cut(s) 145, 311
TspDTI ATGAA 4 cut(s) 33, 99, 123, 231
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 1 cut(s) 529
Van91I CCANNNNNTGG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 3 cut(s) 238, 404, 598
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.