Rmu_sc0003221.1_g000053

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003221.1
OG0000122
Physical Location & Seq
Forward (+)
235368 .. 235949
582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003221.1_g000053.1.cds

Sequence Viewer

Length: 582 bp
atgtattctcttactaatgataaagcttttaatctaccttgttttctttttaataagcccaccggccattctggccacaaagctttcactattgagggatttcaaaattggaagaaaataagagatggaaagggttgtgcttttttgagtcatatgggtaaagattctgactcttttcataagaatgctataagagcctgtgacaacttgatgaagcaacctcagcatatgcagaatgttgttgaaaattatacttcaaaacaaattgcagacaaccgtctacgagtcaaaacttcaattgaagcagttcgatggcttgcatttcaaggttgtgcttttagaggtcatgatgaaagcgttgattcaatcaatcctggtaatttcgtgaaactcttagaattcactatgccagaaaagcaatcagacgatagagaagatctatcgtctgatgaaaaaaatttatgttttctagtatggtgctgtctcttgggggtatcagatgacagacttcctccgtcgtcttatttatcagacgacagaaatttgttaggtcgtctgttgtctgatgaaatcaagatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

193

Amino Acids

22.01

Weight (kDa)

6.58

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 280
AcoI YGGCCR 2 cut(s) 64, 73
AcsI RAATTY 3 cut(s) 398, 457, 541
AgsI TTSAA 7 cut(s) 104, 245, 258, 297, 302, 326, 366
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 2 cut(s) 26, 83
AluI AGCT 2 cut(s) 26, 83
Alw26I GTCTC 1 cut(s) 488
AoxI GGCC 2 cut(s) 64, 73
ApoI RAATTY 3 cut(s) 398, 457, 541
Asp700I GAANNNNTTC 1 cut(s) 306
BalI TGGCCA 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 222
BccI CCATC 2 cut(s) 119, 306
BciT130I CCWGG 1 cut(s) 375
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 1 cut(s) 470
BglI GCCNNNNNGGC 1 cut(s) 72
BglII AGATCT 1 cut(s) 436
Bme1390I CCNGG 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 375
BoxI GACNNNNGTC 1 cut(s) 276
Bpu10I CCTNAGC 1 cut(s) 222
Bse118I RCCGGY 1 cut(s) 62
BseBI CCWGG 1 cut(s) 375
BseMII CTCAG 1 cut(s) 236
BshFI GGCC 2 cut(s) 66, 75
BsiSI CCGG 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 488
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 2 cut(s) 66, 75
Bsp143I GATC 1 cut(s) 436
BspANI GGCC 2 cut(s) 66, 75
BspCNI CTCAG 1 cut(s) 235
BspHI TCATGA 1 cut(s) 346
BsrFI RCCGGY 1 cut(s) 62
BssAI RCCGGY 1 cut(s) 62
BssMI GATC 1 cut(s) 436
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 222, 394
BstKTI GATC 1 cut(s) 439
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 1 cut(s) 436
BstMWI GCNNNNNNNGC 4 cut(s) 72, 194, 223, 415
BstNI CCWGG 1 cut(s) 375
BstPAI GACNNNNGTC 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 373
BstX2I RGATCY 1 cut(s) 436
BstYI RGATCY 1 cut(s) 436
BsuRI GGCC 2 cut(s) 66, 75
Cac8I GCNNGC 1 cut(s) 318
CciI TCATGA 1 cut(s) 346
Cfr10I RCCGGY 1 cut(s) 62
CviAII CATG 1 cut(s) 347
CviJI RGCY 7 cut(s) 26, 58, 66, 75, 83, 197, 316
CviKI_1 RGCY 7 cut(s) 26, 58, 66, 75, 83, 197, 316
DdeI CTNAG 2 cut(s) 222, 394
DpnI GATC 1 cut(s) 438
DpnII GATC 1 cut(s) 436
EaeI YGGCCR 2 cut(s) 64, 73
EcoRI GAATTC 1 cut(s) 398
EcoRII CCWGG 1 cut(s) 373
FaeI CATG 1 cut(s) 350
FatI CATG 1 cut(s) 346
FauNDI CATATG 2 cut(s) 153, 228
FblI GTMKAC 1 cut(s) 280
FspBI CTAG 1 cut(s) 470
HaeIII GGCC 2 cut(s) 66, 75
HapII CCGG 1 cut(s) 63
Hin1II CATG 1 cut(s) 350
HindIII AAGCTT 2 cut(s) 24, 81
HinfI GANTC 5 cut(s) 148, 164, 170, 285, 362
HpaII CCGG 1 cut(s) 63
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 6 cut(s) 169, 424, 448, 499, 532, 565
Hpy188III TCNNGA 3 cut(s) 347, 385, 574
Hpy8I GTNNAC 1 cut(s) 281
Hpy99I CGWCG 1 cut(s) 520
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 3 cut(s) 232, 269, 320
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 194, 223, 415
HpyF3I CTNAG 2 cut(s) 222, 394
Hsp92II CATG 1 cut(s) 350
Kzo9I GATC 1 cut(s) 436
LpnPI CCDG 6 cut(s) 57, 76, 211, 360, 387, 423
MaeI CTAG 1 cut(s) 470
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 438
MboI GATC 1 cut(s) 436
MboII GAAGA 2 cut(s) 124, 446
MfeI CAATTG 1 cut(s) 297
MflI RGATCY 1 cut(s) 436
MlsI TGGCCA 1 cut(s) 75
MluCI AATT 8 cut(s) 106, 247, 264, 297, 379, 398, 457, 541
MluNI TGGCCA 1 cut(s) 75
MlyI GAGTC 3 cut(s) 157, 164, 294
MnlI CCTC 4 cut(s) 88, 231, 335, 522
Mox20I TGGCCA 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 306
MscI TGGCCA 1 cut(s) 75
MseI TTAA 2 cut(s) 30, 51
MslI CAYNNNNRTG 1 cut(s) 183
Msp20I TGGCCA 1 cut(s) 75
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 1 cut(s) 375
MunI CAATTG 1 cut(s) 297
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 4 cut(s) 72, 194, 223, 415
NdeI CATATG 2 cut(s) 153, 228
NdeII GATC 1 cut(s) 436
NlaIII CATG 1 cut(s) 350
NmuCI GTSAC 1 cut(s) 200
PagI TCATGA 1 cut(s) 346
PctI GAATGC 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 164, 362
PleI GAGTC 3 cut(s) 156, 164, 293
PpsI GAGTC 3 cut(s) 156, 164, 293
PshAI GACNNNNGTC 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
PsuI RGATCY 1 cut(s) 436
RseI CAYNNNNRTG 1 cut(s) 183
SaqAI TTAA 2 cut(s) 30, 51
Sau3AI GATC 1 cut(s) 436
SchI GAGTC 3 cut(s) 157, 164, 294
ScrFI CCNGG 1 cut(s) 375
SetI ASST 7 cut(s) 28, 40, 85, 223, 331, 346, 553
SfiI GGCCNNNNNGGCC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 183
Sse9I AATT 8 cut(s) 106, 247, 264, 297, 379, 398, 457, 541
SspMI CTAG 1 cut(s) 470
StyD4I CCNGG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 278
TaqI TCGA 1 cut(s) 310
TasI AATT 8 cut(s) 106, 247, 264, 297, 379, 398, 457, 541
TfiI GAWTC 2 cut(s) 164, 362
Tru1I TTAA 2 cut(s) 30, 51
Tru9I TTAA 2 cut(s) 30, 51
TseFI GTSAC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 5 cut(s) 167, 227, 366, 465, 582
TspGWI ACGGA 1 cut(s) 504
XapI RAATTY 3 cut(s) 398, 457, 541
XmiI GTMKAC 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.