Rmu_sc0000929.1_g000014

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000929.1
OG0000122
Physical Location & Seq
Reverse (-)
43919 .. 46168
2250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000929.1_g000014.1.cds

Sequence Viewer

Length: 621 bp
atggctgctggaatattgctgagagaggatgacagtgagaacagacacaagataaaggagagactcaggaggacaagattaaagaacacgatcacaacaaaagctgtggagtgggacacggaatggtccaagaaccctgatccatctggtcgtgctgcacttggtgtacatgcagctgcgtatgaggaatccaaagatgtgaagaccggaagtcttgcgagtgactccacagaaacttgctacagccgcgacttggactcttggactcttggagcacagaggagcagagcaatcctactcagcgacccggcgatctgcaaaagtgcaaggctggaagcctggaaccagcaacccatctctggtagtctggtctccgagctccccaccgccaccagcccaccagcatcccgtctggctgtctccgtggaccgtgcaaccactgaaagagcattttcagctatgaacattgttaagaataaacttagaaataagatggacgatgagtttcttggtgattgtatgatccttcacattgagaaagagtatgttgaatctattgacaatgatgaggtgattaaagagtttgaagtttcatgtactcgtagggttagatttacttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

206

Amino Acids

23.12

Weight (kDa)

6.01

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 249
AciI CCGC 2 cut(s) 247, 387
AclWI GGATC 2 cut(s) 134, 517
AdeI CACNNNGTG 1 cut(s) 164
AfaI GTAC 2 cut(s) 168, 598
AfiI CCNNNNNNNGG 2 cut(s) 253, 359
AgsI TTSAA 2 cut(s) 551, 587
AhdI GACNNNNNGTC 1 cut(s) 210
AjnI CCWGG 1 cut(s) 338
AluBI AGCT 4 cut(s) 104, 176, 379, 458
AluI AGCT 4 cut(s) 104, 176, 379, 458
Alw21I GWGCWC 2 cut(s) 277, 381
Alw26I GTCTC 3 cut(s) 55, 376, 424
AlwI GGATC 2 cut(s) 134, 517
ApeKI GCWGC 4 cut(s) 5, 155, 173, 176
AspS9I GGNCC 2 cut(s) 126, 427
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 2 cut(s) 524, 583
AvaII GGWCC 2 cut(s) 126, 427
BanII GRGCYC 1 cut(s) 381
BbsI GAAGAC 1 cut(s) 209
Bbv12I GWGCWC 2 cut(s) 277, 381
BbvI GCAGC 3 cut(s) 142, 163, 185
BccI CCATC 3 cut(s) 151, 362, 487
BciT130I CCWGG 1 cut(s) 340
BcnI CCSGG 1 cut(s) 308
BcoDI GTCTC 3 cut(s) 55, 376, 424
BfmI CTRYAG 1 cut(s) 241
BisI GCNGC 5 cut(s) 6, 156, 174, 177, 247
BlsI GCNGC 5 cut(s) 7, 157, 175, 178, 248
Bme1390I CCNGG 2 cut(s) 308, 340
Bme18I GGWCC 2 cut(s) 126, 427
BmeRI GACNNNNNGTC 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 126, 427
BmiI GGNNCC 1 cut(s) 344
BmrFI CCNGG 2 cut(s) 308, 340
BmsI GCATC 1 cut(s) 413
BpiI GAAGAC 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 308
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 1 cut(s) 423
BsaWI WCCGGW 1 cut(s) 206
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 359
BseBI CCWGG 1 cut(s) 340
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 2 cut(s) 34, 404
BseLI CCNNNNNNNGG 2 cut(s) 253, 359
BseMII CTCAG 3 cut(s) 11, 79, 313
BseRI GAGGAG 1 cut(s) 295
BseXI GCAGC 3 cut(s) 142, 163, 185
BsgI GTGCAG 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 249
BsiHKAI GWGCWC 2 cut(s) 277, 381
BsiSI CCGG 2 cut(s) 207, 308
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 2 cut(s) 253, 359
BsmAI GTCTC 3 cut(s) 55, 376, 424
BsmFI GGGAC 1 cut(s) 128
Bso31I GGTCTC 1 cut(s) 376
Bsp1286I GDGCHC 2 cut(s) 277, 381
Bsp1407I TGTACA 1 cut(s) 166
Bsp143I GATC 4 cut(s) 90, 139, 312, 522
BspACI CCGC 2 cut(s) 247, 387
BspCNI CTCAG 3 cut(s) 12, 78, 312
BspFNI CGCG 1 cut(s) 249
BspLI GGNNCC 1 cut(s) 344
BspPI GGATC 2 cut(s) 134, 517
BspTNI GGTCTC 1 cut(s) 376
BsrGI TGTACA 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 4 cut(s) 90, 139, 312, 522
Bst2UI CCWGG 1 cut(s) 340
Bst4CI ACNGT 2 cut(s) 35, 431
BstAUI TGTACA 1 cut(s) 166
BstDEI CTNAG 5 cut(s) 20, 65, 299, 482, 618
BstDSI CCRYGG 1 cut(s) 423
BstF5I GGATG 2 cut(s) 34, 404
BstFNI CGCG 1 cut(s) 249
BstKTI GATC 4 cut(s) 93, 142, 315, 525
BstMAI GTCTC 3 cut(s) 55, 376, 424
BstMBI GATC 4 cut(s) 90, 139, 312, 522
BstMWI GCNNNNNNNGC 2 cut(s) 246, 455
BstNI CCWGG 1 cut(s) 340
BstNSI RCATGY 1 cut(s) 173
BstSCI CCNGG 2 cut(s) 306, 338
BstSFI CTRYAG 1 cut(s) 241
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 3 cut(s) 142, 163, 185
BstV2I GAAGAC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 423
BtsCI GGATG 2 cut(s) 34, 404
BtsIMutI CAGTG 2 cut(s) 40, 438
Cfr13I GGNCC 2 cut(s) 126, 427
Csp6I GTAC 2 cut(s) 167, 597
CspCI CAANNNNNGTGG 2 cut(s) 87, 122
CviAII CATG 2 cut(s) 170, 594
CviQI GTAC 2 cut(s) 167, 597
DdeI CTNAG 5 cut(s) 20, 65, 299, 482, 618
DpnI GATC 4 cut(s) 92, 141, 314, 524
DpnII GATC 4 cut(s) 90, 139, 312, 522
DraIII CACNNNGTG 1 cut(s) 164
DriI GACNNNNNGTC 1 cut(s) 210
Eam1105I GACNNNNNGTC 1 cut(s) 210
Ecl136II GAGCTC 1 cut(s) 379
Eco24I GRGCYC 1 cut(s) 381
Eco31I GGTCTC 1 cut(s) 376
Eco47I GGWCC 2 cut(s) 126, 427
Eco53kI GAGCTC 1 cut(s) 379
EcoICRI GAGCTC 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 338
EcoT38I GRGCYC 1 cut(s) 381
FaeI CATG 2 cut(s) 173, 597
FaiI YATR 6 cut(s) 171, 183, 461, 521, 546, 595
FaqI GGGAC 1 cut(s) 128
FatI CATG 2 cut(s) 169, 593
Fnu4HI GCNGC 5 cut(s) 6, 156, 174, 177, 247
FokI GGATG 2 cut(s) 41, 391
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 5 cut(s) 6, 156, 174, 177, 247
GluI GCNGC 5 cut(s) 6, 156, 174, 177, 247
HapII CCGG 2 cut(s) 207, 308
Hin1II CATG 2 cut(s) 173, 597
HinfI GANTC 6 cut(s) 63, 188, 224, 257, 265, 551
HpaII CCGG 2 cut(s) 207, 308
HphI GGTGA 2 cut(s) 524, 583
Hpy166II GTNNAC 2 cut(s) 167, 427
Hpy188I TCNGA 1 cut(s) 376
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 2 cut(s) 167, 427
HpyAV CCTTC 1 cut(s) 536
HpyCH4III ACNGT 2 cut(s) 35, 431
HpyCH4V TGCA 5 cut(s) 158, 173, 318, 326, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 246, 455
HpyF3I CTNAG 5 cut(s) 20, 65, 299, 482, 618
Hsp92II CATG 2 cut(s) 173, 597
Kzo9I GATC 4 cut(s) 90, 139, 312, 522
LmnI GCTCC 3 cut(s) 272, 282, 384
Lsp1109I GCAGC 3 cut(s) 142, 163, 185
LweI GCATC 1 cut(s) 413
MaeIII GTNAC 1 cut(s) 221
MalI GATC 4 cut(s) 92, 141, 314, 524
MboI GATC 4 cut(s) 90, 139, 312, 522
MboII GAAGA 1 cut(s) 214
MhlI GDGCHC 2 cut(s) 277, 381
MlyI GAGTC 4 cut(s) 57, 218, 251, 259
MnlI CCTC 5 cut(s) 19, 63, 178, 273, 562
MseI TTAA 3 cut(s) 80, 471, 576
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 2 cut(s) 207, 308
MspR9I CCNGG 2 cut(s) 308, 340
MvaI CCWGG 1 cut(s) 340
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 246, 455
NciI CCSGG 1 cut(s) 308
NdeII GATC 4 cut(s) 90, 139, 312, 522
NlaIII CATG 2 cut(s) 173, 597
NlaIV GGNNCC 1 cut(s) 344
NmuCI GTSAC 1 cut(s) 221
NspI RCATGY 1 cut(s) 173
PfeI GAWTC 2 cut(s) 188, 551
PkrI GCNGC 5 cut(s) 7, 157, 175, 178, 248
PleI GAGTC 4 cut(s) 57, 218, 251, 259
PpsI GAGTC 4 cut(s) 57, 218, 251, 259
Psp124BI GAGCTC 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 338
PspGI CCWGG 1 cut(s) 338
PspN4I GGNNCC 1 cut(s) 344
PspPI GGNCC 2 cut(s) 126, 427
PvuII CAGCTG 1 cut(s) 176
RsaI GTAC 2 cut(s) 168, 598
RsaNI GTAC 2 cut(s) 167, 597
SacI GAGCTC 1 cut(s) 381
SaqAI TTAA 3 cut(s) 80, 471, 576
SatI GCNGC 5 cut(s) 6, 156, 174, 177, 247
Sau3AI GATC 4 cut(s) 90, 139, 312, 522
Sau96I GGNCC 2 cut(s) 126, 427
SchI GAGTC 4 cut(s) 57, 218, 251, 259
ScrFI CCNGG 2 cut(s) 308, 340
SduI GDGCHC 2 cut(s) 277, 381
SetI ASST 5 cut(s) 106, 178, 381, 460, 573
SfaNI GCATC 1 cut(s) 413
SfcI CTRYAG 1 cut(s) 241
SinI GGWCC 2 cut(s) 126, 427
SsiI CCGC 2 cut(s) 247, 387
SspI AATATT 1 cut(s) 15
SstI GAGCTC 1 cut(s) 381
StyD4I CCNGG 2 cut(s) 306, 338
TaaI ACNGT 2 cut(s) 35, 431
TatI WGTACW 2 cut(s) 166, 596
TauI GCSGC 1 cut(s) 249
TfiI GAWTC 2 cut(s) 188, 551
Tru1I TTAA 3 cut(s) 80, 471, 576
Tru9I TTAA 3 cut(s) 80, 471, 576
TscAI CASTG 2 cut(s) 40, 445
TseFI GTSAC 1 cut(s) 221
TseI GCWGC 4 cut(s) 5, 155, 173, 176
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 2 cut(s) 476, 582
TspGWI ACGGA 2 cut(s) 134, 412
TspRI CASTG 2 cut(s) 40, 445
VpaK11BI GGWCC 2 cut(s) 126, 427
XceI RCATGY 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.