RchiOBHm_Chr5g0023801

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000122
Physical Location & Seq
Forward (+)
18039002 .. 18042817
3816 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30363

Sequence Viewer

Length: 2490 bp
ATGACAGATCACCGGAAACCCAAGAGGTACAAAAATCTTTTGTCATGGTTTACAAGTGGTGCTCCATCAAGTGATAGTGTCGATGAGATTAGAAGTGGGAGTGGGAGTGGGAGTGGGAGTGGGAGTAGAAATGTGACTGAGAAATCTGTTAATGATGTCCCTTTAAACCCTTCACCATCTATTCCACTAGAAGAGTGTCATAATGAAAGAATTGAGAGAGAAGAAAGTTTTGATGTTAGTTCTCTTGAACGTGATCCAGGAATAAGGCGTCCAATATGCAAGTACCCTTTGAATGAGCGTGACAATATTCGAAGAGCTTATGTGGTCTTAGGACCGTATCAACCTCACTTAAGTTTTTACCCATTATCATTTGACGGAGGTCAAGGTCGAAAATTTAATCCTAAGTGGTTCAAAGAATGGCCGTGGCTTGAGTATTCCGCAGAGTTGGACAAAGCATTTTGCTTTCCTTGTTTCTTGTTTGATAGTTTCCCATCTCATCATCCAGCATTTACTGAGCATGGGTTTCAAGGTTGGAAGAATGTTATGTCAAAAAAATCTGGCATTGTCTATCACGTGGGAGGCATAAATTCCCCACATAATATTGCCATGCACAAGTGGGAGTCACTAAGAAACCCATCTAAGCATATTGAAAGAGTGATTAGCACACAATCATCACAAGAAGTAGCAGACAACCGACTCCGGCTTATTACTACTATAGAGAGTGTAAGGTTGTTGGCACGCCAAGGTTGTGCTTTTAGAGGCCATGATGAATCGGTTAATTCATCCAATGGTGGCAATTTCAATGCGGTTGTGGATTCCTTTGGAAGAATGAATATGGATGTTCGCAGAGTCTTACAAAATGCTCCTGGTAATGCCAAATATATTTCTCCCCTTATTCAAAAACAATTTCTAAATATACTTGGTAACAAAGTTAGAACCAAGATTCGGGAGGAAGTGGGAGATGCCAAATTTTGTATCCTTGTTGATGAAGCTGTTGATGTATCTAATAGGGAACAAATGTCTATCATTCTTCGATTTGTTGATTGTGATGGGTTTATTAGAGAACGGTTTTTCAAAGTGCTTAGTGTGGCAGACACTTGTTCTCAAACTCTAAAAGATGAGATATCTAAAGTCCTTACTCAATATGATCTTCAAGTAGAAAATATGCGTGGGCAAGGCTATGATGGTGCTAGCAACATGCGGGGTGAATTTAATGGTTTGCAAGCTTTGTTTCGTCAAGAGTGTCCATATGCATATTATGTTCATTGTTTTGCTCATCGCTTACAATTGACTTTAAATGCTGCAGCTAAAGGGGTGCATGATATTTGGGAATTCTTTTCAACTCTAAGTTTGATTGTAAATTTTGTTGATTCTTCTGCAAAAAGACATTCAGCTTTGAGAGTTATTAGAGAAGAAGAAATTGCAAATTTAGTGGCTGCTGGAGCACTTGAGACTGGTAGAGGTGCTAATCAGACTTGCACTTTGCAACGAGCAGGGGCTACTCGTTGGGGTTCACATCTTCGCTCTATTTCAAGTTTGATTAAGTTATTTGGAGCTACCCAAACAACTCTTGCAAATTTGGTTGCAGATGGACCAAATAAAGTACAAGGAGAAGCAAAGAGTGTAGGTAATGCAATGAAGCGTTTTGATTTTGTGTTTTGCTTGCTTTTGATGCATGATGTCATGAAGATTACTGATTTTCTTTGTCAGTCATTGCAAAAAAAAGCCATAGACATATTGAATGCTCTCAATTTTCTTTCAATAACAAAATCAAAACTTCAAGATATGAGAGAAGATGGTTGGGATGATTTGATTATGAGGGTTGAAACATTTTGTTGTGAGCATGATATTATTATGCCAGATATGTCTGCTCCTTATAAGAAAAGTATAAGGGCTTGTGAACAAAATATTACAAATGAGCATTATTATCGGGTCAATATACTTAATGCTGTGATAGACTTTCAATTGGCAGAGTTGGATAGTAGATTTACAGATAATTCGTTGGAGCTCCTTATTCTTAGTGCTACATTTGATCCACGCGATAATTTTCGATCATTTAAATGTGAAGATGCTTGCAATCTTGCTTTGAGGTTTTATCCTCAAGATTTTACTTCATATGATATGCTTGCTCTAGATGTGGAGTGTGGGTATTTTGTAGCTGGTATTCAGAAGGATCCAAGATTTGCCAACACAACTACTGTGTCTGATTTGTGTCGGCGGTTAGTTGAATCAAGAAAGTCAGCATTCTTTCCTATGATTTATAGATTGATTTGTCTTGTGCTGACTCTGCCAGTTTCTACAGCAACAACAGAGAGAGCATTTTCATCTATGACCATCATAAAAAACAAACTTCGAAATAAGATGGAAGATGAGTTTTTTGATGATTTGATGGTTCTCTACATCGAAAAAGAATTTGCCGATAGCATTGATAATGATTCTGTGATTGCTGAGTTTGAACTCAGTGGGTCTAGGAGGGTACGATTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

829

Amino Acids

94.24

Weight (kDa)

6.7

Isoelectric Point (pI)

51.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 171 - 406 1.9e-49 Domain of unknown function (DUF4371)
Dimer_Tnp_hAT PF05699 745 - 802 1.5e-08 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1878
AccII CGCG 1 cut(s) 2040
AciI CCGC 4 cut(s) 438, 806, 1201, 2218
AclWI GGATC 4 cut(s) 248, 2027, 2168, 2181
AcoI YGGCCR 1 cut(s) 419
AcsI RAATTY 9 cut(s) 392, 586, 968, 1208, 1331, 1360, 1426, 1576, 2411
AcvI CACGTG 1 cut(s) 574
AcyI GRCGYC 1 cut(s) 268
AfaI GTAC 4 cut(s) 29, 284, 1605, 2478
AfiI CCNNNNNNNGG 1 cut(s) 945
AflII CTTAAG 1 cut(s) 349
AjnI CCWGG 2 cut(s) 256, 865
AluBI AGCT 8 cut(s) 317, 992, 1226, 1307, 1394, 1556, 2008, 2159
AluI AGCT 8 cut(s) 317, 992, 1226, 1307, 1394, 1556, 2008, 2159
Alw21I GWGCWC 3 cut(s) 64, 1447, 2010
Alw26I GTCTC 1 cut(s) 1445
AlwI GGATC 4 cut(s) 248, 2027, 2168, 2181
AoxI GGCC 2 cut(s) 419, 760
ApeKI GCWGC 3 cut(s) 1301, 1304, 1436
ApoI RAATTY 9 cut(s) 392, 586, 968, 1208, 1331, 1360, 1426, 1576, 2411
ArsI GACNNNNNNTTYG 2 cut(s) 1465, 1497
AspS9I GGNCC 2 cut(s) 332, 1592
AsuHPI GGTGA 2 cut(s) 165, 1217
AsuII TTCGAA 2 cut(s) 310, 2353
AsuNHI GCTAGC 1 cut(s) 1190
AvaII GGWCC 2 cut(s) 332, 1592
BamHI GGATCC 1 cut(s) 2173
BanII GRGCYC 1 cut(s) 2010
BbrPI CACGTG 1 cut(s) 574
Bbv12I GWGCWC 3 cut(s) 64, 1447, 2010
BbvI GCAGC 3 cut(s) 1288, 1316, 1423
BceAI ACGGC 1 cut(s) 406
BcgI CGANNNNNNTGC 2 cut(s) 1910, 1944
BciT130I CCWGG 2 cut(s) 258, 867
BciVI GTATCC 1 cut(s) 986
BcoDI GTCTC 1 cut(s) 1445
BfaI CTAG 4 cut(s) 188, 1191, 2132, 2469
BfmI CTRYAG 3 cut(s) 714, 1302, 2298
BfrI CTTAAG 1 cut(s) 349
BfuI GTATCC 1 cut(s) 986
BisI GCNGC 3 cut(s) 1302, 1305, 1437
BlsI GCNGC 3 cut(s) 1303, 1306, 1438
Bme1390I CCNGG 2 cut(s) 258, 867
Bme18I GGWCC 2 cut(s) 332, 1592
BmgT120I GGNCC 2 cut(s) 332, 1592
BmiI GGNNCC 1 cut(s) 2175
BmrFI CCNGG 2 cut(s) 258, 867
BmsI GCATC 3 cut(s) 952, 1662, 2059
BmtI GCTAGC 1 cut(s) 1194
BoxI GACNNNNGTC 1 cut(s) 378
BpmI CTGGAG 1 cut(s) 1461
Bpu14I TTCGAA 2 cut(s) 310, 2353
BpuEI CTTGAG 3 cut(s) 449, 1469, 2085
BsaAI YACGTR 1 cut(s) 574
BsaHI GRCGYC 1 cut(s) 268
BsaJI CCNNGG 2 cut(s) 422, 742
BsaWI WCCGGW 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 945
Bse1I ACTGG 2 cut(s) 1459, 2291
Bse3DI GCAATG 2 cut(s) 1641, 1712
BseBI CCWGG 2 cut(s) 258, 867
BseDI CCNNGG 2 cut(s) 422, 742
BseGI GGATG 4 cut(s) 499, 782, 844, 1810
BseLI CCNNNNNNNGG 1 cut(s) 945
BseMI GCAATG 2 cut(s) 1641, 1712
BseMII CTCAG 4 cut(s) 129, 504, 2439, 2473
BseNI ACTGG 2 cut(s) 1459, 2291
BseXI GCAGC 3 cut(s) 1288, 1316, 1423
Bsh1236I CGCG 1 cut(s) 2040
BshFI GGCC 2 cut(s) 421, 762
BsiHKAI GWGCWC 3 cut(s) 64, 1447, 2010
BsiSI CCGG 2 cut(s) 13, 700
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 945
BsmAI GTCTC 1 cut(s) 1445
BsmFI GGGAC 1 cut(s) 143
BsmI GAATGC 2 cut(s) 1747, 2243
BsnI GGCC 2 cut(s) 421, 762
Bsp119I TTCGAA 2 cut(s) 310, 2353
Bsp1286I GDGCHC 3 cut(s) 64, 1447, 2010
Bsp143I GATC 6 cut(s) 7, 253, 1147, 2032, 2051, 2173
BspACI CCGC 4 cut(s) 438, 806, 1201, 2218
BspANI GGCC 2 cut(s) 421, 762
BspCNI CTCAG 4 cut(s) 130, 505, 2440, 2472
BspFNI CGCG 1 cut(s) 2040
BspHI TCATGA 1 cut(s) 1683
BspLI GGNNCC 1 cut(s) 2175
BspMAI CTGCAG 1 cut(s) 1306
BspOI GCTAGC 1 cut(s) 1194
BspPI GGATC 4 cut(s) 248, 2027, 2168, 2181
BspQI GCTCTTC 1 cut(s) 307
BspT104I TTCGAA 2 cut(s) 310, 2353
BspTI CTTAAG 1 cut(s) 349
BsrDI GCAATG 2 cut(s) 1641, 1712
BsrI ACTGG 2 cut(s) 1459, 2291
BssECI CCNNGG 2 cut(s) 422, 742
BssMI GATC 6 cut(s) 7, 253, 1147, 2032, 2051, 2173
BssNI GRCGYC 1 cut(s) 268
BssT1I CCWWGG 1 cut(s) 742
Bst2UI CCWGG 2 cut(s) 258, 867
Bst4CI ACNGT 3 cut(s) 336, 1068, 2200
Bst6I CTCTTC 2 cut(s) 186, 307
BstACI GRCGYC 1 cut(s) 268
BstAFI CTTAAG 1 cut(s) 349
BstBAI YACGTR 1 cut(s) 574
BstBI TTCGAA 2 cut(s) 310, 2353
BstC8I GCNNGC 6 cut(s) 739, 1192, 1224, 1664, 2074, 2127
BstDSI CCRYGG 1 cut(s) 422
BstF5I GGATG 4 cut(s) 499, 782, 844, 1810
BstFNI CGCG 1 cut(s) 2040
BstKTI GATC 6 cut(s) 10, 256, 1150, 2035, 2054, 2176
BstMAI GTCTC 1 cut(s) 1445
BstMBI GATC 6 cut(s) 7, 253, 1147, 2032, 2051, 2173
BstMWI GCNNNNNNNGC 3 cut(s) 1442, 1672, 2287
BstNI CCWGG 2 cut(s) 258, 867
BstNSI RCATGY 1 cut(s) 1201
BstPAI GACNNNNGTC 1 cut(s) 378
BstSCI CCNGG 2 cut(s) 256, 865
BstSFI CTRYAG 3 cut(s) 714, 1302, 2298
BstUI CGCG 1 cut(s) 2040
BstV1I GCAGC 3 cut(s) 1288, 1316, 1423
BstX2I RGATCY 1 cut(s) 2173
BstYI RGATCY 1 cut(s) 2173
BsuI GTATCC 1 cut(s) 986
BsuRI GGCC 2 cut(s) 421, 762
BtgI CCRYGG 1 cut(s) 422
BtgZI GCGATG 1 cut(s) 1262
BtsCI GGATG 4 cut(s) 499, 782, 844, 1810
BtsIMutI CAGTG 1 cut(s) 2467
Cac8I GCNNGC 6 cut(s) 739, 1192, 1224, 1664, 2074, 2127
CciI TCATGA 1 cut(s) 1683
Cfr13I GGNCC 2 cut(s) 332, 1592
CseI GACGC 1 cut(s) 257
Csp6I GTAC 4 cut(s) 28, 283, 1604, 2477
CspCI CAANNNNNGTGG 2 cut(s) 1413, 1448
CviAII CATG 9 cut(s) 45, 518, 607, 764, 1198, 1319, 1676, 1684, 1844
CviQI GTAC 4 cut(s) 28, 283, 1604, 2477
DpnI GATC 6 cut(s) 9, 255, 1149, 2034, 2053, 2175
DpnII GATC 6 cut(s) 7, 253, 1147, 2032, 2051, 2173
DraI TTTAAA 3 cut(s) 165, 1296, 2059
EaeI YGGCCR 1 cut(s) 419
Eam1104I CTCTTC 2 cut(s) 186, 307
EarI CTCTTC 2 cut(s) 186, 307
Ecl136II GAGCTC 1 cut(s) 2008
Eco130I CCWWGG 1 cut(s) 742
Eco24I GRGCYC 1 cut(s) 2010
Eco32I GATATC 1 cut(s) 1125
Eco47I GGWCC 2 cut(s) 332, 1592
Eco53kI GAGCTC 1 cut(s) 2008
Eco72I CACGTG 1 cut(s) 574
EcoICRI GAGCTC 1 cut(s) 2008
EcoRI GAATTC 1 cut(s) 1331
EcoRII CCWGG 2 cut(s) 256, 865
EcoRV GATATC 1 cut(s) 1125
EcoT14I CCWWGG 1 cut(s) 742
EcoT22I ATGCAT 2 cut(s) 1255, 1677
EcoT38I GRGCYC 1 cut(s) 2010
ErhI CCWWGG 1 cut(s) 742
FaeI CATG 9 cut(s) 48, 521, 610, 767, 1201, 1322, 1679, 1687, 1847
FaqI GGGAC 1 cut(s) 143
FatI CATG 9 cut(s) 44, 517, 606, 763, 1197, 1318, 1675, 1683, 1843
FauI CCCGC 1 cut(s) 1194
FauNDI CATATG 2 cut(s) 1249, 2116
Fnu4HI GCNGC 3 cut(s) 1302, 1305, 1437
FokI GGATG 4 cut(s) 486, 769, 851, 1817
FriOI GRGCYC 1 cut(s) 2010
Fsp4HI GCNGC 3 cut(s) 1302, 1305, 1437
FspBI CTAG 4 cut(s) 188, 1191, 2132, 2469
GluI GCNGC 3 cut(s) 1302, 1305, 1437
GsuI CTGGAG 1 cut(s) 1461
HaeIII GGCC 2 cut(s) 421, 762
HapII CCGG 2 cut(s) 13, 700
HgaI GACGC 1 cut(s) 257
Hin1I GRCGYC 1 cut(s) 268
Hin1II CATG 9 cut(s) 48, 521, 610, 767, 1201, 1322, 1679, 1687, 1847
HindIII AAGCTT 1 cut(s) 1224
HpaII CCGG 2 cut(s) 13, 700
HphI GGTGA 2 cut(s) 165, 1217
Hpy166II GTNNAC 3 cut(s) 51, 1514, 1901
Hpy188I TCNGA 3 cut(s) 1473, 2169, 2206
Hpy188III TCNNGA 8 cut(s) 245, 947, 1238, 1684, 1781, 2102, 2132, 2232
Hpy8I GTNNAC 3 cut(s) 51, 1514, 1901
HpyAV CCTTC 2 cut(s) 180, 2164
HpyCH4III ACNGT 3 cut(s) 336, 1068, 2200
HpyCH4IV ACGT 2 cut(s) 250, 573
HpyF10VI GCNNNNNNNGC 3 cut(s) 1442, 1672, 2287
HpySE526I ACGT 2 cut(s) 250, 573
Hsp92I GRCGYC 1 cut(s) 268
Hsp92II CATG 9 cut(s) 48, 521, 610, 767, 1201, 1322, 1679, 1687, 1847
Kzo9I GATC 6 cut(s) 7, 253, 1147, 2032, 2051, 2173
LguI GCTCTTC 1 cut(s) 307
LmnI GCTCC 7 cut(s) 67, 868, 1442, 1553, 1876, 2005, 2013
Lsp1109I GCAGC 3 cut(s) 1288, 1316, 1423
LweI GCATC 3 cut(s) 952, 1662, 2059
MaeI CTAG 4 cut(s) 188, 1191, 2132, 2469
MaeII ACGT 2 cut(s) 250, 573
MaeIII GTNAC 4 cut(s) 133, 299, 621, 923
MalI GATC 6 cut(s) 9, 255, 1149, 2034, 2053, 2175
MboI GATC 6 cut(s) 7, 253, 1147, 2032, 2051, 2173
MfeI CAATTG 2 cut(s) 1286, 1964
MflI RGATCY 1 cut(s) 2173
MhlI GDGCHC 3 cut(s) 64, 1447, 2010
MlyI GAGTC 4 cut(s) 629, 690, 858, 2278
MmeI TCCRAC 4 cut(s) 426, 512, 1956, 1983
Mph1103I ATGCAT 2 cut(s) 1255, 1677
MslI CAYNNNNRTG 1 cut(s) 2059
MspCI CTTAAG 1 cut(s) 349
MspI CCGG 2 cut(s) 13, 700
MspR9I CCNGG 2 cut(s) 258, 867
MunI CAATTG 2 cut(s) 1286, 1964
Mva1269I GAATGC 2 cut(s) 1747, 2243
MvaI CCWGG 2 cut(s) 258, 867
MvnI CGCG 1 cut(s) 2040
MwoI GCNNNNNNNGC 3 cut(s) 1442, 1672, 2287
NdeI CATATG 2 cut(s) 1249, 2116
NdeII GATC 6 cut(s) 7, 253, 1147, 2032, 2051, 2173
NheI GCTAGC 1 cut(s) 1190
NlaIII CATG 9 cut(s) 48, 521, 610, 767, 1201, 1322, 1679, 1687, 1847
NlaIV GGNNCC 1 cut(s) 2175
NmuCI GTSAC 3 cut(s) 133, 299, 621
NsiI ATGCAT 2 cut(s) 1255, 1677
NspI RCATGY 1 cut(s) 1201
NspV TTCGAA 2 cut(s) 310, 2353
PagI TCATGA 1 cut(s) 1683
PciSI GCTCTTC 1 cut(s) 307
PctI GAATGC 2 cut(s) 1747, 2243
PfeI GAWTC 6 cut(s) 770, 815, 943, 1370, 2228, 2435
PfoI TCCNGGA 1 cut(s) 256
PkrI GCNGC 3 cut(s) 1303, 1306, 1438
PleI GAGTC 4 cut(s) 628, 690, 857, 2278
PmaCI CACGTG 1 cut(s) 574
PmlI CACGTG 1 cut(s) 574
PpsI GAGTC 4 cut(s) 628, 690, 857, 2278
Ppu21I YACGTR 1 cut(s) 574
PshAI GACNNNNGTC 1 cut(s) 378
PsiI TTATAA 1 cut(s) 1878
Psp124BI GAGCTC 1 cut(s) 2010
Psp6I CCWGG 2 cut(s) 256, 865
PspCI CACGTG 1 cut(s) 574
PspGI CCWGG 2 cut(s) 256, 865
PspN4I GGNNCC 1 cut(s) 2175
PspPI GGNCC 2 cut(s) 332, 1592
PstI CTGCAG 1 cut(s) 1306
PsuI RGATCY 1 cut(s) 2173
RsaI GTAC 4 cut(s) 29, 284, 1605, 2478
RsaNI GTAC 4 cut(s) 28, 283, 1604, 2477
RseI CAYNNNNRTG 1 cut(s) 2059
SacI GAGCTC 1 cut(s) 2010
SapI GCTCTTC 1 cut(s) 307
SatI GCNGC 3 cut(s) 1302, 1305, 1437
Sau3AI GATC 6 cut(s) 7, 253, 1147, 2032, 2051, 2173
Sau96I GGNCC 2 cut(s) 332, 1592
SchI GAGTC 4 cut(s) 629, 690, 858, 2278
ScrFI CCNGG 2 cut(s) 258, 867
SduI GDGCHC 3 cut(s) 64, 1447, 2010
SfaNI GCATC 3 cut(s) 952, 1662, 2059
SfcI CTRYAG 3 cut(s) 714, 1302, 2298
SfuI TTCGAA 2 cut(s) 310, 2353
SinI GGWCC 2 cut(s) 332, 1592
SmiI ATTTAAAT 1 cut(s) 2059
SmiMI CAYNNNNRTG 1 cut(s) 2059
SmlI CTYRAG 4 cut(s) 349, 428, 1448, 2100
SmoI CTYRAG 4 cut(s) 349, 428, 1448, 2100
SsiI CCGC 4 cut(s) 438, 806, 1201, 2218
SspI AATATT 3 cut(s) 307, 601, 1909
SspMI CTAG 4 cut(s) 188, 1191, 2132, 2469
SstI GAGCTC 1 cut(s) 2010
StyD4I CCNGG 2 cut(s) 256, 865
StyI CCWWGG 1 cut(s) 742
SwaI ATTTAAAT 1 cut(s) 2059
TaaI ACNGT 3 cut(s) 336, 1068, 2200
TaiI ACGT 2 cut(s) 253, 576
TaqI TCGA 7 cut(s) 81, 310, 388, 1033, 2050, 2353, 2403
TatI WGTACW 1 cut(s) 1603
TfiI GAWTC 6 cut(s) 770, 815, 943, 1370, 2228, 2435
TscAI CASTG 1 cut(s) 2467
TseFI GTSAC 3 cut(s) 133, 299, 621
TseI GCWGC 3 cut(s) 1301, 1304, 1436
Tsp45I GTSAC 3 cut(s) 133, 299, 621
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 1 cut(s) 2467
Vha464I CTTAAG 1 cut(s) 349
VpaK11BI GGWCC 2 cut(s) 332, 1592
XapI RAATTY 9 cut(s) 392, 586, 968, 1208, 1331, 1360, 1426, 1576, 2411
XbaI TCTAGA 1 cut(s) 2131
XceI RCATGY 1 cut(s) 1201
XspI CTAG 4 cut(s) 188, 1191, 2132, 2469
Zsp2I ATGCAT 2 cut(s) 1255, 1677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.