Rmu_sc0003076.1_g000005

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003076.1
OG0000122
Physical Location & Seq
Forward (+)
24216 .. 25067
852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003076.1_g000005.1.cds

Sequence Viewer

Length: 852 bp
atgttaagatactttaaaagaaaagaaaattctggtgcagaggagtcgtcgggtataaatacctcattggagccatcccctgcaaaaaaaacaaagaagaatgatagtaattcagagaagccttgtccggaatttaatgaaaaatatcctcctgatcctggaaatcgtcctccaatttcaagctatcattctaatgttcaagatgaagtacgcaaatattatctacaaaaaggtccttgtcaacctagagctcacgagtttcctatcacaaaatttgggagaaagaaaagaagatttgttaaagagtggtttgatgattttcctacttggttagagtacagcataaaaaacgatgctgcatattgtctatgttgttatctttttaaacaaggaggtggtgatgcttttgtgggtgatggatttaaaaactggaagaagaagagtatagtatatggtcatgttggagggccaaacagtacccataacgaggctcagagaaactgtgacgcattactaaatcaaaaacaacagattgaaaccatattgtcaaatcataccagccaagatcggattgactatcggattcgcttaagtgcatcaatcggtgttgttagaattcttttgaagcaaggacttccatttcatgggcatgatgaatctgaaaattcaaataatcgaggaaactttcttgaaattttggaatggttatgcggttataatgaagatataaaagctgtcacattgaaaaatgctcctgaaaatttgaagttaacatcacatgatattcagaaggacattgtaagtgctatttcagttgaaattgtcaatacaattgctaggtcaaggatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

283

Amino Acids

32.34

Weight (kDa)

8.92

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 717
AccB7I CCANNNNNTGG 1 cut(s) 644
AccIII TCCGGA 1 cut(s) 127
AciI CCGC 1 cut(s) 711
AclWI GGATC 1 cut(s) 149
AcsI RAATTY 7 cut(s) 28, 131, 272, 615, 664, 693, 760
AfaI GTAC 3 cut(s) 210, 338, 478
AfiI CCNNNNNNNGG 3 cut(s) 158, 487, 644
AflII CTTAAG 1 cut(s) 589
AgsI TTSAA 9 cut(s) 180, 200, 536, 625, 669, 692, 745, 766, 818
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 3 cut(s) 183, 251, 734
AluI AGCT 3 cut(s) 183, 251, 734
Alw21I GWGCWC 1 cut(s) 253
AlwI GGATC 1 cut(s) 149
Aor13HI TCCGGA 1 cut(s) 127
AoxI GGCC 1 cut(s) 467
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 7 cut(s) 28, 131, 272, 615, 664, 693, 760
AspS9I GGNCC 2 cut(s) 233, 467
AsuHPI GGTGA 2 cut(s) 410, 425
AvaII GGWCC 1 cut(s) 233
BanII GRGCYC 1 cut(s) 253
BauI CACGAG 1 cut(s) 254
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 1 cut(s) 343
BccI CCATC 2 cut(s) 82, 410
BcgI CGANNNNNNTGC 2 cut(s) 27, 61
BciT130I CCWGG 1 cut(s) 159
BfaI CTAG 2 cut(s) 246, 837
BfrI CTTAAG 1 cut(s) 589
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 159
Bme18I GGWCC 1 cut(s) 233
BmgT120I GGNCC 2 cut(s) 233, 467
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 3 cut(s) 343, 391, 605
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 487, 644
Bse1I ACTGG 1 cut(s) 434
BseAI TCCGGA 1 cut(s) 127
BseBI CCWGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 74
BseLI CCNNNNNNNGG 3 cut(s) 158, 487, 644
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 1 cut(s) 434
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 343
BsgI GTGCAG 1 cut(s) 57
BshFI GGCC 1 cut(s) 469
BsiHKAI GWGCWC 1 cut(s) 253
BsiSI CCGG 1 cut(s) 128
BslI CCNNNNNNNGG 3 cut(s) 158, 487, 644
BsnI GGCC 1 cut(s) 469
Bsp1286I GDGCHC 1 cut(s) 253
Bsp13I TCCGGA 1 cut(s) 127
Bsp143I GATC 2 cut(s) 154, 565
BspACI CCGC 1 cut(s) 711
BspANI GGCC 1 cut(s) 469
BspCNI CTCAG 1 cut(s) 505
BspEI TCCGGA 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 72
BspPI GGATC 1 cut(s) 149
BspTI CTTAAG 1 cut(s) 589
BsrI ACTGG 1 cut(s) 434
BssMI GATC 2 cut(s) 154, 565
BssSI CACGAG 1 cut(s) 254
Bst2BI CACGAG 1 cut(s) 254
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 476, 503
Bst6I CTCTTC 1 cut(s) 434
BstAFI CTTAAG 1 cut(s) 589
BstDEI CTNAG 1 cut(s) 492
BstF5I GGATG 1 cut(s) 74
BstKTI GATC 2 cut(s) 157, 568
BstMBI GATC 2 cut(s) 154, 565
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 343
BsuRI GGCC 1 cut(s) 469
BtsCI GGATG 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 233, 467
CseI GACGC 1 cut(s) 515
Csp6I GTAC 3 cut(s) 209, 337, 477
CviAII CATG 4 cut(s) 458, 644, 650, 779
CviJI RGCY 8 cut(s) 73, 121, 183, 251, 469, 491, 561, 734
CviKI_1 RGCY 8 cut(s) 73, 121, 183, 251, 469, 491, 561, 734
CviQI GTAC 3 cut(s) 209, 337, 477
DdeI CTNAG 1 cut(s) 492
DpnI GATC 2 cut(s) 156, 567
DpnII GATC 2 cut(s) 154, 565
DraI TTTAAA 3 cut(s) 16, 385, 424
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Ecl136II GAGCTC 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 233
Eco53kI GAGCTC 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 615
EcoRII CCWGG 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 253
FaeI CATG 4 cut(s) 461, 647, 653, 782
FatI CATG 4 cut(s) 457, 643, 649, 778
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 1 cut(s) 61
FriOI GRGCYC 1 cut(s) 253
Fsp4HI GCNGC 1 cut(s) 357
FspBI CTAG 2 cut(s) 246, 837
GluI GCNGC 1 cut(s) 357
HaeIII GGCC 1 cut(s) 469
HapII CCGG 1 cut(s) 128
HgaI GACGC 1 cut(s) 515
Hin1II CATG 4 cut(s) 461, 647, 653, 782
HincII GTYRAC 2 cut(s) 242, 771
HindII GTYRAC 2 cut(s) 242, 771
HinfI GANTC 3 cut(s) 44, 583, 656
HpaI GTTAAC 1 cut(s) 771
HpaII CCGG 1 cut(s) 128
HphI GGTGA 2 cut(s) 410, 425
Hpy166II GTNNAC 2 cut(s) 242, 771
Hpy188I TCNGA 6 cut(s) 115, 495, 570, 582, 661, 789
Hpy188III TCNNGA 6 cut(s) 128, 152, 200, 254, 689, 755
Hpy8I GTNNAC 2 cut(s) 242, 771
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 1 cut(s) 784
HpyCH4III ACNGT 2 cut(s) 476, 503
HpyCH4V TGCA 4 cut(s) 38, 83, 359, 596
HpyF3I CTNAG 1 cut(s) 492
Hsp92II CATG 4 cut(s) 461, 647, 653, 782
Kpn2I TCCGGA 1 cut(s) 127
KspAI GTTAAC 1 cut(s) 771
Kzo9I GATC 2 cut(s) 154, 565
LmnI GCTCC 2 cut(s) 70, 757
LpnPI CCDG 9 cut(s) 18, 93, 141, 144, 165, 171, 415, 571, 768
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 3 cut(s) 343, 391, 605
MaeI CTAG 2 cut(s) 246, 837
MaeIII GTNAC 2 cut(s) 503, 736
MalI GATC 2 cut(s) 156, 567
MboI GATC 2 cut(s) 154, 565
MboII GAAGA 6 cut(s) 109, 303, 445, 448, 451, 734
MfeI CAATTG 1 cut(s) 831
MhlI GDGCHC 1 cut(s) 253
MlyI GAGTC 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 442
MnlI CCTC 8 cut(s) 34, 73, 159, 180, 386, 458, 481, 671
MroI TCCGGA 1 cut(s) 127
MseI TTAA 8 cut(s) 5, 15, 135, 300, 384, 423, 590, 770
MslI CAYNNNNRTG 2 cut(s) 192, 648
MspCI CTTAAG 1 cut(s) 589
MspI CCGG 1 cut(s) 128
MspR9I CCNGG 1 cut(s) 159
MunI CAATTG 1 cut(s) 831
MvaI CCWGG 1 cut(s) 159
NdeII GATC 2 cut(s) 154, 565
NlaIII CATG 4 cut(s) 461, 647, 653, 782
NlaIV GGNNCC 1 cut(s) 72
NmuCI GTSAC 2 cut(s) 503, 736
PfeI GAWTC 2 cut(s) 583, 656
PflMI CCANNNNNTGG 1 cut(s) 644
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 1 cut(s) 358
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 233
PsiI TTATAA 1 cut(s) 717
Psp124BI GAGCTC 1 cut(s) 253
Psp5II RGGWCCY 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 2 cut(s) 233, 467
PspPPI RGGWCCY 1 cut(s) 233
RsaI GTAC 3 cut(s) 210, 338, 478
RsaNI GTAC 3 cut(s) 209, 337, 477
RseI CAYNNNNRTG 2 cut(s) 192, 648
SacI GAGCTC 1 cut(s) 253
SaqAI TTAA 8 cut(s) 5, 15, 135, 300, 384, 423, 590, 770
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 2 cut(s) 154, 565
Sau96I GGNCC 2 cut(s) 233, 467
SchI GAGTC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 1 cut(s) 253
SetI ASST 8 cut(s) 65, 185, 235, 247, 253, 397, 736, 842
SfaNI GCATC 3 cut(s) 343, 391, 605
SinI GGWCC 1 cut(s) 233
SmiMI CAYNNNNRTG 2 cut(s) 192, 648
SmlI CTYRAG 1 cut(s) 589
SmoI CTYRAG 1 cut(s) 589
SsiI CCGC 1 cut(s) 711
SspI AATATT 1 cut(s) 218
SspMI CTAG 2 cut(s) 246, 837
SstI GAGCTC 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 2 cut(s) 476, 503
TaqI TCGA 1 cut(s) 676
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 2 cut(s) 583, 656
Tru1I TTAA 8 cut(s) 5, 15, 135, 300, 384, 423, 590, 770
Tru9I TTAA 8 cut(s) 5, 15, 135, 300, 384, 423, 590, 770
TseFI GTSAC 2 cut(s) 503, 736
TseI GCWGC 1 cut(s) 356
Tsp45I GTSAC 2 cut(s) 503, 736
TspDTI ATGAA 5 cut(s) 153, 219, 632, 669, 735
Van91I CCANNNNNTGG 1 cut(s) 644
Vha464I CTTAAG 1 cut(s) 589
VpaK11BI GGWCC 1 cut(s) 233
XapI RAATTY 7 cut(s) 28, 131, 272, 615, 664, 693, 760
XspI CTAG 2 cut(s) 246, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.