Rmu_sc0007753.1_g000016

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007753.1
OG0000122
Physical Location & Seq
Forward (+)
82028 .. 82693
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007753.1_g000016.1.cds

Sequence Viewer

Length: 666 bp
atgaaaaagtcgtctacacagaagacacttgataagtggtttactaaaagaaaaacgcctgaaaactctgaatctagtgctaccttaccacaatctgatgttgagactcaagaggctgaaaatcgtgctaaatttccaagaactgaaatcaatgaaattcagattgattcactagaacgtgatccgggaaaacgtccgcaaatctgggaatatcatcctaacctgcaagatgaagtccgacgtgcttatattaaacttggtccataccagcctttactttcatcatatccaccaaaaggaaagcgcaaccgtagattccaatcttcgtggtttgcactattttcttcatggttagaatattctccgactgaaaataaagctttttgtctaccttgttttctttttaataagcccaccggccattctggccacaaagctttcactattgagggatttcaaagttggaagaaagtaagagatggaaagggttgtgcttttttgagtcatatgggtaaagattctgactcttttcataagaatgctgtaagagcctgtgacgacttgatgaagcaacctcagtatatacagaatgttgttgaaaattatacttcaaaacaaattgcagacaaccgtctacaagtcaaaacttcaattgaagcagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

221

Amino Acids

25.61

Weight (kDa)

9.34

Isoelectric Point (pI)

62.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 231
AccI GTMKAC 3 cut(s) 14, 388, 634
AciI CCGC 1 cut(s) 197
AclWI GGATC 1 cut(s) 176
AcoI YGGCCR 2 cut(s) 418, 427
AcsI RAATTY 2 cut(s) 131, 156
AfiI CCNNNNNNNGG 1 cut(s) 296
AgsI TTSAA 5 cut(s) 458, 599, 612, 651, 656
AjiI CACGTC 1 cut(s) 242
AluBI AGCT 2 cut(s) 380, 437
AluI AGCT 2 cut(s) 380, 437
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 1 cut(s) 176
AoxI GGCC 2 cut(s) 418, 427
ApoI RAATTY 2 cut(s) 131, 156
AspLEI GCGC 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 186
AvaII GGWCC 1 cut(s) 260
BalI TGGCCA 1 cut(s) 429
BbsI GAAGAC 1 cut(s) 29
BccI CCATC 1 cut(s) 473
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 2 cut(s) 75, 173
BfuAI ACCTGC 1 cut(s) 231
BglI GCCNNNNNGGC 1 cut(s) 426
Bme1390I CCNGG 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 260
BmgBI CACGTC 1 cut(s) 242
BmgT120I GGNCC 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 186
BoxI GACNNNNGTC 1 cut(s) 630
BpiI GAAGAC 1 cut(s) 29
BpuEI CTTGAG 1 cut(s) 93
BpuMI CCSGG 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse118I RCCGGY 1 cut(s) 416
Bse8I GATNNNNATC 1 cut(s) 319
BseGI GGATG 1 cut(s) 214
BseJI GATNNNNATC 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMII CTCAG 1 cut(s) 590
BshFI GGCC 2 cut(s) 420, 429
BsiSI CCGG 2 cut(s) 185, 417
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 1 cut(s) 98
BsmI GAATGC 1 cut(s) 544
BsnI GGCC 2 cut(s) 420, 429
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 1 cut(s) 197
BspANI GGCC 2 cut(s) 420, 429
BspCNI CTCAG 1 cut(s) 589
BspMI ACCTGC 1 cut(s) 231
BspPI GGATC 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 416
BssAI RCCGGY 1 cut(s) 416
BssMI GATC 1 cut(s) 181
Bst4CI ACNGT 2 cut(s) 311, 632
BstDEI CTNAG 1 cut(s) 576
BstF5I GGATG 1 cut(s) 214
BstHHI GCGC 1 cut(s) 306
BstKTI GATC 1 cut(s) 184
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 1 cut(s) 181
BstMWI GCNNNNNNNGC 2 cut(s) 426, 548
BstPAI GACNNNNGTC 1 cut(s) 630
BstSCI CCNGG 1 cut(s) 184
BstV2I GAAGAC 1 cut(s) 29
BsuRI GGCC 2 cut(s) 420, 429
BtrI CACGTC 1 cut(s) 242
BtsCI GGATG 1 cut(s) 214
BveI ACCTGC 1 cut(s) 231
CfoI GCGC 1 cut(s) 306
Cfr10I RCCGGY 1 cut(s) 416
Cfr13I GGNCC 1 cut(s) 260
CspCI CAANNNNNGTGG 2 cut(s) 308, 343
CviAII CATG 1 cut(s) 348
CviJI RGCY 8 cut(s) 116, 271, 380, 412, 420, 429, 437, 551
CviKI_1 RGCY 8 cut(s) 116, 271, 380, 412, 420, 429, 437, 551
DdeI CTNAG 1 cut(s) 576
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
EaeI YGGCCR 2 cut(s) 418, 427
Eco47I GGWCC 1 cut(s) 260
FaeI CATG 1 cut(s) 351
FatI CATG 1 cut(s) 347
FauNDI CATATG 1 cut(s) 507
FblI GTMKAC 3 cut(s) 14, 388, 634
FokI GGATG 1 cut(s) 201
FspBI CTAG 2 cut(s) 75, 173
GlaI GCGC 1 cut(s) 305
HaeIII GGCC 2 cut(s) 420, 429
HapII CCGG 2 cut(s) 185, 417
HhaI GCGC 1 cut(s) 306
Hin1II CATG 1 cut(s) 351
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HindIII AAGCTT 2 cut(s) 378, 435
HinfI GANTC 7 cut(s) 71, 106, 167, 315, 502, 518, 524
HpaII CCGG 2 cut(s) 185, 417
Hpy166II GTNNAC 4 cut(s) 15, 42, 389, 635
Hpy188I TCNGA 6 cut(s) 70, 97, 162, 239, 366, 523
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 4 cut(s) 15, 42, 389, 635
Hpy99I CGWCG 1 cut(s) 243
HpyCH4III ACNGT 2 cut(s) 311, 632
HpyCH4IV ACGT 3 cut(s) 178, 193, 241
HpyCH4V TGCA 3 cut(s) 226, 335, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 426, 548
HpyF3I CTNAG 1 cut(s) 576
HpySE526I ACGT 3 cut(s) 178, 193, 241
Hsp92II CATG 1 cut(s) 351
HspAI GCGC 1 cut(s) 304
Kzo9I GATC 1 cut(s) 181
LpnPI CCDG 8 cut(s) 72, 190, 198, 236, 281, 411, 430, 565
MaeI CTAG 2 cut(s) 75, 173
MaeII ACGT 3 cut(s) 178, 193, 241
MaeIII GTNAC 1 cut(s) 554
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 4 cut(s) 34, 315, 336, 478
MfeI CAATTG 1 cut(s) 651
MlsI TGGCCA 1 cut(s) 429
MluCI AATT 5 cut(s) 131, 156, 601, 618, 651
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 3 cut(s) 100, 511, 518
MmeI TCCRAC 3 cut(s) 262, 389, 443
MnlI CCTC 3 cut(s) 106, 442, 585
Mox20I TGGCCA 1 cut(s) 429
MscI TGGCCA 1 cut(s) 429
MseI TTAA 2 cut(s) 252, 405
MslI CAYNNNNRTG 1 cut(s) 537
Msp20I TGGCCA 1 cut(s) 429
MspI CCGG 2 cut(s) 185, 417
MspR9I CCNGG 1 cut(s) 186
MunI CAATTG 1 cut(s) 651
Mva1269I GAATGC 1 cut(s) 544
MwoI GCNNNNNNNGC 2 cut(s) 426, 548
NciI CCSGG 1 cut(s) 186
NdeI CATATG 1 cut(s) 507
NdeII GATC 1 cut(s) 181
NlaIII CATG 1 cut(s) 351
NmuCI GTSAC 1 cut(s) 554
PctI GAATGC 1 cut(s) 544
PfeI GAWTC 4 cut(s) 71, 167, 315, 518
PfoI TCCNGGA 1 cut(s) 184
PleI GAGTC 3 cut(s) 100, 510, 518
PpsI GAGTC 3 cut(s) 100, 510, 518
PshAI GACNNNNGTC 1 cut(s) 630
PspPI GGNCC 1 cut(s) 260
RseI CAYNNNNRTG 1 cut(s) 537
SaqAI TTAA 2 cut(s) 252, 405
Sau3AI GATC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 260
SchI GAGTC 3 cut(s) 100, 511, 518
ScrFI CCNGG 1 cut(s) 186
SetI ASST 9 cut(s) 86, 181, 196, 225, 244, 382, 394, 439, 577
SfiI GGCCNNNNNGGCC 1 cut(s) 426
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 537
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 5 cut(s) 131, 156, 601, 618, 651
SsiI CCGC 1 cut(s) 197
SspI AATATT 1 cut(s) 359
SspMI CTAG 2 cut(s) 75, 173
StyD4I CCNGG 1 cut(s) 184
TaaI ACNGT 2 cut(s) 311, 632
TaiI ACGT 3 cut(s) 181, 196, 244
TasI AATT 5 cut(s) 131, 156, 601, 618, 651
TfiI GAWTC 4 cut(s) 71, 167, 315, 518
Tru1I TTAA 2 cut(s) 252, 405
Tru9I TTAA 2 cut(s) 252, 405
TseFI GTSAC 1 cut(s) 554
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 7 cut(s) 17, 168, 246, 270, 336, 521, 581
VpaK11BI GGWCC 1 cut(s) 260
XapI RAATTY 2 cut(s) 131, 156
XmiI GTMKAC 3 cut(s) 14, 388, 634
XspI CTAG 2 cut(s) 75, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.