Rmu_sc0001353.1_g000064

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001353.1
OG0000122
Physical Location & Seq
Forward (+)
280865 .. 281887
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001353.1_g000064.1.cds

Sequence Viewer

Length: 915 bp
atgaaagcatttttagagaggtatcataagagaaaagcaacagaacagttgacaccacctgaagctcctcaaataagaaatacatccaatgatggtacttcagaacatcattccaaagaattgaacttgacaaatcagttggcaccccctcaatcccatccgacaaataatgcatctgaagatattggtacgtcaaaatattctatcaatgaaattaatatagaagatcttcctggagatcctgggcttcgaactccgattttagagtaccatcataatgttcgagatcgagatcatcctagttggttggagtatagtatagaaaaggatgctgcatattgtttgcattgttatacttttaaaccaaatattggagaccaagcaggtggtgatgtatttattggtacggggtttaataattggaagaaaaaagacaagcttaaagatcatgttggagggattaatagcgctcacaacaatgctagaagaatgtgtgaagttttattaaatcaaaggcagcatgttgatacagttttggtgaaccaaacacaacaagatcggattaactatcacactcgtttgaatgcatcagttgattgtgctcgttttctactacgacaaggattgccatttcgtggtcatgatgaatctgattattcaaataaccaaggaaattttagagtgcttttgaagtggcattctgataaagttgatgatataaaaaaggttgtcttgaaaaatgttccaagaaattatcaattaacatcacctgatattcaacatgatattgtcaaggctgctgcaactgaaactctcaatgtcataattagtgacattggtgatgcattattctctattcttgttgacgagtctcgtgatgtatcaggaaaagagcaaatggcaattgtattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

304

Amino Acids

34.52

Weight (kDa)

6.3

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 374
Acc36I ACCTGC 1 cut(s) 374
AccB1I GGYRCC 1 cut(s) 142
AccB7I CCANNNNNTGG 2 cut(s) 371, 635
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 673
AcuI CTGAAG 3 cut(s) 81, 84, 198
AfaI GTAC 4 cut(s) 97, 190, 269, 406
AfeI AGCGCT 1 cut(s) 469
AfiI CCNNNNNNNGG 2 cut(s) 371, 635
AgsI TTSAA 6 cut(s) 124, 583, 660, 691, 736, 779
AjnI CCWGG 2 cut(s) 232, 241
AluBI AGCT 2 cut(s) 65, 439
AluI AGCT 2 cut(s) 65, 439
Alw21I GWGCWC 1 cut(s) 604
Alw26I GTCTC 2 cut(s) 369, 876
AlwI GGATC 1 cut(s) 233
Aor51HI AGCGCT 1 cut(s) 469
ApeKI GCWGC 4 cut(s) 332, 517, 797, 800
ApoI RAATTY 1 cut(s) 673
AseI ATTAAT 2 cut(s) 216, 462
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 1 cut(s) 470
AsuHPI GGTGA 4 cut(s) 401, 550, 759, 851
AsuII TTCGAA 1 cut(s) 250
BanI GGYRCC 1 cut(s) 142
BauI CACGAG 1 cut(s) 873
Bbv12I GWGCWC 1 cut(s) 604
BbvI GCAGC 4 cut(s) 319, 529, 784, 787
BccI CCATC 3 cut(s) 86, 165, 279
BciT130I CCWGG 2 cut(s) 234, 243
BcoDI GTCTC 2 cut(s) 369, 876
BfaI CTAG 2 cut(s) 300, 483
BfoI RGCGCY 1 cut(s) 471
BfuAI ACCTGC 1 cut(s) 374
BglII AGATCT 1 cut(s) 226
BisI GCNGC 4 cut(s) 333, 518, 798, 801
BlsI GCNGC 4 cut(s) 334, 519, 799, 802
Bme1390I CCNGG 2 cut(s) 234, 243
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 234, 243
BmsI GCATC 4 cut(s) 182, 319, 596, 832
BpmI CTGGAG 1 cut(s) 255
Bpu14I TTCGAA 1 cut(s) 250
BsaBI GATNNNNATC 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 242, 667
Bsc4I CCNNNNNNNGG 2 cut(s) 371, 635
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 2 cut(s) 234, 243
BseDI CCNNGG 2 cut(s) 242, 667
BseGI GGATG 4 cut(s) 83, 157, 295, 334
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 2 cut(s) 371, 635
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 4 cut(s) 319, 529, 784, 787
BshNI GGYRCC 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 604
BslI CCNNNNNNNGG 2 cut(s) 371, 635
BsmAI GTCTC 2 cut(s) 369, 876
BsmI GAATGC 2 cut(s) 589, 697
Bso31I GGTCTC 1 cut(s) 369
Bsp119I TTCGAA 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 604
Bsp143I GATC 6 cut(s) 226, 238, 286, 292, 445, 556
BspHI TCATGA 1 cut(s) 640
BspLI GGNNCC 1 cut(s) 144
BspMI ACCTGC 1 cut(s) 374
BspPI GGATC 1 cut(s) 233
BspT104I TTCGAA 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 142
BspTNI GGTCTC 1 cut(s) 369
BssECI CCNNGG 2 cut(s) 242, 667
BssMI GATC 6 cut(s) 226, 238, 286, 292, 445, 556
BssSI CACGAG 1 cut(s) 873
BssT1I CCWWGG 1 cut(s) 667
Bst2BI CACGAG 1 cut(s) 873
Bst2UI CCWGG 2 cut(s) 234, 243
Bst4CI ACNGT 2 cut(s) 48, 532
BstBI TTCGAA 1 cut(s) 250
BstF5I GGATG 4 cut(s) 83, 157, 295, 334
BstH2I RGCGCY 1 cut(s) 471
BstHHI GCGC 1 cut(s) 470
BstKTI GATC 6 cut(s) 229, 241, 289, 295, 448, 559
BstMAI GTCTC 2 cut(s) 369, 876
BstMBI GATC 6 cut(s) 226, 238, 286, 292, 445, 556
BstNI CCWGG 2 cut(s) 234, 243
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 2 cut(s) 232, 241
BstV1I GCAGC 4 cut(s) 319, 529, 784, 787
BstX2I RGATCY 2 cut(s) 226, 238
BstXI CCANNNNNNTGG 1 cut(s) 386
BstYI RGATCY 2 cut(s) 226, 238
BtsCI GGATG 4 cut(s) 83, 157, 295, 334
BveI ACCTGC 1 cut(s) 374
CciI TCATGA 1 cut(s) 640
CfoI GCGC 1 cut(s) 470
Csp6I GTAC 4 cut(s) 96, 189, 268, 405
CviAII CATG 4 cut(s) 449, 521, 641, 782
CviJI RGCY 4 cut(s) 65, 247, 439, 797
CviKI_1 RGCY 4 cut(s) 65, 247, 439, 797
CviQI GTAC 4 cut(s) 96, 189, 268, 405
DpnI GATC 6 cut(s) 228, 240, 288, 294, 447, 558
DpnII GATC 6 cut(s) 226, 238, 286, 292, 445, 556
DraI TTTAAA 1 cut(s) 361
Eco130I CCWWGG 1 cut(s) 667
Eco31I GGTCTC 1 cut(s) 369
Eco47III AGCGCT 1 cut(s) 469
Eco57I CTGAAG 3 cut(s) 81, 84, 198
EcoRII CCWGG 2 cut(s) 232, 241
EcoT14I CCWWGG 1 cut(s) 667
EcoT22I ATGCAT 3 cut(s) 175, 589, 847
ErhI CCWWGG 1 cut(s) 667
FaeI CATG 4 cut(s) 452, 524, 644, 785
FalI AAGNNNNNCTT 4 cut(s) 423, 455, 716, 748
FatI CATG 4 cut(s) 448, 520, 640, 781
Fnu4HI GCNGC 4 cut(s) 333, 518, 798, 801
FokI GGATG 4 cut(s) 70, 144, 282, 341
Fsp4HI GCNGC 4 cut(s) 333, 518, 798, 801
FspBI CTAG 2 cut(s) 300, 483
GlaI GCGC 1 cut(s) 469
GluI GCNGC 4 cut(s) 333, 518, 798, 801
GsuI CTGGAG 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 471
HhaI GCGC 1 cut(s) 470
Hin1II CATG 4 cut(s) 452, 524, 644, 785
Hin6I GCGC 1 cut(s) 468
HinP1I GCGC 1 cut(s) 468
HincII GTYRAC 2 cut(s) 51, 865
HindII GTYRAC 2 cut(s) 51, 865
HindIII AAGCTT 1 cut(s) 437
HinfI GANTC 2 cut(s) 647, 869
HphI GGTGA 4 cut(s) 401, 550, 759, 851
Hpy166II GTNNAC 3 cut(s) 51, 541, 865
Hpy188I TCNGA 7 cut(s) 103, 162, 178, 258, 561, 652, 703
Hpy188III TCNNGA 6 cut(s) 284, 290, 641, 733, 875, 885
Hpy8I GTNNAC 3 cut(s) 51, 541, 865
HpyCH4III ACNGT 2 cut(s) 48, 532
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 6 cut(s) 173, 335, 346, 587, 803, 845
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 4 cut(s) 452, 524, 644, 785
HspAI GCGC 1 cut(s) 468
Kzo9I GATC 6 cut(s) 226, 238, 286, 292, 445, 556
LmnI GCTCC 1 cut(s) 70
LpnPI CCDG 8 cut(s) 72, 219, 228, 246, 255, 369, 783, 870
Lsp1109I GCAGC 4 cut(s) 319, 529, 784, 787
LweI GCATC 4 cut(s) 182, 319, 596, 832
MaeI CTAG 2 cut(s) 300, 483
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 830
MalI GATC 6 cut(s) 228, 240, 288, 294, 447, 558
MboI GATC 6 cut(s) 226, 238, 286, 292, 445, 556
MboII GAAGA 5 cut(s) 191, 221, 236, 436, 498
MfeI CAATTG 1 cut(s) 903
MflI RGATCY 2 cut(s) 226, 238
MhlI GDGCHC 1 cut(s) 604
MluCI AATT 8 cut(s) 119, 213, 418, 673, 751, 758, 825, 903
MlyI GAGTC 1 cut(s) 878
MmeI TCCRAC 3 cut(s) 185, 288, 433
MnlI CCTC 4 cut(s) 12, 78, 159, 449
Mph1103I ATGCAT 3 cut(s) 175, 589, 847
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 8 cut(s) 216, 360, 414, 441, 462, 506, 564, 761
MslI CAYNNNNRTG 2 cut(s) 276, 477
MspR9I CCNGG 2 cut(s) 234, 243
MunI CAATTG 1 cut(s) 903
Mva1269I GAATGC 2 cut(s) 589, 697
MvaI CCWGG 2 cut(s) 234, 243
NdeII GATC 6 cut(s) 226, 238, 286, 292, 445, 556
NlaIII CATG 4 cut(s) 452, 524, 644, 785
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 830
NsiI ATGCAT 3 cut(s) 175, 589, 847
NspI RCATGY 1 cut(s) 524
NspV TTCGAA 1 cut(s) 250
PagI TCATGA 1 cut(s) 640
PaqCI CACCTGC 1 cut(s) 374
PctI GAATGC 2 cut(s) 589, 697
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 647
PflMI CCANNNNNTGG 2 cut(s) 371, 635
PfoI TCCNGGA 1 cut(s) 232
PkrI GCNGC 4 cut(s) 334, 519, 799, 802
PleI GAGTC 1 cut(s) 877
PpsI GAGTC 1 cut(s) 877
PshBI ATTAAT 2 cut(s) 216, 462
Psp6I CCWGG 2 cut(s) 232, 241
PspGI CCWGG 2 cut(s) 232, 241
PspN4I GGNNCC 1 cut(s) 144
PsuI RGATCY 2 cut(s) 226, 238
RsaI GTAC 4 cut(s) 97, 190, 269, 406
RsaNI GTAC 4 cut(s) 96, 189, 268, 405
RseI CAYNNNNRTG 2 cut(s) 276, 477
SaqAI TTAA 8 cut(s) 216, 360, 414, 441, 462, 506, 564, 761
SatI GCNGC 4 cut(s) 333, 518, 798, 801
Sau3AI GATC 6 cut(s) 226, 238, 286, 292, 445, 556
SchI GAGTC 1 cut(s) 878
ScrFI CCNGG 2 cut(s) 234, 243
SduI GDGCHC 1 cut(s) 604
SetI ASST 8 cut(s) 23, 61, 67, 194, 388, 441, 729, 772
SfaNI GCATC 4 cut(s) 182, 319, 596, 832
SfuI TTCGAA 1 cut(s) 250
SmiMI CAYNNNNRTG 2 cut(s) 276, 477
Sse9I AATT 8 cut(s) 119, 213, 418, 673, 751, 758, 825, 903
SspI AATATT 2 cut(s) 200, 370
SspMI CTAG 2 cut(s) 300, 483
StyD4I CCNGG 2 cut(s) 232, 241
StyI CCWWGG 1 cut(s) 667
TaaI ACNGT 2 cut(s) 48, 532
TaiI ACGT 1 cut(s) 194
TaqI TCGA 3 cut(s) 250, 283, 289
TasI AATT 8 cut(s) 119, 213, 418, 673, 751, 758, 825, 903
TfiI GAWTC 1 cut(s) 647
Tru1I TTAA 8 cut(s) 216, 360, 414, 441, 462, 506, 564, 761
Tru9I TTAA 8 cut(s) 216, 360, 414, 441, 462, 506, 564, 761
TseFI GTSAC 1 cut(s) 830
TseI GCWGC 4 cut(s) 332, 517, 797, 800
Tsp45I GTSAC 1 cut(s) 830
TspDTI ATGAA 3 cut(s) 17, 225, 660
Van91I CCANNNNNTGG 2 cut(s) 371, 635
VspI ATTAAT 2 cut(s) 216, 462
XapI RAATTY 1 cut(s) 673
XceI RCATGY 1 cut(s) 524
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 2 cut(s) 300, 483
Zsp2I ATGCAT 3 cut(s) 175, 589, 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.