RchiOBHm_Chr3g0453661

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000122
Physical Location & Seq
Reverse (-)
4030795 .. 4031780
986 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42074

Sequence Viewer

Length: 612 bp
ATGGAGAGATTCTTTAAACGAACATCAAATGAGTTATCAGGGGCCCTCACAGAGAGTGAAAGATCAAAACAGAGTCGGGTAGAAATTGATTTGGCTAATCTTCCTTCTGATCCTGGAGAAAGAACTAAAATTTCAGATTATCATCCCGATATTAGGGATCAAATTAGAAGAGAGTATCTGCTAAGAGGTCCTTGTCGGCCTAGAAATCATCAGTTTGTCCAAACACAGTGCGGAGAAGGGAAACGAAGGTTTGTCTCTGATTGGTTTAATGACTTCCCTGATTGGTTAGAATATAGCGTAGCCAAAAATGCTGCATTTTGTTTGTGCTGCTATCTCTTCAAATCAAATGTTGGTGAGCAAGGAGGAGGTGATTGTTTTACTGGTATTGGTTTTCAAAATTGGAAGAAAAAAGAAAGATTGCATGATCATGTAGGGAAGCAGAATAGTGTCCATAATCAAGCACTGCAAAAATGTGAAGCTTTGATGAATGAAAAGCAGCATATTCGAAACATTATTGATCAGAATGTGCATCAATCCCGAATAGATTATCGAGTTCGACTAGAAGCTTCAGTTGAACCTTTTCTGCTATTGGACATTGTTTTTCCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

203

Amino Acids

23.71

Weight (kDa)

8.15

Isoelectric Point (pI)

44.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 124 - 192 1.2e-11 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 231
AclWI GGATC 2 cut(s) 104, 165
AcsI RAATTY 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 552
AfiI CCNNNNNNNGG 1 cut(s) 153
AgsI TTSAA 3 cut(s) 340, 395, 575
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 2 cut(s) 479, 566
AluI AGCT 2 cut(s) 479, 566
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 2 cut(s) 104, 165
AoxI GGCC 2 cut(s) 42, 197
ApaI GGGCCC 1 cut(s) 46
ApeKI GCWGC 3 cut(s) 311, 327, 496
ApoI RAATTY 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 579
AspS9I GGNCC 3 cut(s) 42, 43, 188
AsuHPI GGTGA 2 cut(s) 365, 380
AsuII TTCGAA 1 cut(s) 505
AvaII GGWCC 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 46
BanII GRGCYC 1 cut(s) 46
BbvI GCAGC 3 cut(s) 298, 314, 508
BcgI CGANNNNNNTGC 2 cut(s) 485, 519
BciT130I CCWGG 1 cut(s) 114
BclI TGATCA 2 cut(s) 424, 517
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 2 cut(s) 201, 560
BisI GCNGC 3 cut(s) 312, 328, 497
BlsI GCNGC 3 cut(s) 313, 329, 498
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 3 cut(s) 42, 43, 188
BmiI GGNNCC 2 cut(s) 43, 44
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 538
BpmI CTGGAG 1 cut(s) 135
Bpu14I TTCGAA 1 cut(s) 505
BsaBI GATNNNNATC 1 cut(s) 141
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 385
Bse8I GATNNNNATC 1 cut(s) 141
BseBI CCWGG 1 cut(s) 114
BseGI GGATG 1 cut(s) 142
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 1 cut(s) 378
BseSI GKGCMC 1 cut(s) 46
BseXI GCAGC 3 cut(s) 298, 314, 508
BshFI GGCC 2 cut(s) 44, 199
BslI CCNNNNNNNGG 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 259
BsnI GGCC 2 cut(s) 44, 199
Bsp119I TTCGAA 1 cut(s) 505
Bsp120I GGGCCC 1 cut(s) 42
Bsp1286I GDGCHC 1 cut(s) 46
Bsp143I GATC 5 cut(s) 62, 109, 157, 424, 517
BspACI CCGC 1 cut(s) 231
BspANI GGCC 2 cut(s) 44, 199
BspLI GGNNCC 2 cut(s) 43, 44
BspPI GGATC 2 cut(s) 104, 165
BspT104I TTCGAA 1 cut(s) 505
BsrI ACTGG 1 cut(s) 385
BssMI GATC 5 cut(s) 62, 109, 157, 424, 517
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 228
Bst6I CTCTTC 2 cut(s) 163, 341
BstBI TTCGAA 1 cut(s) 505
BstDEI CTNAG 1 cut(s) 182
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 5 cut(s) 65, 112, 160, 427, 520
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 5 cut(s) 62, 109, 157, 424, 517
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 1 cut(s) 114
BstSCI CCNGG 1 cut(s) 112
BstSLI GKGCMC 1 cut(s) 46
BstV1I GCAGC 3 cut(s) 298, 314, 508
BsuRI GGCC 2 cut(s) 44, 199
BtsCI GGATG 1 cut(s) 142
BtsI GCAGTG 1 cut(s) 461
BtsIMutI CAGTG 2 cut(s) 233, 461
Cfr13I GGNCC 3 cut(s) 42, 43, 188
CviAII CATG 2 cut(s) 422, 428
CviJI RGCY 6 cut(s) 44, 95, 199, 302, 479, 566
CviKI_1 RGCY 6 cut(s) 44, 95, 199, 302, 479, 566
DdeI CTNAG 1 cut(s) 182
DpnI GATC 5 cut(s) 64, 111, 159, 426, 519
DpnII GATC 5 cut(s) 62, 109, 157, 424, 517
DraI TTTAAA 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 163, 341
EarI CTCTTC 2 cut(s) 163, 341
Eco24I GRGCYC 1 cut(s) 46
Eco47I GGWCC 1 cut(s) 188
Eco57I CTGAAG 1 cut(s) 552
EcoO109I RGGNCCY 3 cut(s) 42, 43, 188
EcoRII CCWGG 1 cut(s) 112
EcoT38I GRGCYC 1 cut(s) 46
FaeI CATG 2 cut(s) 425, 431
FaiI YATR 5 cut(s) 294, 423, 429, 453, 501
FalI AAGNNNNNCTT 2 cut(s) 175, 207
FatI CATG 2 cut(s) 421, 427
FbaI TGATCA 2 cut(s) 424, 517
Fnu4HI GCNGC 3 cut(s) 312, 328, 497
FokI GGATG 1 cut(s) 129
FriOI GRGCYC 1 cut(s) 46
Fsp4HI GCNGC 3 cut(s) 312, 328, 497
FspBI CTAG 2 cut(s) 201, 560
GluI GCNGC 3 cut(s) 312, 328, 497
GsuI CTGGAG 1 cut(s) 135
HaeIII GGCC 2 cut(s) 44, 199
Hin1II CATG 2 cut(s) 425, 431
HindIII AAGCTT 2 cut(s) 477, 564
HinfI GANTC 2 cut(s) 9, 73
HphI GGTGA 2 cut(s) 365, 380
Hpy188I TCNGA 4 cut(s) 109, 136, 259, 522
Hpy188III TCNNGA 2 cut(s) 146, 537
HpyAV CCTTC 3 cut(s) 114, 230, 240
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4V TGCA 4 cut(s) 314, 421, 466, 529
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 1 cut(s) 182
Hsp92II CATG 2 cut(s) 425, 431
Ksp22I TGATCA 2 cut(s) 424, 517
Kzo9I GATC 5 cut(s) 62, 109, 157, 424, 517
LpnPI CCDG 5 cut(s) 24, 99, 126, 291, 366
Lsp1109I GCAGC 3 cut(s) 298, 314, 508
LweI GCATC 1 cut(s) 538
MaeI CTAG 2 cut(s) 201, 560
MalI GATC 5 cut(s) 64, 111, 159, 426, 519
MboI GATC 5 cut(s) 62, 109, 157, 424, 517
MboII GAAGA 4 cut(s) 92, 180, 328, 415
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 4 cut(s) 84, 129, 162, 397
MlyI GAGTC 1 cut(s) 82
MnlI CCTC 4 cut(s) 56, 179, 356, 359
MroXI GAANNNNTTC 1 cut(s) 579
MseI TTAA 2 cut(s) 15, 267
MslI CAYNNNNRTG 1 cut(s) 426
MspR9I CCNGG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeII GATC 5 cut(s) 62, 109, 157, 424, 517
NlaIII CATG 2 cut(s) 425, 431
NlaIV GGNNCC 2 cut(s) 43, 44
NspV TTCGAA 1 cut(s) 505
PdmI GAANNNNTTC 1 cut(s) 579
PfeI GAWTC 1 cut(s) 9
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 3 cut(s) 313, 329, 498
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
PpuMI RGGWCCY 1 cut(s) 188
Psp5II RGGWCCY 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 2 cut(s) 43, 44
PspOMI GGGCCC 1 cut(s) 42
PspPI GGNCC 3 cut(s) 42, 43, 188
PspPPI RGGWCCY 1 cut(s) 188
RseI CAYNNNNRTG 1 cut(s) 426
SaqAI TTAA 2 cut(s) 15, 267
SatI GCNGC 3 cut(s) 312, 328, 497
Sau3AI GATC 5 cut(s) 62, 109, 157, 424, 517
Sau96I GGNCC 3 cut(s) 42, 43, 188
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 114
SduI GDGCHC 1 cut(s) 46
SetI ASST 6 cut(s) 190, 251, 370, 481, 568, 580
SfaNI GCATC 1 cut(s) 538
SfuI TTCGAA 1 cut(s) 505
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 426
Sse9I AATT 4 cut(s) 84, 129, 162, 397
SsiI CCGC 1 cut(s) 231
SspMI CTAG 2 cut(s) 201, 560
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 228
TaqI TCGA 3 cut(s) 505, 550, 556
TasI AATT 4 cut(s) 84, 129, 162, 397
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 2 cut(s) 15, 267
Tru9I TTAA 2 cut(s) 15, 267
TscAI CASTG 2 cut(s) 233, 468
TseI GCWGC 3 cut(s) 311, 327, 496
TspDTI ATGAA 2 cut(s) 500, 504
TspRI CASTG 2 cut(s) 233, 468
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 579
XspI CTAG 2 cut(s) 201, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.