Rmu_sc0000087.1_g000015

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000087.1
OG0000122
Physical Location & Seq
Forward (+)
98908 .. 100209
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000087.1_g000015.1.cds

Sequence Viewer

Length: 945 bp
atggagagattctttaaacgaacatcaaatgagttatcatcacccctcatagagagtgaaagatcaaaacagagtcgggtagaaattgatttggctaatcttccttctgatcctggagaaagaactaaaattttagattatcatcccgatattagggatcaaattagaagagagtatctgctaagagattatcgagttcgactagaagcttcagttgattgcattcggtttcttctaagacaaggccttgcctttcgtggtcatgacgagttagagaactcaagcaatcaaggtaactttcttcagcttttgcaatttcctattgatcacaatgaagaagtgagagctgttgcattgaagaatgctcctgaaaatcttagattgacatcacctaggattaaaaaggacattgttaatgctgctgttgttgaaactacaaatgttattatgagaaacatgagtgatgtctttttttctatcctagttgatgaatctagggatgtatctgtgaaggagcaaatggttgttacctttcgttatgtggataaaaatgggtgtgtgattgaatccttcatagtcattgaacatgtagcgagtactactgcaatctcacttaagaaagctatacatgcactattctctaaacatggattaagcttctctaggctatatggtcaaggttacgatggcgccaataatatgagtggagaacttaatggtctgaagacccttgttttgaaggataactcgagtgctttttatgttcattgtttcgcacatcagcttcaattagctttggttggtgtagccaagaaacatgaaattgtaggtgctttctttgcatcaattggtagtgttgtaaacattgttggggcattttctaaactccgagacattcttcgcgaaaaggaagctcttaaagtcattgaggcacataaagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

314

Amino Acids

35.52

Weight (kDa)

8.34

Isoelectric Point (pI)

39.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 689
AccII CGCG 1 cut(s) 903
AclWI GGATC 2 cut(s) 104, 165
AcsI RAATTY 1 cut(s) 129
AcuI CTGAAG 3 cut(s) 195, 287, 743
AcyI GRCGYC 1 cut(s) 690
AfaI GTAC 1 cut(s) 598
AfiI CCNNNNNNNGG 1 cut(s) 153
AflII CTTAAG 1 cut(s) 614
AflIII ACRYGT 1 cut(s) 586
AgsI TTSAA 6 cut(s) 358, 431, 566, 584, 739, 788
AjnI CCWGG 1 cut(s) 112
AluBI AGCT 8 cut(s) 209, 307, 347, 623, 657, 784, 794, 914
AluI AGCT 8 cut(s) 209, 307, 347, 623, 657, 784, 794, 914
Alw26I GTCTC 1 cut(s) 885
AlwI GGATC 2 cut(s) 104, 165
Ama87I CYCGRG 1 cut(s) 748
AoxI GGCC 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 419
ApoI RAATTY 1 cut(s) 129
ArsI GACNNNNNNTTYG 2 cut(s) 718, 750
AspA2I CCTAGG 1 cut(s) 392
AspLEI GCGC 1 cut(s) 692
AsuHPI GGTGA 2 cut(s) 33, 381
AvaI CYCGRG 1 cut(s) 748
AvrII CCTAGG 1 cut(s) 392
BanI GGYRCC 1 cut(s) 689
BbsI GAAGAC 1 cut(s) 731
BbvI GCAGC 1 cut(s) 406
BccI CCATC 1 cut(s) 680
BciT130I CCWGG 1 cut(s) 114
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 885
BfaI CTAG 5 cut(s) 203, 393, 482, 495, 663
BfoI RGCGCY 1 cut(s) 693
BfrI CTTAAG 1 cut(s) 614
BisI GCNGC 1 cut(s) 420
BlnI CCTAGG 1 cut(s) 392
BlsI GCNGC 1 cut(s) 421
BmcAI AGTACT 1 cut(s) 598
Bme1390I CCNGG 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 748
BmiI GGNNCC 1 cut(s) 691
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 851
BpiI GAAGAC 1 cut(s) 731
BpmI CTGGAG 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 265
BsaBI GATNNNNATC 2 cut(s) 141, 385
BsaHI GRCGYC 1 cut(s) 690
BsaJI CCNNGG 1 cut(s) 392
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse8I GATNNNNATC 2 cut(s) 141, 385
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 392
BseGI GGATG 2 cut(s) 142, 505
BseJI GATNNNNATC 2 cut(s) 141, 385
BseLI CCNNNNNNNGG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 406
Bsh1236I CGCG 1 cut(s) 903
BshFI GGCC 1 cut(s) 246
BshNI GGYRCC 1 cut(s) 689
BsiHKCI CYCGRG 1 cut(s) 748
BslI CCNNNNNNNGG 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 885
BsmI GAATGC 2 cut(s) 222, 367
BsnI GGCC 1 cut(s) 246
BsoBI CYCGRG 1 cut(s) 748
Bsp143I GATC 4 cut(s) 62, 109, 157, 325
Bsp68I TCGCGA 1 cut(s) 903
BspANI GGCC 1 cut(s) 246
BspFNI CGCG 1 cut(s) 903
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 691
BspPI GGATC 2 cut(s) 104, 165
BspT107I GGYRCC 1 cut(s) 689
BspTI CTTAAG 1 cut(s) 614
BssECI CCNNGG 1 cut(s) 392
BssMI GATC 4 cut(s) 62, 109, 157, 325
BssNI GRCGYC 1 cut(s) 690
BssT1I CCWWGG 1 cut(s) 392
Bst2UI CCWGG 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 163
BstACI GRCGYC 1 cut(s) 690
BstAFI CTTAAG 1 cut(s) 614
BstDEI CTNAG 3 cut(s) 182, 236, 377
BstF5I GGATG 2 cut(s) 142, 505
BstFNI CGCG 1 cut(s) 903
BstH2I RGCGCY 1 cut(s) 693
BstHHI GCGC 1 cut(s) 692
BstKTI GATC 4 cut(s) 65, 112, 160, 328
BstMAI GTCTC 1 cut(s) 885
BstMBI GATC 4 cut(s) 62, 109, 157, 325
BstMWI GCNNNNNNNGC 2 cut(s) 629, 839
BstNI CCWGG 1 cut(s) 114
BstNSI RCATGY 2 cut(s) 590, 632
BstSCI CCNGG 1 cut(s) 112
BstUI CGCG 1 cut(s) 903
BstV1I GCAGC 1 cut(s) 406
BstV2I GAAGAC 1 cut(s) 731
BsuRI GGCC 1 cut(s) 246
BtsCI GGATG 2 cut(s) 142, 505
BtuMI TCGCGA 1 cut(s) 903
CciI TCATGA 1 cut(s) 262
CfoI GCGC 1 cut(s) 692
Csp6I GTAC 1 cut(s) 597
CviAII CATG 6 cut(s) 263, 457, 587, 629, 647, 818
CviQI GTAC 1 cut(s) 597
DdeI CTNAG 3 cut(s) 182, 236, 377
DinI GGCGCC 1 cut(s) 691
DpnI GATC 4 cut(s) 64, 111, 159, 327
DpnII GATC 4 cut(s) 62, 109, 157, 325
DraI TTTAAA 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 392
Eco147I AGGCCT 1 cut(s) 246
Eco57I CTGAAG 3 cut(s) 195, 287, 743
Eco88I CYCGRG 1 cut(s) 748
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 392
EgeI GGCGCC 1 cut(s) 691
EheI GGCGCC 1 cut(s) 691
ErhI CCWWGG 1 cut(s) 392
FaeI CATG 6 cut(s) 266, 460, 590, 632, 650, 821
FatI CATG 6 cut(s) 262, 456, 586, 628, 646, 817
FbaI TGATCA 1 cut(s) 325
Fnu4HI GCNGC 1 cut(s) 420
FokI GGATG 2 cut(s) 129, 512
Fsp4HI GCNGC 1 cut(s) 420
FspBI CTAG 5 cut(s) 203, 393, 482, 495, 663
GlaI GCGC 1 cut(s) 691
GluI GCNGC 1 cut(s) 420
GsuI CTGGAG 1 cut(s) 135
HaeII RGCGCY 1 cut(s) 693
HaeIII GGCC 1 cut(s) 246
HhaI GCGC 1 cut(s) 692
Hin1I GRCGYC 1 cut(s) 690
Hin1II CATG 6 cut(s) 266, 460, 590, 632, 650, 821
Hin6I GCGC 1 cut(s) 690
HinP1I GCGC 1 cut(s) 690
HindIII AAGCTT 2 cut(s) 207, 655
HinfI GANTC 4 cut(s) 9, 73, 491, 566
HphI GGTGA 2 cut(s) 33, 381
Hpy166II GTNNAC 1 cut(s) 862
Hpy188I TCNGA 3 cut(s) 109, 723, 890
Hpy188III TCNNGA 4 cut(s) 146, 263, 368, 902
Hpy8I GTNNAC 1 cut(s) 862
HpyAV CCTTC 4 cut(s) 114, 505, 580, 733
HpyCH4V TGCA 6 cut(s) 222, 313, 353, 605, 632, 842
HpyF10VI GCNNNNNNNGC 2 cut(s) 629, 839
HpyF3I CTNAG 3 cut(s) 182, 236, 377
Hsp92I GRCGYC 1 cut(s) 690
Hsp92II CATG 6 cut(s) 266, 460, 590, 632, 650, 821
HspAI GCGC 1 cut(s) 690
KasI GGCGCC 1 cut(s) 689
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 4 cut(s) 62, 109, 157, 325
LmnI GCTCC 2 cut(s) 370, 514
LpnPI CCDG 3 cut(s) 99, 126, 381
Lsp1109I GCAGC 1 cut(s) 406
LweI GCATC 1 cut(s) 851
MaeI CTAG 5 cut(s) 203, 393, 482, 495, 663
MaeIII GTNAC 3 cut(s) 293, 526, 680
MalI GATC 4 cut(s) 64, 111, 159, 327
MboI GATC 4 cut(s) 62, 109, 157, 325
MboII GAAGA 8 cut(s) 92, 180, 224, 293, 347, 370, 736, 890
MfeI CAATTG 1 cut(s) 846
MluCI AATT 7 cut(s) 84, 129, 162, 314, 788, 822, 846
Mly113I GGCGCC 1 cut(s) 690
MlyI GAGTC 1 cut(s) 82
MnlI CCTC 2 cut(s) 56, 922
MseI TTAA 7 cut(s) 15, 399, 414, 615, 653, 714, 918
MspCI CTTAAG 1 cut(s) 614
MspR9I CCNGG 1 cut(s) 114
MunI CAATTG 1 cut(s) 846
Mva1269I GAATGC 2 cut(s) 222, 367
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 1 cut(s) 903
MwoI GCNNNNNNNGC 2 cut(s) 629, 839
NarI GGCGCC 1 cut(s) 690
NdeII GATC 4 cut(s) 62, 109, 157, 325
NlaIII CATG 6 cut(s) 266, 460, 590, 632, 650, 821
NlaIV GGNNCC 1 cut(s) 691
NruI TCGCGA 1 cut(s) 903
NspI RCATGY 2 cut(s) 590, 632
PaeR7I CTCGAG 1 cut(s) 748
PagI TCATGA 1 cut(s) 262
PceI AGGCCT 1 cut(s) 246
PciI ACATGT 1 cut(s) 586
PctI GAATGC 2 cut(s) 222, 367
PfeI GAWTC 3 cut(s) 9, 491, 566
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 1 cut(s) 421
PleI GAGTC 1 cut(s) 81
PluTI GGCGCC 1 cut(s) 693
PpsI GAGTC 1 cut(s) 81
PscI ACATGT 1 cut(s) 586
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 691
PspXI VCTCGAGB 1 cut(s) 748
RruI TCGCGA 1 cut(s) 903
RsaI GTAC 1 cut(s) 598
RsaNI GTAC 1 cut(s) 597
SaqAI TTAA 7 cut(s) 15, 399, 414, 615, 653, 714, 918
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 4 cut(s) 62, 109, 157, 325
ScaI AGTACT 1 cut(s) 598
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 114
SfaNI GCATC 1 cut(s) 851
SfoI GGCGCC 1 cut(s) 691
Sfr274I CTCGAG 1 cut(s) 748
SlaI CTCGAG 1 cut(s) 748
SmlI CTYRAG 3 cut(s) 280, 614, 748
SmoI CTYRAG 3 cut(s) 280, 614, 748
Sse9I AATT 7 cut(s) 84, 129, 162, 314, 788, 822, 846
SseBI AGGCCT 1 cut(s) 246
SspDI GGCGCC 1 cut(s) 689
SspMI CTAG 5 cut(s) 203, 393, 482, 495, 663
StuI AGGCCT 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 112
StyI CCWWGG 1 cut(s) 392
TaqI TCGA 3 cut(s) 193, 199, 749
TasI AATT 7 cut(s) 84, 129, 162, 314, 788, 822, 846
TatI WGTACW 1 cut(s) 596
TfiI GAWTC 3 cut(s) 9, 491, 566
Tru1I TTAA 7 cut(s) 15, 399, 414, 615, 653, 714, 918
Tru9I TTAA 7 cut(s) 15, 399, 414, 615, 653, 714, 918
TseI GCWGC 1 cut(s) 419
TspDTI ATGAA 5 cut(s) 348, 504, 562, 755, 834
Vha464I CTTAAG 1 cut(s) 614
XapI RAATTY 1 cut(s) 129
XceI RCATGY 2 cut(s) 590, 632
XhoI CTCGAG 1 cut(s) 748
XmaJI CCTAGG 1 cut(s) 392
XspI CTAG 5 cut(s) 203, 393, 482, 495, 663
ZrmI AGTACT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.