FvH4_3g31623

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000122
Physical Location & Seq
Reverse (-)
25940927 .. 25942033
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31623.t1

Sequence Viewer

Length: 384 bp
ATGACAGATAAACCAAAGCCTAAAAGGTTCAAAAATCTGCATTCATGGTATAAAAATGATGCAACTAGTGAGAGTGCAAGTGGAAGCGGAAGCGGAAGCAGAAGTGGAAGTGGAATCAGAAGTGAAACCGGGAGTAGAAATGTGGATGTTGATTCTGTGAATGATGTTATGTTAGAAGAGTCCCCATCTATTCCACAAGAAGAGTCTTCATTTGTAGAGTGTCGTAATGATAGAATTGGGATAGAAAACAATTTTGATATCACTGCTCTTGAACGTGATCTGGGAATAAGACGACCAATATGCAGTTATCCTCAGAATTTGCGTGATAGTATTAGAAGAGCTTATATGATTGTGAGAAATTTTTATTACCTGGGATTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

128

Amino Acids

14.4

Weight (kDa)

6.59

Isoelectric Point (pI)

67.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 87, 93
AcsI RAATTY 2 cut(s) 316, 358
AgsI TTSAA 2 cut(s) 31, 272
AhlI ACTAGT 1 cut(s) 65
AjnI CCWGG 1 cut(s) 369
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
ApoI RAATTY 2 cut(s) 316, 358
AsuC2I CCSGG 1 cut(s) 130
BbsI GAAGAC 1 cut(s) 198
BccI CCATC 1 cut(s) 193
BcgI CGANNNNNNTGC 2 cut(s) 282, 316
BciT130I CCWGG 1 cut(s) 371
BcnI CCSGG 1 cut(s) 130
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 1 cut(s) 66
Bme1390I CCNGG 2 cut(s) 130, 371
BmrFI CCNGG 2 cut(s) 130, 371
BmsI GCATC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 198
BpuMI CCSGG 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 370
BseBI CCWGG 1 cut(s) 371
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 326
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 166
BsmI GAATGC 1 cut(s) 40
Bsp143I GATC 1 cut(s) 277
BspACI CCGC 2 cut(s) 87, 93
BspCNI CTCAG 1 cut(s) 325
BspQI GCTCTTC 1 cut(s) 331
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 371
Bst6I CTCTTC 3 cut(s) 171, 195, 331
BstDEI CTNAG 1 cut(s) 312
BstF5I GGATG 1 cut(s) 151
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstNI CCWGG 1 cut(s) 371
BstSCI CCNGG 2 cut(s) 128, 369
BstV2I GAAGAC 1 cut(s) 198
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
CviAII CATG 1 cut(s) 45
CviJI RGCY 2 cut(s) 19, 341
CviKI_1 RGCY 2 cut(s) 19, 341
DdeI CTNAG 1 cut(s) 312
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
Eam1104I CTCTTC 3 cut(s) 171, 195, 331
EarI CTCTTC 3 cut(s) 171, 195, 331
Eco32I GATATC 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 369
EcoRV GATATC 1 cut(s) 259
FaeI CATG 1 cut(s) 48
FaiI YATR 6 cut(s) 46, 51, 170, 301, 345, 347
FaqI GGGAC 1 cut(s) 166
FatI CATG 1 cut(s) 44
FokI GGATG 1 cut(s) 158
FspBI CTAG 1 cut(s) 66
HapII CCGG 1 cut(s) 129
Hin1II CATG 1 cut(s) 48
HinfI GANTC 4 cut(s) 114, 152, 179, 203
HpaII CCGG 1 cut(s) 129
Hpy188I TCNGA 2 cut(s) 119, 315
Hpy188III TCNNGA 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 4 cut(s) 40, 62, 77, 303
HpyF3I CTNAG 1 cut(s) 312
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 1 cut(s) 48
Kzo9I GATC 1 cut(s) 277
LguI GCTCTTC 1 cut(s) 331
LpnPI CCDG 3 cut(s) 142, 266, 356
LweI GCATC 1 cut(s) 49
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 274
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MboII GAAGA 4 cut(s) 188, 198, 212, 348
MluCI AATT 4 cut(s) 234, 250, 316, 358
MlyI GAGTC 2 cut(s) 188, 212
MnlI CCTC 1 cut(s) 321
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 2 cut(s) 130, 371
Mva1269I GAATGC 1 cut(s) 40
MvaI CCWGG 1 cut(s) 371
NciI CCSGG 1 cut(s) 130
NdeII GATC 1 cut(s) 277
NlaIII CATG 1 cut(s) 48
PciSI GCTCTTC 1 cut(s) 331
PctI GAATGC 1 cut(s) 40
PfeI GAWTC 2 cut(s) 114, 152
PleI GAGTC 2 cut(s) 187, 211
PpsI GAGTC 2 cut(s) 187, 211
Psp6I CCWGG 1 cut(s) 369
PspGI CCWGG 1 cut(s) 369
SapI GCTCTTC 1 cut(s) 331
Sau3AI GATC 1 cut(s) 277
SchI GAGTC 2 cut(s) 188, 212
ScrFI CCNGG 2 cut(s) 130, 371
SetI ASST 4 cut(s) 29, 277, 343, 372
SfaNI GCATC 1 cut(s) 49
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 4 cut(s) 234, 250, 316, 358
SsiI CCGC 2 cut(s) 87, 93
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 128, 369
TaiI ACGT 1 cut(s) 277
TasI AATT 4 cut(s) 234, 250, 316, 358
TfiI GAWTC 2 cut(s) 114, 152
TscAI CASTG 1 cut(s) 268
TspDTI ATGAA 2 cut(s) 33, 198
TspRI CASTG 1 cut(s) 268
XapI RAATTY 2 cut(s) 316, 358
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.