pycom04g01290

Zinc finger MYM-type protein 1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
1153690 .. 1154493
804 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g01290.3

Sequence Viewer

Length: 480 bp
ATGTGTAGTTTAGAAATAAGAAATATGGAAAGATTTTTCAAGCCAAAACCAATAGCACCATCTACTTGTTCGGGTAGTTCGAGCTCAAGACAAAATGAGTGTGACATTGATTTTAATAATCTTGAGAGAGACCCGGGAAAAAGAATTCGAATGAAGGACTATCCTTCTAATATTCAAGATGAGGTCCGCAGAGCATATTTGCAAATGGGACCTTGTAGGCCTACAAAGTATGAGTTCCCATACACTTTGCATATGCGGCATTTTTTGGCTTTGGTTTTACCGGTTGCAACTGCTTCAGTGGAGAGGGCATTTTCCGCTATGAATATCATTAAGGGTCCACTTCGCAACAAAATGGGAGATCAATGGTTGAGTGACAGCTTAGTTGTTTACATTGAGAAAGATGTTTTTTCATGTATTGGTAATGAAGCTATCATGGAACATTTTCAGACCATGAAACCTCGTCGTGGACGCTTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

160

Amino Acids

18.43

Weight (kDa)

9.2

Isoelectric Point (pI)

52.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 187, 256, 315
AcsI RAATTY 1 cut(s) 144
AcuI CTGAAG 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 464
AgeI ACCGGT 1 cut(s) 280
AgsI TTSAA 3 cut(s) 40, 176, 475
AluBI AGCT 3 cut(s) 84, 378, 428
AluI AGCT 3 cut(s) 84, 378, 428
Alw21I GWGCWC 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 123
Ama87I CYCGRG 1 cut(s) 133
AoxI GGCC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 144
AsiGI ACCGGT 1 cut(s) 280
Asp700I GAANNNNTTC 1 cut(s) 441
AspS9I GGNCC 3 cut(s) 184, 209, 335
AsuC2I CCSGG 2 cut(s) 134, 135
AsuII TTCGAA 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 133
AvaII GGWCC 3 cut(s) 184, 209, 335
BanII GRGCYC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 86
BccI CCATC 1 cut(s) 67
BcnI CCSGG 2 cut(s) 134, 135
BcoDI GTCTC 1 cut(s) 123
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
Bme1390I CCNGG 2 cut(s) 134, 135
Bme18I GGWCC 3 cut(s) 184, 209, 335
BmeT110I CYCGRG 1 cut(s) 133
BmgT120I GGNCC 3 cut(s) 184, 209, 335
BmiI GGNNCC 2 cut(s) 210, 336
BmrFI CCNGG 2 cut(s) 134, 135
Bpu14I TTCGAA 1 cut(s) 148
BpuEI CTTGAG 2 cut(s) 70, 143
BpuMI CCSGG 2 cut(s) 134, 135
BsaI GGTCTC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 133
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse118I RCCGGY 1 cut(s) 280
BseDI CCNNGG 1 cut(s) 133
BseLI CCNNNNNNNGG 1 cut(s) 464
BshFI GGCC 1 cut(s) 220
BshTI ACCGGT 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 86
BsiHKCI CYCGRG 1 cut(s) 133
BsiSI CCGG 2 cut(s) 134, 281
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 222
BsnI GGCC 1 cut(s) 220
Bso31I GGTCTC 1 cut(s) 123
BsoBI CYCGRG 1 cut(s) 133
Bsp119I TTCGAA 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 86
Bsp143I GATC 1 cut(s) 358
BspACI CCGC 3 cut(s) 187, 256, 315
BspANI GGCC 1 cut(s) 220
BspLI GGNNCC 2 cut(s) 210, 336
BspT104I TTCGAA 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 1 cut(s) 358
BstBI TTCGAA 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 379
BstKTI GATC 1 cut(s) 361
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 1 cut(s) 358
BstMWI GCNNNNNNNGC 2 cut(s) 256, 314
BstSCI CCNGG 2 cut(s) 132, 133
BsuRI GGCC 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 303
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 3 cut(s) 184, 209, 335
Cfr9I CCCGGG 1 cut(s) 133
CspAI ACCGGT 1 cut(s) 280
CviAII CATG 3 cut(s) 411, 433, 451
CviJI RGCY 6 cut(s) 43, 84, 220, 269, 378, 428
CviKI_1 RGCY 6 cut(s) 43, 84, 220, 269, 378, 428
DdeI CTNAG 1 cut(s) 379
DpnI GATC 1 cut(s) 360
DpnII GATC 1 cut(s) 358
Ecl136II GAGCTC 1 cut(s) 84
Eco147I AGGCCT 1 cut(s) 220
Eco24I GRGCYC 1 cut(s) 86
Eco31I GGTCTC 1 cut(s) 123
Eco47I GGWCC 3 cut(s) 184, 209, 335
Eco53kI GAGCTC 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 279
Eco88I CYCGRG 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 84
EcoO109I RGGNCCY 1 cut(s) 209
EcoRI GAATTC 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 86
FaeI CATG 3 cut(s) 414, 436, 454
FaqI GGGAC 1 cut(s) 222
FatI CATG 3 cut(s) 410, 432, 450
FauNDI CATATG 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 257
FriOI GRGCYC 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 257
GluI GCNGC 1 cut(s) 257
HaeIII GGCC 1 cut(s) 220
HapII CCGG 2 cut(s) 134, 281
Hin1II CATG 3 cut(s) 414, 436, 454
HpaII CCGG 2 cut(s) 134, 281
Hpy166II GTNNAC 3 cut(s) 338, 388, 467
Hpy188I TCNGA 1 cut(s) 447
Hpy188III TCNNGA 3 cut(s) 87, 122, 176
Hpy8I GTNNAC 3 cut(s) 338, 388, 467
Hpy99I CGWCG 1 cut(s) 465
HpyAV CCTTC 2 cut(s) 148, 174
HpyCH4V TGCA 3 cut(s) 202, 250, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 256, 314
HpyF3I CTNAG 1 cut(s) 379
Hsp92II CATG 3 cut(s) 414, 436, 454
Kzo9I GATC 1 cut(s) 358
LpnPI CCDG 2 cut(s) 147, 294
MaeIII GTNAC 2 cut(s) 101, 371
MalI GATC 1 cut(s) 360
MboI GATC 1 cut(s) 358
MhlI GDGCHC 1 cut(s) 86
MluCI AATT 2 cut(s) 144, 475
MnlI CCTC 3 cut(s) 175, 297, 468
MroXI GAANNNNTTC 1 cut(s) 441
MseI TTAA 2 cut(s) 114, 330
MspI CCGG 2 cut(s) 134, 281
MspR9I CCNGG 2 cut(s) 134, 135
MwoI GCNNNNNNNGC 2 cut(s) 256, 314
NciI CCSGG 2 cut(s) 134, 135
NdeI CATATG 1 cut(s) 252
NdeII GATC 1 cut(s) 358
NlaIII CATG 3 cut(s) 414, 436, 454
NlaIV GGNNCC 2 cut(s) 210, 336
NmuCI GTSAC 2 cut(s) 101, 371
NspV TTCGAA 1 cut(s) 148
PceI AGGCCT 1 cut(s) 220
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 441
PinAI ACCGGT 1 cut(s) 280
PkrI GCNGC 1 cut(s) 258
PpuMI RGGWCCY 1 cut(s) 209
Psp124BI GAGCTC 1 cut(s) 86
Psp5II RGGWCCY 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 210, 336
PspPI GGNCC 3 cut(s) 184, 209, 335
PspPPI RGGWCCY 1 cut(s) 209
SacI GAGCTC 1 cut(s) 86
SaqAI TTAA 2 cut(s) 114, 330
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 1 cut(s) 358
Sau96I GGNCC 3 cut(s) 184, 209, 335
ScrFI CCNGG 2 cut(s) 134, 135
SduI GDGCHC 1 cut(s) 86
SetI ASST 6 cut(s) 86, 186, 214, 380, 430, 460
SfuI TTCGAA 1 cut(s) 148
SinI GGWCC 3 cut(s) 184, 209, 335
SmaI CCCGGG 1 cut(s) 135
SmlI CTYRAG 2 cut(s) 85, 122
SmoI CTYRAG 2 cut(s) 85, 122
Sse9I AATT 2 cut(s) 144, 475
SseBI AGGCCT 1 cut(s) 220
SsiI CCGC 3 cut(s) 187, 256, 315
SspI AATATT 1 cut(s) 172
SstI GAGCTC 1 cut(s) 86
StuI AGGCCT 1 cut(s) 220
StyD4I CCNGG 2 cut(s) 132, 133
TaqI TCGA 2 cut(s) 80, 148
TasI AATT 2 cut(s) 144, 475
TauI GCSGC 1 cut(s) 259
Tru1I TTAA 2 cut(s) 114, 330
Tru9I TTAA 2 cut(s) 114, 330
TscAI CASTG 1 cut(s) 303
TseFI GTSAC 2 cut(s) 101, 371
Tsp45I GTSAC 2 cut(s) 101, 371
TspDTI ATGAA 5 cut(s) 167, 335, 399, 438, 467
TspMI CCCGGG 1 cut(s) 133
TspRI CASTG 1 cut(s) 303
VpaK11BI GGWCC 3 cut(s) 184, 209, 335
XapI RAATTY 1 cut(s) 144
XmaI CCCGGG 1 cut(s) 133
XmnI GAANNNNTTC 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.