FvH4_4g00251

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000122
Physical Location & Seq
Forward (+)
266203 .. 268783
2581 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00251.t1

Sequence Viewer

Length: 1065 bp
ATGTTTTCTTCCATAATTGATGTGCTAGATGAAGTTGCATTTGACAAAGTAGGCTCTGATCAGAAACATGATGCATTTATTTCGTTGGGGCTGTTACAATCTTTTGATTGCATATTTAGCTTACACTTGATGAGGATTGTACTTGGAATTAGTCATGAACTGTCGCAAGCCTTACAAAGAGATGATCAGGATATAGTAAATGCAATGGATTTAGTAAAAATATGCAAGAAAAAATTGCAGGATATGAGGGATAATGGATGGGATTCTTTACTAGATCAAGTTGTTATGTTTTGTGGGAAAGAAAATATCATGGTTCCTAACATGAGTGAGCAGCTTCTATGTCCATGGAAATCCAAGCGTAAAAATCCAGAAATCAAAAATTTGCACTATTATCGTTTTGACTTCTTTTGTGCTGTGATAGATCTCCAACTACAAGAGTTGAACAATCGTTTCAATGAGGCCAATACAGAGCTACTCCTCTGCCTTGCTTGTTTAAGTCCGAATGATACATTTTCTTGTTTTAACAAGGAACGTTTGATGCATCTTGCTCACTTATATCCGGCTGATTTTTCTACATCGGATTTGTTGATACTAGAGTCACAACTTGATATTTACATTGATGATATGCAGTCTAACTCTAAGTTTCAAAACATGCATGGAATATCTGATCTAGCACTGAAACTTATGGCAAGCTTATTACTGACTGCAGATTGGGCAGGCAATATTACTCACTACATGTCTATTTCGGGCTATTTCACATTTGTGGGATGTAAGTTGGTCACTTGGAAGAGCAAGAAACAAAATCTAGTAGCTCGTTCTAATGCTGAAACACAGTATAGAGCTGCAATTGAGATTGATCACAATCCCGTTCAACATGATCGAAGGAAACATGTGGAAGTAGATCGACATTTCATCAAAGAGAAGTTGGATGCACAAGTCATCATGTTTCCTTTTGTTCCTTCTGATGAGCAATTGGCAGATGTCCTTACGAAAGCTCTTTCGAATAAAGCCTTTTGTGACTCATTAGACAAGTTTGACATTTGTGATTTGTATGCGCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

355

Amino Acids

40.7

Weight (kDa)

5.35

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 532
AcsI RAATTY 1 cut(s) 379
AfaI GTAC 1 cut(s) 141
AflIII ACRYGT 2 cut(s) 735, 889
AgsI TTSAA 4 cut(s) 442, 454, 647, 872
AleI CACNNNNGTG 1 cut(s) 761
AluBI AGCT 7 cut(s) 120, 334, 472, 693, 812, 842, 995
AluI AGCT 7 cut(s) 120, 334, 472, 693, 812, 842, 995
AoxI GGCC 1 cut(s) 459
ApeKI GCWGC 2 cut(s) 331, 842
ApoI RAATTY 1 cut(s) 379
AspLEI GCGC 1 cut(s) 1057
AsuII TTCGAA 1 cut(s) 1001
BaeI ACNNNNGTAYC 2 cut(s) 581, 614
BbvI GCAGC 2 cut(s) 343, 829
BccI CCATC 1 cut(s) 252
BcgI CGANNNNNNTGC 4 cut(s) 63, 97, 374, 408
BclI TGATCA 3 cut(s) 58, 184, 856
BfaI CTAG 5 cut(s) 26, 272, 593, 671, 806
BfmI CTRYAG 1 cut(s) 705
BglII AGATCT 1 cut(s) 421
BisI GCNGC 2 cut(s) 332, 843
BlsI GCNGC 2 cut(s) 333, 844
BmiI GGNNCC 1 cut(s) 315
BmsI GCATC 4 cut(s) 61, 528, 550, 919
Bpu14I TTCGAA 1 cut(s) 1001
BsaBI GATNNNNATC 1 cut(s) 861
BsaJI CCNNGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 210
Bse8I GATNNNNATC 1 cut(s) 861
BseDI CCNNGG 1 cut(s) 344
BseGI GGATG 3 cut(s) 263, 773, 934
BseJI GATNNNNATC 1 cut(s) 861
BseMI GCAATG 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 467
BseXI GCAGC 2 cut(s) 343, 829
BshFI GGCC 1 cut(s) 461
BsiSI CCGG 1 cut(s) 560
BsnI GGCC 1 cut(s) 461
Bsp119I TTCGAA 1 cut(s) 1001
Bsp143I GATC 8 cut(s) 58, 184, 274, 421, 667, 856, 877, 901
Bsp19I CCATGG 1 cut(s) 344
BspANI GGCC 1 cut(s) 461
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 315
BspMAI CTGCAG 1 cut(s) 709
BspQI GCTCTTC 1 cut(s) 782
BspT104I TTCGAA 1 cut(s) 1001
BsrDI GCAATG 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 344
BssMI GATC 8 cut(s) 58, 184, 274, 421, 667, 856, 877, 901
BssT1I CCWWGG 1 cut(s) 344
Bst4CI ACNGT 2 cut(s) 162, 834
Bst6I CTCTTC 1 cut(s) 782
BstBI TTCGAA 1 cut(s) 1001
BstC8I GCNNGC 3 cut(s) 168, 691, 718
BstDEI CTNAG 1 cut(s) 639
BstDSI CCRYGG 1 cut(s) 344
BstF5I GGATG 3 cut(s) 263, 773, 934
BstHHI GCGC 1 cut(s) 1057
BstKTI GATC 8 cut(s) 61, 187, 277, 424, 670, 859, 880, 904
BstMBI GATC 8 cut(s) 58, 184, 274, 421, 667, 856, 877, 901
BstMWI GCNNNNNNNGC 2 cut(s) 117, 713
BstNSI RCATGY 3 cut(s) 655, 739, 893
BstSFI CTRYAG 1 cut(s) 705
BstV1I GCAGC 2 cut(s) 343, 829
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 1 cut(s) 461
BtgI CCRYGG 1 cut(s) 344
BtsCI GGATG 3 cut(s) 263, 773, 934
BtsIMutI CAGTG 1 cut(s) 674
Cac8I GCNNGC 3 cut(s) 168, 691, 718
CciI TCATGA 1 cut(s) 154
CfoI GCGC 1 cut(s) 1057
Csp6I GTAC 1 cut(s) 140
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 1 cut(s) 639
DpnI GATC 8 cut(s) 60, 186, 276, 423, 669, 858, 879, 903
DpnII GATC 8 cut(s) 58, 184, 274, 421, 667, 856, 877, 901
Eam1104I CTCTTC 1 cut(s) 782
EarI CTCTTC 1 cut(s) 782
Eco130I CCWWGG 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 344
EcoT22I ATGCAT 3 cut(s) 76, 543, 657
ErhI CCWWGG 1 cut(s) 344
FbaI TGATCA 3 cut(s) 58, 184, 856
Fnu4HI GCNGC 2 cut(s) 332, 843
FokI GGATG 3 cut(s) 270, 780, 941
Fsp4HI GCNGC 2 cut(s) 332, 843
FspBI CTAG 5 cut(s) 26, 272, 593, 671, 806
GlaI GCGC 1 cut(s) 1056
GluI GCNGC 2 cut(s) 332, 843
HaeIII GGCC 1 cut(s) 461
HapII CCGG 1 cut(s) 560
HhaI GCGC 1 cut(s) 1057
Hin6I GCGC 1 cut(s) 1055
HinP1I GCGC 1 cut(s) 1055
HindIII AAGCTT 1 cut(s) 691
HinfI GANTC 3 cut(s) 263, 596, 1019
HpaII CCGG 1 cut(s) 560
Hpy188I TCNGA 6 cut(s) 58, 63, 501, 580, 667, 964
Hpy188III TCNNGA 3 cut(s) 155, 188, 368
HpyAV CCTTC 2 cut(s) 876, 969
HpyCH4III ACNGT 2 cut(s) 162, 834
HpyCH4IV ACGT 1 cut(s) 532
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 713
HpyF3I CTNAG 1 cut(s) 639
HpySE526I ACGT 1 cut(s) 532
HspAI GCGC 1 cut(s) 1055
Ksp22I TGATCA 3 cut(s) 58, 184, 856
Kzo9I GATC 8 cut(s) 58, 184, 274, 421, 667, 856, 877, 901
LguI GCTCTTC 1 cut(s) 782
LpnPI CCDG 5 cut(s) 173, 224, 381, 573, 702
Lsp1109I GCAGC 2 cut(s) 343, 829
LweI GCATC 4 cut(s) 61, 528, 550, 919
MaeI CTAG 5 cut(s) 26, 272, 593, 671, 806
MaeII ACGT 1 cut(s) 532
MaeIII GTNAC 4 cut(s) 93, 597, 778, 1016
MalI GATC 8 cut(s) 60, 186, 276, 423, 669, 858, 879, 903
MboI GATC 8 cut(s) 58, 184, 274, 421, 667, 856, 877, 901
MboII GAAGA 1 cut(s) 799
MfeI CAATTG 2 cut(s) 846, 971
MflI RGATCY 1 cut(s) 421
MluCI AATT 6 cut(s) 15, 147, 233, 379, 846, 971
MlyI GAGTC 2 cut(s) 605, 1013
MmeI TCCRAC 2 cut(s) 451, 906
MnlI CCTC 4 cut(s) 126, 240, 451, 488
Mph1103I ATGCAT 3 cut(s) 76, 543, 657
MseI TTAA 2 cut(s) 494, 522
MslI CAYNNNNRTG 1 cut(s) 761
MspI CCGG 1 cut(s) 560
MunI CAATTG 2 cut(s) 846, 971
MwoI GCNNNNNNNGC 2 cut(s) 117, 713
NcoI CCATGG 1 cut(s) 344
NdeII GATC 8 cut(s) 58, 184, 274, 421, 667, 856, 877, 901
NlaIV GGNNCC 1 cut(s) 315
NmuCI GTSAC 3 cut(s) 597, 778, 1016
NsiI ATGCAT 3 cut(s) 76, 543, 657
NspI RCATGY 3 cut(s) 655, 739, 893
NspV TTCGAA 1 cut(s) 1001
OliI CACNNNNGTG 1 cut(s) 761
PagI TCATGA 1 cut(s) 154
PciI ACATGT 2 cut(s) 735, 889
PciSI GCTCTTC 1 cut(s) 782
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 2 cut(s) 333, 844
PleI GAGTC 2 cut(s) 604, 1013
PpsI GAGTC 2 cut(s) 604, 1013
PscI ACATGT 2 cut(s) 735, 889
Psp1406I AACGTT 1 cut(s) 532
PspN4I GGNNCC 1 cut(s) 315
PstI CTGCAG 1 cut(s) 709
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 761
SapI GCTCTTC 1 cut(s) 782
SaqAI TTAA 2 cut(s) 494, 522
SatI GCNGC 2 cut(s) 332, 843
Sau3AI GATC 8 cut(s) 58, 184, 274, 421, 667, 856, 877, 901
SchI GAGTC 2 cut(s) 605, 1013
SetI ASST 8 cut(s) 122, 336, 474, 535, 695, 814, 844, 997
SfaNI GCATC 4 cut(s) 61, 528, 550, 919
SfcI CTRYAG 1 cut(s) 705
SfuI TTCGAA 1 cut(s) 1001
SmiMI CAYNNNNRTG 1 cut(s) 761
Sse9I AATT 6 cut(s) 15, 147, 233, 379, 846, 971
SspI AATATT 1 cut(s) 724
SspMI CTAG 5 cut(s) 26, 272, 593, 671, 806
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 2 cut(s) 162, 834
TaiI ACGT 1 cut(s) 535
TaqI TCGA 3 cut(s) 880, 904, 1001
TasI AATT 6 cut(s) 15, 147, 233, 379, 846, 971
TatI WGTACW 1 cut(s) 139
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 494, 522
Tru9I TTAA 2 cut(s) 494, 522
TscAI CASTG 1 cut(s) 681
TseFI GTSAC 3 cut(s) 597, 778, 1016
TseI GCWGC 2 cut(s) 331, 842
Tsp45I GTSAC 3 cut(s) 597, 778, 1016
TspDTI ATGAA 3 cut(s) 45, 171, 901
TspRI CASTG 1 cut(s) 681
XapI RAATTY 1 cut(s) 379
XceI RCATGY 3 cut(s) 655, 739, 893
XspI CTAG 5 cut(s) 26, 272, 593, 671, 806
Zsp2I ATGCAT 3 cut(s) 76, 543, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.