Rmu_sc0001136.1_g000009

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001136.1
OG0000122
Physical Location & Seq
Reverse (-)
44178 .. 47054
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001136.1_g000009.1.cds

Sequence Viewer

Length: 999 bp
atggaattctgtggtaaagagatcacaaatgcgatgttgattgagaagactctctctaccttccccgtctctgcattgatggttgctaagaactatcgaatcgatgttactgctggacggaccacaaggtttcaggagctcattggagccatgaatgtcgatataaaagctgtcacattgaaaaatgctcttgaaaatttgaagttaacatcacctgatattcagaaggacattgtaagtgctatttcagttgaaattgtcaatacaattgctagtgaacttggtgattctttatttgccattcttgttgatgaatctcgagatatgtcctcaaatgtgcaaatggccattgtactacggtatgtggatgatggaaatgtgattgagcgttttgtgggtattgagcatgttacgaatacgaatgctatcacattgaaggaatctattgatgattttttaatggccaagaatcatgatttggtttcagatttctttactttggttggtaatgtggtgaatgtggttggagcatcagctaaaagacgagacattcttcgagaaaaacatggtgatgacattttagaagcactagaaaacaatgagctttcaagtggtcaaggcttgaatcaggaaactagtgtgaagcgaactactcaagggaaatcaaagcgcaatgctcaagtaatcacaaacttgcatcattactgtgttcagttgttttatactgttattgataatcagcttcaagagttggatgatcgtttcaacgagaagaatactgagttgcttctttgtatgtcatgtttgaacccgataaatttattctcaacttttgacaaagaaaagttgataaagctggaccaatattatcctcaagatttttctgcacgtgatctagaggtacttgatgatcaacttgaaaattacatagtagacatgcgctccaacattgagttttctgaattgaagggaattactgatcttgcaaaaaagatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

332

Amino Acids

37.45

Weight (kDa)

4.81

Isoelectric Point (pI)

33.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 933
AcoI YGGCCR 2 cut(s) 345, 462
AcsI RAATTY 3 cut(s) 5, 196, 817
AcvI CACGTG 1 cut(s) 890
AfaI GTAC 2 cut(s) 354, 903
AhlI ACTAGT 1 cut(s) 635
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AluBI AGCT 6 cut(s) 139, 170, 536, 604, 742, 856
AluI AGCT 6 cut(s) 139, 170, 536, 604, 742, 856
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 2 cut(s) 73, 540
Ama87I CYCGRG 1 cut(s) 318
AoxI GGCC 2 cut(s) 345, 462
ApoI RAATTY 3 cut(s) 5, 196, 817
AspLEI GCGC 2 cut(s) 672, 942
AspS9I GGNCC 2 cut(s) 120, 859
AsuHPI GGTGA 4 cut(s) 204, 296, 526, 581
AvaI CYCGRG 1 cut(s) 318
AvaII GGWCC 2 cut(s) 120, 859
BalI TGGCCA 2 cut(s) 347, 464
BanII GRGCYC 1 cut(s) 141
BbrPI CACGTG 1 cut(s) 890
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 141
BccI CCATC 2 cut(s) 73, 365
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BclI TGATCA 1 cut(s) 910
BcoDI GTCTC 2 cut(s) 73, 540
BcuI ACTAGT 1 cut(s) 635
BfaI CTAG 4 cut(s) 273, 590, 636, 896
Bme18I GGWCC 2 cut(s) 120, 859
BmeT110I CYCGRG 1 cut(s) 318
BmgT120I GGNCC 2 cut(s) 120, 859
BmiI GGNNCC 1 cut(s) 148
BmsI GCATC 2 cut(s) 539, 706
BpiI GAAGAC 1 cut(s) 53
BpuEI CTTGAG 3 cut(s) 639, 663, 858
Bsa29I ATCGAT 1 cut(s) 102
BsaAI YACGTR 1 cut(s) 890
BsaXI ACNNNNNCTCC 2 cut(s) 926, 956
Bse3DI GCAATG 1 cut(s) 679
BseCI ATCGAT 1 cut(s) 102
BseGI GGATG 2 cut(s) 373, 760
BseMI GCAATG 1 cut(s) 679
BseMII CTCAG 1 cut(s) 771
BsgI GTGCAG 1 cut(s) 870
BshFI GGCC 2 cut(s) 347, 464
BshVI ATCGAT 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 318
BsmAI GTCTC 2 cut(s) 73, 540
BsmBI CGTCTC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 427
BsnI GGCC 2 cut(s) 347, 464
BsoBI CYCGRG 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 5 cut(s) 21, 757, 892, 910, 979
BspANI GGCC 2 cut(s) 347, 464
BspCNI CTCAG 1 cut(s) 772
BspDI ATCGAT 1 cut(s) 102
BspHI TCATGA 1 cut(s) 472
BspLI GGNNCC 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 679
BssMI GATC 5 cut(s) 21, 757, 892, 910, 979
Bst4CI ACNGT 3 cut(s) 360, 707, 727
BstBAI YACGTR 1 cut(s) 890
BstDEI CTNAG 2 cut(s) 87, 780
BstF5I GGATG 2 cut(s) 373, 760
BstHHI GCGC 2 cut(s) 672, 942
BstKTI GATC 5 cut(s) 24, 760, 895, 913, 982
BstMAI GTCTC 2 cut(s) 73, 540
BstMBI GATC 5 cut(s) 21, 757, 892, 910, 979
BstNSI RCATGY 2 cut(s) 410, 940
BstV2I GAAGAC 1 cut(s) 53
Bsu15I ATCGAT 1 cut(s) 102
BsuRI GGCC 2 cut(s) 347, 464
BsuTUI ATCGAT 1 cut(s) 102
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 2 cut(s) 373, 760
CciI TCATGA 1 cut(s) 472
CfoI GCGC 2 cut(s) 672, 942
Cfr13I GGNCC 2 cut(s) 120, 859
ClaI ATCGAT 1 cut(s) 102
Csp6I GTAC 2 cut(s) 353, 902
CviAII CATG 6 cut(s) 151, 407, 473, 566, 801, 937
CviQI GTAC 2 cut(s) 353, 902
DdeI CTNAG 2 cut(s) 87, 780
DpnI GATC 5 cut(s) 23, 759, 894, 912, 981
DpnII GATC 5 cut(s) 21, 757, 892, 910, 979
EaeI YGGCCR 2 cut(s) 345, 462
Ecl136II GAGCTC 1 cut(s) 139
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 2 cut(s) 120, 859
Eco53kI GAGCTC 1 cut(s) 139
Eco72I CACGTG 1 cut(s) 890
Eco88I CYCGRG 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 5
EcoT38I GRGCYC 1 cut(s) 141
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 6 cut(s) 154, 410, 476, 569, 804, 940
FatI CATG 6 cut(s) 150, 406, 472, 565, 800, 936
FbaI TGATCA 1 cut(s) 910
FblI GTMKAC 1 cut(s) 933
FokI GGATG 2 cut(s) 380, 767
FriOI GRGCYC 1 cut(s) 141
FspBI CTAG 4 cut(s) 273, 590, 636, 896
GlaI GCGC 2 cut(s) 671, 941
HaeIII GGCC 2 cut(s) 347, 464
HhaI GCGC 2 cut(s) 672, 942
Hin1II CATG 6 cut(s) 154, 410, 476, 569, 804, 940
Hin6I GCGC 2 cut(s) 670, 940
HinP1I GCGC 2 cut(s) 670, 940
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 7 cut(s) 49, 99, 287, 314, 440, 469, 625
HpaI GTTAAC 1 cut(s) 207
HphI GGTGA 4 cut(s) 204, 296, 526, 581
Hpy166II GTNNAC 3 cut(s) 207, 278, 934
Hpy188I TCNGA 3 cut(s) 225, 487, 961
Hpy8I GTNNAC 3 cut(s) 207, 278, 934
HpyAV CCTTC 4 cut(s) 70, 220, 430, 961
HpyCH4III ACNGT 3 cut(s) 360, 707, 727
HpyCH4IV ACGT 1 cut(s) 889
HpyCH4V TGCA 5 cut(s) 74, 340, 697, 887, 986
HpyF3I CTNAG 2 cut(s) 87, 780
HpySE526I ACGT 1 cut(s) 889
Hsp92II CATG 6 cut(s) 154, 410, 476, 569, 804, 940
HspAI GCGC 2 cut(s) 670, 940
Ksp22I TGATCA 1 cut(s) 910
KspAI GTTAAC 1 cut(s) 207
Kzo9I GATC 5 cut(s) 21, 757, 892, 910, 979
LmnI GCTCC 4 cut(s) 136, 146, 527, 947
LpnPI CCDG 5 cut(s) 99, 119, 228, 614, 842
LweI GCATC 2 cut(s) 539, 706
MaeI CTAG 4 cut(s) 273, 590, 636, 896
MaeII ACGT 1 cut(s) 889
MaeIII GTNAC 3 cut(s) 106, 172, 409
MalI GATC 5 cut(s) 23, 759, 894, 912, 981
MboI GATC 5 cut(s) 21, 757, 892, 910, 979
MboII GAAGA 3 cut(s) 58, 545, 784
MfeI CAATTG 1 cut(s) 267
MhlI GDGCHC 1 cut(s) 141
MlsI TGGCCA 2 cut(s) 347, 464
MluCI AATT 8 cut(s) 5, 196, 255, 267, 817, 922, 962, 972
MluNI TGGCCA 2 cut(s) 347, 464
MlyI GAGTC 1 cut(s) 43
MmeI TCCRAC 3 cut(s) 505, 732, 969
MnlI CCTC 3 cut(s) 340, 882, 892
Mox20I TGGCCA 2 cut(s) 347, 464
MscI TGGCCA 2 cut(s) 347, 464
MseI TTAA 2 cut(s) 206, 458
MslI CAYNNNNRTG 2 cut(s) 570, 705
Msp20I TGGCCA 2 cut(s) 347, 464
MunI CAATTG 1 cut(s) 267
Mva1269I GAATGC 1 cut(s) 427
NdeII GATC 5 cut(s) 21, 757, 892, 910, 979
NlaIII CATG 6 cut(s) 154, 410, 476, 569, 804, 940
NlaIV GGNNCC 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 172
NspI RCATGY 2 cut(s) 410, 940
PaeR7I CTCGAG 1 cut(s) 318
PagI TCATGA 1 cut(s) 472
PctI GAATGC 1 cut(s) 427
PfeI GAWTC 6 cut(s) 99, 287, 314, 440, 469, 625
PleI GAGTC 1 cut(s) 43
PmaCI CACGTG 1 cut(s) 890
PmlI CACGTG 1 cut(s) 890
PpsI GAGTC 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 890
Psp124BI GAGCTC 1 cut(s) 141
PspCI CACGTG 1 cut(s) 890
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 2 cut(s) 120, 859
RsaI GTAC 2 cut(s) 354, 903
RsaNI GTAC 2 cut(s) 353, 902
RseI CAYNNNNRTG 2 cut(s) 570, 705
SacI GAGCTC 1 cut(s) 141
SaqAI TTAA 2 cut(s) 206, 458
Sau3AI GATC 5 cut(s) 21, 757, 892, 910, 979
Sau96I GGNCC 2 cut(s) 120, 859
SchI GAGTC 1 cut(s) 43
SduI GDGCHC 1 cut(s) 141
SfaNI GCATC 2 cut(s) 539, 706
Sfr274I CTCGAG 1 cut(s) 318
SinI GGWCC 2 cut(s) 120, 859
SlaI CTCGAG 1 cut(s) 318
SmiMI CAYNNNNRTG 2 cut(s) 570, 705
SmlI CTYRAG 4 cut(s) 318, 654, 678, 873
SmoI CTYRAG 4 cut(s) 318, 654, 678, 873
SpeI ACTAGT 1 cut(s) 635
Sse9I AATT 8 cut(s) 5, 196, 255, 267, 817, 922, 962, 972
SspI AATATT 1 cut(s) 866
SspMI CTAG 4 cut(s) 273, 590, 636, 896
SstI GAGCTC 1 cut(s) 141
TaaI ACNGT 3 cut(s) 360, 707, 727
TaiI ACGT 1 cut(s) 892
TaqI TCGA 5 cut(s) 97, 102, 159, 319, 556
TasI AATT 8 cut(s) 5, 196, 255, 267, 817, 922, 962, 972
TatI WGTACW 1 cut(s) 352
TfiI GAWTC 6 cut(s) 99, 287, 314, 440, 469, 625
Tru1I TTAA 2 cut(s) 206, 458
Tru9I TTAA 2 cut(s) 206, 458
TseFI GTSAC 1 cut(s) 172
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 2 cut(s) 167, 327
TspGWI ACGGA 1 cut(s) 133
VpaK11BI GGWCC 2 cut(s) 120, 859
XapI RAATTY 3 cut(s) 5, 196, 817
XbaI TCTAGA 1 cut(s) 895
XceI RCATGY 2 cut(s) 410, 940
XhoI CTCGAG 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 933
XspI CTAG 4 cut(s) 273, 590, 636, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.