Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho- Glu-tRNA(Gln)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| FGAR-AT_N | PF18076 | 125 - 242 | 2.8e-21 | Formylglycinamide ribonucleotide amidotransferase N-terminal |
| FGAR-AT_linker | PF18072 | 268 - 317 | 4.8e-11 | Formylglycinamide ribonucleotide amidotransferase linker domain |
| AIRS_C | PF02769 | 531 - 685 | 1.9e-27 | AIR synthase related protein, C-terminal domain |
| FGAR-AT_PurM_N-like | PF22689 | 756 - 909 | 2.1e-52 | FGAR-AT PurM_N-like domain |
| AIRS_C | PF02769 | 940 - 1070 | 5.9e-17 | AIR synthase related protein, C-terminal domain |
| GATase_5 | PF13507 | 1138 - 1407 | 3.6e-105 | CobB/CobQ-like glutamine amidotransferase domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 4155, 4215 |
| AccBSI | CCGCTC | 1 cut(s) | 2173 |
| AccI | GTMKAC | 2 cut(s) | 468, 2292 |
| AccII | CGCG | 2 cut(s) | 276, 1968 |
| AciI | CCGC | 9 cut(s) | 130, 889, 1507, 1682, 2173, 2808, 2818, 3470, 4061 |
| AclWI | GGATC | 9 cut(s) | 666, 1339, 1346, 1390, 2099, 2438, 2451, 3773, 3786 |
| AcoI | YGGCCR | 4 cut(s) | 46, 1669, 2805, 2956 |
| AcsI | RAATTY | 8 cut(s) | 32, 457, 969, 1375, 1439, 2165, 2346, 3287 |
| AcuI | CTGAAG | 3 cut(s) | 419, 2921, 3099 |
| AcvI | CACGTG | 1 cut(s) | 1154 |
| AfaI | GTAC | 8 cut(s) | 629, 765, 1704, 2136, 2728, 3238, 3892, 4136 |
| AfeI | AGCGCT | 2 cut(s) | 2273, 4115 |
| AflII | CTTAAG | 2 cut(s) | 422, 2234 |
| AflIII | ACRYGT | 2 cut(s) | 1143, 3255 |
| AgeI | ACCGGT | 1 cut(s) | 1111 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3859 |
| AhlI | ACTAGT | 2 cut(s) | 3269, 3836 |
| AjnI | CCWGG | 6 cut(s) | 863, 1120, 1216, 2209, 2698, 3739 |
| AleI | CACNNNNGTG | 1 cut(s) | 75 |
| Alw21I | GWGCWC | 4 cut(s) | 175, 1025, 3966, 4223 |
| Alw26I | GTCTC | 6 cut(s) | 434, 574, 1175, 1220, 1245, 1480 |
| AlwI | GGATC | 9 cut(s) | 666, 1339, 1346, 1390, 2099, 2438, 2451, 3773, 3786 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 61, 951 |
| Ama87I | CYCGRG | 1 cut(s) | 1072 |
| Aor51HI | AGCGCT | 2 cut(s) | 2273, 4115 |
| ApaI | GGGCCC | 1 cut(s) | 2340 |
| ApoI | RAATTY | 8 cut(s) | 32, 457, 969, 1375, 1439, 2165, 2346, 3287 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 3599, 3631 |
| AseI | ATTAAT | 3 cut(s) | 669, 813, 3027 |
| AsiGI | ACCGGT | 1 cut(s) | 1111 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 154, 3288 |
| AspLEI | GCGC | 4 cut(s) | 226, 1922, 2274, 4116 |
| AspS9I | GGNCC | 8 cut(s) | 58, 527, 1616, 2336, 2337, 3736, 3743, 4175 |
| AsuC2I | CCSGG | 1 cut(s) | 1871 |
| AvaI | CYCGRG | 1 cut(s) | 1072 |
| AvaII | GGWCC | 3 cut(s) | 527, 3736, 3743 |
| BaeGI | GKGCMC | 2 cut(s) | 2340, 2995 |
| BalI | TGGCCA | 3 cut(s) | 48, 1671, 2958 |
| BamHI | GGATCC | 2 cut(s) | 2443, 3778 |
| BanII | GRGCYC | 4 cut(s) | 387, 1277, 1452, 2340 |
| BauI | CACGAG | 1 cut(s) | 2187 |
| BbrPI | CACGTG | 1 cut(s) | 1154 |
| BbsI | GAAGAC | 1 cut(s) | 549 |
| Bbv12I | GWGCWC | 4 cut(s) | 175, 1025, 3966, 4223 |
| BceAI | ACGGC | 1 cut(s) | 1447 |
| BciT130I | CCWGG | 6 cut(s) | 865, 1122, 1218, 2211, 2700, 3741 |
| BciVI | GTATCC | 3 cut(s) | 1377, 3259, 4155 |
| BclI | TGATCA | 2 cut(s) | 1555, 2616 |
| BcnI | CCSGG | 1 cut(s) | 1871 |
| BcoDI | GTCTC | 6 cut(s) | 434, 574, 1175, 1220, 1245, 1480 |
| BcuI | ACTAGT | 2 cut(s) | 3269, 3836 |
| BfaI | CTAG | 9 cut(s) | 402, 1410, 1470, 1598, 2460, 3270, 3317, 3837, 4179 |
| BfmI | CTRYAG | 4 cut(s) | 1176, 1203, 2676, 3159 |
| BfoI | RGCGCY | 3 cut(s) | 227, 2275, 4117 |
| BfrI | CTTAAG | 2 cut(s) | 422, 2234 |
| BfuI | GTATCC | 3 cut(s) | 1377, 3259, 4155 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 3355, 3977 |
| BglII | AGATCT | 1 cut(s) | 847 |
| BlpI | GCTNAGC | 3 cut(s) | 2062, 2319, 3140 |
| BmcAI | AGTACT | 3 cut(s) | 2136, 3238, 3892 |
| Bme1390I | CCNGG | 7 cut(s) | 865, 1122, 1218, 1871, 2211, 2700, 3741 |
| Bme18I | GGWCC | 3 cut(s) | 527, 3736, 3743 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3859 |
| BmeT110I | CYCGRG | 1 cut(s) | 1072 |
| BmgT120I | GGNCC | 8 cut(s) | 58, 527, 1616, 2336, 2337, 3736, 3743, 4175 |
| BmiI | GGNNCC | 9 cut(s) | 753, 2338, 2339, 2445, 2697, 3737, 3738, 3780, 3981 |
| BmrFI | CCNGG | 7 cut(s) | 865, 1122, 1218, 1871, 2211, 2700, 3741 |
| BpiI | GAAGAC | 1 cut(s) | 549 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 2466, 2498, 4205, 4237 |
| BpmI | CTGGAG | 3 cut(s) | 2418, 3966, 4207 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2844 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 2062, 2319, 3140 |
| BpuEI | CTTGAG | 5 cut(s) | 159, 2147, 2903, 3017, 3732 |
| BpuMI | CCSGG | 1 cut(s) | 1871 |
| BsaAI | YACGTR | 1 cut(s) | 1154 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1865 |
| BsaI | GGTCTC | 1 cut(s) | 1175 |
| BsaWI | WCCGGW | 2 cut(s) | 1111, 3048 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2673, 2703 |
| Bse118I | RCCGGY | 3 cut(s) | 1111, 2387, 3816 |
| Bse1I | ACTGG | 5 cut(s) | 956, 967, 1270, 2401, 3983 |
| Bse3DI | GCAATG | 5 cut(s) | 690, 1136, 2460, 3454, 3709 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1865 |
| BseBI | CCWGG | 6 cut(s) | 865, 1122, 1218, 2211, 2700, 3741 |
| BseJI | GATNNNNATC | 1 cut(s) | 1865 |
| BseMI | GCAATG | 5 cut(s) | 690, 1136, 2460, 3454, 3709 |
| BseMII | CTCAG | 6 cut(s) | 270, 297, 354, 2333, 2390, 2858 |
| BseNI | ACTGG | 5 cut(s) | 956, 967, 1270, 2401, 3983 |
| BseRI | GAGGAG | 1 cut(s) | 821 |
| BseSI | GKGCMC | 2 cut(s) | 2340, 2995 |
| BseYI | CCCAGC | 2 cut(s) | 720, 3732 |
| BsgI | GTGCAG | 6 cut(s) | 101, 344, 1134, 1242, 1254, 1557 |
| Bsh1236I | CGCG | 2 cut(s) | 276, 1968 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1112 |
| BshTI | ACCGGT | 1 cut(s) | 1111 |
| BsiEI | CGRYCG | 1 cut(s) | 1112 |
| BsiHKAI | GWGCWC | 4 cut(s) | 175, 1025, 3966, 4223 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1072 |
| BsiSI | CCGG | 7 cut(s) | 452, 1112, 1870, 2108, 2388, 3049, 3817 |
| BslFI | GGGAC | 4 cut(s) | 263, 2052, 3266, 3722 |
| BsmAI | GTCTC | 6 cut(s) | 434, 574, 1175, 1220, 1245, 1480 |
| BsmFI | GGGAC | 4 cut(s) | 263, 2052, 3266, 3722 |
| BsmI | GAATGC | 2 cut(s) | 1791, 4210 |
| Bso31I | GGTCTC | 1 cut(s) | 1175 |
| BsoBI | CYCGRG | 1 cut(s) | 1072 |
| Bsp120I | GGGCCC | 1 cut(s) | 2336 |
| Bsp1286I | GDGCHC | 9 cut(s) | 175, 387, 1025, 1277, 1452, 2340, 2995, 3966, 4223 |
| Bsp1407I | TGTACA | 1 cut(s) | 1702 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 2062, 2319, 3140 |
| Bsp19I | CCATGG | 6 cut(s) | 990, 2661, 3497, 3913, 4139, 4184 |
| Bsp68I | TCGCGA | 1 cut(s) | 1968 |
| BspACI | CCGC | 9 cut(s) | 130, 889, 1507, 1682, 2173, 2808, 2818, 3470, 4061 |
| BspCNI | CTCAG | 6 cut(s) | 269, 298, 355, 2332, 2389, 2857 |
| BspFNI | CGCG | 2 cut(s) | 276, 1968 |
| BspHI | TCATGA | 2 cut(s) | 691, 1795 |
| BspLI | GGNNCC | 9 cut(s) | 753, 2338, 2339, 2445, 2697, 3737, 3738, 3780, 3981 |
| BspMAI | CTGCAG | 3 cut(s) | 1180, 2680, 3163 |
| BspPI | GGATC | 9 cut(s) | 666, 1339, 1346, 1390, 2099, 2438, 2451, 3773, 3786 |
| BspQI | GCTCTTC | 3 cut(s) | 1013, 3075, 3919 |
| BspTI | CTTAAG | 2 cut(s) | 422, 2234 |
| BspTNI | GGTCTC | 1 cut(s) | 1175 |
| BsrBI | CCGCTC | 1 cut(s) | 2173 |
| BsrDI | GCAATG | 5 cut(s) | 690, 1136, 2460, 3454, 3709 |
| BsrFI | RCCGGY | 3 cut(s) | 1111, 2387, 3816 |
| BsrGI | TGTACA | 1 cut(s) | 1702 |
| BsrI | ACTGG | 5 cut(s) | 956, 967, 1270, 2401, 3983 |
| BssAI | RCCGGY | 3 cut(s) | 1111, 2387, 3816 |
| BssSI | CACGAG | 1 cut(s) | 2187 |
| BssT1I | CCWWGG | 9 cut(s) | 990, 1343, 1801, 2661, 3497, 3913, 4050, 4139, 4184 |
| Bst2BI | CACGAG | 1 cut(s) | 2187 |
| Bst2UI | CCWGG | 6 cut(s) | 865, 1122, 1218, 2211, 2700, 3741 |
| Bst6I | CTCTTC | 6 cut(s) | 482, 873, 1013, 3065, 3075, 3919 |
| BstAFI | CTTAAG | 2 cut(s) | 422, 2234 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1295, 2672, 3479 |
| BstAUI | TGTACA | 1 cut(s) | 1702 |
| BstBAI | YACGTR | 1 cut(s) | 1154 |
| BstC8I | GCNNGC | 8 cut(s) | 113, 947, 1032, 1595, 1756, 2956, 3013, 3487 |
| BstDSI | CCRYGG | 7 cut(s) | 990, 2661, 3497, 3553, 3913, 4139, 4184 |
| BstFNI | CGCG | 2 cut(s) | 276, 1968 |
| BstH2I | RGCGCY | 3 cut(s) | 227, 2275, 4117 |
| BstHHI | GCGC | 4 cut(s) | 226, 1922, 2274, 4116 |
| BstMAI | GTCTC | 6 cut(s) | 434, 574, 1175, 1220, 1245, 1480 |
| BstMCI | CGRYCG | 1 cut(s) | 1112 |
| BstNI | CCWGG | 6 cut(s) | 865, 1122, 1218, 2211, 2700, 3741 |
| BstNSI | RCATGY | 4 cut(s) | 1147, 1597, 2409, 3259 |
| BstSCI | CCNGG | 7 cut(s) | 863, 1120, 1216, 1869, 2209, 2698, 3739 |
| BstSFI | CTRYAG | 4 cut(s) | 1176, 1203, 2676, 3159 |
| BstSLI | GKGCMC | 2 cut(s) | 2340, 2995 |
| BstUI | CGCG | 2 cut(s) | 276, 1968 |
| BstV2I | GAAGAC | 1 cut(s) | 549 |
| BstX2I | RGATCY | 6 cut(s) | 847, 1331, 1351, 1395, 2443, 3778 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 350, 1265, 1808 |
| BstYI | RGATCY | 6 cut(s) | 847, 1331, 1351, 1395, 2443, 3778 |
| BsuI | GTATCC | 3 cut(s) | 1377, 3259, 4155 |
| BtgI | CCRYGG | 7 cut(s) | 990, 2661, 3497, 3553, 3913, 4139, 4184 |
| BtgZI | GCGATG | 1 cut(s) | 2627 |
| BtsI | GCAGTG | 5 cut(s) | 21, 374, 3151, 3539, 4160 |
| BtuMI | TCGCGA | 1 cut(s) | 1968 |
| Cac8I | GCNNGC | 8 cut(s) | 113, 947, 1032, 1595, 1756, 2956, 3013, 3487 |
| CaiI | CAGNNNCTG | 2 cut(s) | 61, 951 |
| CciI | TCATGA | 2 cut(s) | 691, 1795 |
| CfoI | GCGC | 4 cut(s) | 226, 1922, 2274, 4116 |
| Cfr10I | RCCGGY | 3 cut(s) | 1111, 2387, 3816 |
| Cfr13I | GGNCC | 8 cut(s) | 58, 527, 1616, 2336, 2337, 3736, 3743, 4175 |
| CseI | GACGC | 1 cut(s) | 265 |
| Csp6I | GTAC | 8 cut(s) | 628, 764, 1703, 2135, 2727, 3237, 3891, 4135 |
| CspAI | ACCGGT | 1 cut(s) | 1111 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 175, 210 |
| CviQI | GTAC | 8 cut(s) | 628, 764, 1703, 2135, 2727, 3237, 3891, 4135 |
| DraI | TTTAAA | 1 cut(s) | 2164 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3859 |
| EaeI | YGGCCR | 4 cut(s) | 46, 1669, 2805, 2956 |
| Eam1104I | CTCTTC | 6 cut(s) | 482, 873, 1013, 3065, 3075, 3919 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3859 |
| EarI | CTCTTC | 6 cut(s) | 482, 873, 1013, 3065, 3075, 3919 |
| Eco130I | CCWWGG | 9 cut(s) | 990, 1343, 1801, 2661, 3497, 3913, 4050, 4139, 4184 |
| Eco147I | AGGCCT | 1 cut(s) | 2928 |
| Eco24I | GRGCYC | 4 cut(s) | 387, 1277, 1452, 2340 |
| Eco31I | GGTCTC | 1 cut(s) | 1175 |
| Eco32I | GATATC | 2 cut(s) | 1867, 2965 |
| Eco47I | GGWCC | 3 cut(s) | 527, 3736, 3743 |
| Eco47III | AGCGCT | 2 cut(s) | 2273, 4115 |
| Eco57I | CTGAAG | 3 cut(s) | 419, 2921, 3099 |
| Eco72I | CACGTG | 1 cut(s) | 1154 |
| Eco88I | CYCGRG | 1 cut(s) | 1072 |
| EcoO109I | RGGNCCY | 6 cut(s) | 58, 1616, 2337, 3736, 3743, 4175 |
| EcoRI | GAATTC | 1 cut(s) | 32 |
| EcoRII | CCWGG | 6 cut(s) | 863, 1120, 1216, 2209, 2698, 3739 |
| EcoRV | GATATC | 2 cut(s) | 1867, 2965 |
| EcoT14I | CCWWGG | 9 cut(s) | 990, 1343, 1801, 2661, 3497, 3913, 4050, 4139, 4184 |
| EcoT38I | GRGCYC | 4 cut(s) | 387, 1277, 1452, 2340 |
| ErhI | CCWWGG | 9 cut(s) | 990, 1343, 1801, 2661, 3497, 3913, 4050, 4139, 4184 |
| FaqI | GGGAC | 4 cut(s) | 263, 2052, 3266, 3722 |
| FauI | CCCGC | 2 cut(s) | 123, 1500 |
| FbaI | TGATCA | 2 cut(s) | 1555, 2616 |
| FblI | GTMKAC | 2 cut(s) | 468, 2292 |
| FriOI | GRGCYC | 4 cut(s) | 387, 1277, 1452, 2340 |
| FspBI | CTAG | 9 cut(s) | 402, 1410, 1470, 1598, 2460, 3270, 3317, 3837, 4179 |
| GlaI | GCGC | 4 cut(s) | 225, 1921, 2273, 4115 |
| GsaI | CCCAGC | 2 cut(s) | 724, 3736 |
| GsuI | CTGGAG | 3 cut(s) | 2418, 3966, 4207 |
| HaeII | RGCGCY | 3 cut(s) | 227, 2275, 4117 |
| HapII | CCGG | 7 cut(s) | 452, 1112, 1870, 2108, 2388, 3049, 3817 |
| HgaI | GACGC | 1 cut(s) | 265 |
| HhaI | GCGC | 4 cut(s) | 226, 1922, 2274, 4116 |
| Hin6I | GCGC | 4 cut(s) | 224, 1920, 2272, 4114 |
| HinP1I | GCGC | 4 cut(s) | 224, 1920, 2272, 4114 |
| HincII | GTYRAC | 1 cut(s) | 469 |
| HindII | GTYRAC | 1 cut(s) | 469 |
| HindIII | AAGCTT | 4 cut(s) | 410, 2158, 2558, 2768 |
| HinfI | GANTC | 9 cut(s) | 604, 892, 1245, 1456, 1488, 2214, 3599, 3809, 3854 |
| HpaII | CCGG | 7 cut(s) | 452, 1112, 1870, 2108, 2388, 3049, 3817 |
| Hpy166II | GTNNAC | 5 cut(s) | 469, 543, 715, 2293, 4073 |
| Hpy8I | GTNNAC | 5 cut(s) | 469, 543, 715, 2293, 4073 |
| HpyCH4IV | ACGT | 4 cut(s) | 302, 1153, 1824, 2041 |
| HpySE526I | ACGT | 4 cut(s) | 302, 1153, 1824, 2041 |
| HspAI | GCGC | 4 cut(s) | 224, 1920, 2272, 4114 |
| KflI | GGGWCCC | 1 cut(s) | 3736 |
| Ksp22I | TGATCA | 2 cut(s) | 1555, 2616 |
| LguI | GCTCTTC | 3 cut(s) | 1013, 3075, 3919 |
| MaeI | CTAG | 9 cut(s) | 402, 1410, 1470, 1598, 2460, 3270, 3317, 3837, 4179 |
| MaeII | ACGT | 4 cut(s) | 302, 1153, 1824, 2041 |
| MaeIII | GTNAC | 9 cut(s) | 404, 601, 1154, 1775, 2302, 2506, 2752, 3178, 3217 |
| MbiI | CCGCTC | 1 cut(s) | 2173 |
| MfeI | CAATTG | 2 cut(s) | 1103, 1875 |
| MflI | RGATCY | 6 cut(s) | 847, 1331, 1351, 1395, 2443, 3778 |
| MhlI | GDGCHC | 9 cut(s) | 175, 387, 1025, 1277, 1452, 2340, 2995, 3966, 4223 |
| MlsI | TGGCCA | 3 cut(s) | 48, 1671, 2958 |
| MluNI | TGGCCA | 3 cut(s) | 48, 1671, 2958 |
| MlyI | GAGTC | 4 cut(s) | 598, 1482, 3818, 3848 |
| MmeI | TCCRAC | 9 cut(s) | 773, 920, 954, 1291, 2344, 2421, 2452, 3151, 3550 |
| Mox20I | TGGCCA | 3 cut(s) | 48, 1671, 2958 |
| MroXI | GAANNNNTTC | 2 cut(s) | 154, 3288 |
| MscI | TGGCCA | 3 cut(s) | 48, 1671, 2958 |
| MslI | CAYNNNNRTG | 5 cut(s) | 75, 163, 1763, 2222, 3768 |
| Msp20I | TGGCCA | 3 cut(s) | 48, 1671, 2958 |
| MspA1I | CMGCKG | 3 cut(s) | 191, 203, 3280 |
| MspCI | CTTAAG | 2 cut(s) | 422, 2234 |
| MspI | CCGG | 7 cut(s) | 452, 1112, 1870, 2108, 2388, 3049, 3817 |
| MspR9I | CCNGG | 7 cut(s) | 865, 1122, 1218, 1871, 2211, 2700, 3741 |
| MunI | CAATTG | 2 cut(s) | 1103, 1875 |
| Mva1269I | GAATGC | 2 cut(s) | 1791, 4210 |
| MvaI | CCWGG | 6 cut(s) | 865, 1122, 1218, 2211, 2700, 3741 |
| MvnI | CGCG | 2 cut(s) | 276, 1968 |
| NciI | CCSGG | 1 cut(s) | 1871 |
| NcoI | CCATGG | 6 cut(s) | 990, 2661, 3497, 3913, 4139, 4184 |
| NlaIV | GGNNCC | 9 cut(s) | 753, 2338, 2339, 2445, 2697, 3737, 3738, 3780, 3981 |
| NmeAIII | GCCGAG | 1 cut(s) | 3816 |
| NmuCI | GTSAC | 5 cut(s) | 404, 601, 1154, 2506, 3178 |
| NruI | TCGCGA | 1 cut(s) | 1968 |
| NspI | RCATGY | 4 cut(s) | 1147, 1597, 2409, 3259 |
| OliI | CACNNNNGTG | 1 cut(s) | 75 |
| PaeI | GCATGC | 1 cut(s) | 1597 |
| PaeR7I | CTCGAG | 1 cut(s) | 1072 |
| PagI | TCATGA | 2 cut(s) | 691, 1795 |
| PceI | AGGCCT | 1 cut(s) | 2928 |
| PciI | ACATGT | 2 cut(s) | 1143, 3255 |
| PciSI | GCTCTTC | 3 cut(s) | 1013, 3075, 3919 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1747 |
| PctI | GAATGC | 2 cut(s) | 1791, 4210 |
| PdmI | GAANNNNTTC | 2 cut(s) | 154, 3288 |
| PfeI | GAWTC | 5 cut(s) | 892, 1245, 1456, 2214, 3599 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 4155, 4215 |
| PfoI | TCCNGGA | 1 cut(s) | 2698 |
| PinAI | ACCGGT | 1 cut(s) | 1111 |
| PleI | GAGTC | 4 cut(s) | 598, 1482, 3817, 3848 |
| PmaCI | CACGTG | 1 cut(s) | 1154 |
| PmlI | CACGTG | 1 cut(s) | 1154 |
| PpsI | GAGTC | 4 cut(s) | 598, 1482, 3817, 3848 |
| Ppu21I | YACGTR | 1 cut(s) | 1154 |
| PpuMI | RGGWCCY | 2 cut(s) | 3736, 3743 |
| PscI | ACATGT | 2 cut(s) | 1143, 3255 |
| PshBI | ATTAAT | 3 cut(s) | 669, 813, 3027 |
| Psp5II | RGGWCCY | 2 cut(s) | 3736, 3743 |
| Psp6I | CCWGG | 6 cut(s) | 863, 1120, 1216, 2209, 2698, 3739 |
| PspCI | CACGTG | 1 cut(s) | 1154 |
| PspFI | CCCAGC | 2 cut(s) | 720, 3732 |
| PspGI | CCWGG | 6 cut(s) | 863, 1120, 1216, 2209, 2698, 3739 |
| PspN4I | GGNNCC | 9 cut(s) | 753, 2338, 2339, 2445, 2697, 3737, 3738, 3780, 3981 |
| PspOMI | GGGCCC | 1 cut(s) | 2336 |
| PspPI | GGNCC | 8 cut(s) | 58, 527, 1616, 2336, 2337, 3736, 3743, 4175 |
| PspPPI | RGGWCCY | 2 cut(s) | 3736, 3743 |
| PspXI | VCTCGAGB | 1 cut(s) | 1072 |
| PstI | CTGCAG | 3 cut(s) | 1180, 2680, 3163 |
| PstNI | CAGNNNCTG | 2 cut(s) | 61, 951 |
| PsuI | RGATCY | 6 cut(s) | 847, 1331, 1351, 1395, 2443, 3778 |
| PvuII | CAGCTG | 3 cut(s) | 191, 203, 3280 |
| RruI | TCGCGA | 1 cut(s) | 1968 |
| RsaI | GTAC | 8 cut(s) | 629, 765, 1704, 2136, 2728, 3238, 3892, 4136 |
| RsaNI | GTAC | 8 cut(s) | 628, 764, 1703, 2135, 2727, 3237, 3891, 4135 |
| RseI | CAYNNNNRTG | 5 cut(s) | 75, 163, 1763, 2222, 3768 |
| SalI | GTCGAC | 1 cut(s) | 467 |
| SapI | GCTCTTC | 3 cut(s) | 1013, 3075, 3919 |
| Sau96I | GGNCC | 8 cut(s) | 58, 527, 1616, 2336, 2337, 3736, 3743, 4175 |
| ScaI | AGTACT | 3 cut(s) | 2136, 3238, 3892 |
| SchI | GAGTC | 4 cut(s) | 598, 1482, 3818, 3848 |
| ScrFI | CCNGG | 7 cut(s) | 865, 1122, 1218, 1871, 2211, 2700, 3741 |
| SduI | GDGCHC | 9 cut(s) | 175, 387, 1025, 1277, 1452, 2340, 2995, 3966, 4223 |
| SfcI | CTRYAG | 4 cut(s) | 1176, 1203, 2676, 3159 |
| Sfr274I | CTCGAG | 1 cut(s) | 1072 |
| SinI | GGWCC | 3 cut(s) | 527, 3736, 3743 |
| SlaI | CTCGAG | 1 cut(s) | 1072 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 75, 163, 1763, 2222, 3768 |
| SmlI | CTYRAG | 8 cut(s) | 174, 422, 1072, 2126, 2234, 2882, 2996, 3747 |
| SmoI | CTYRAG | 8 cut(s) | 174, 422, 1072, 2126, 2234, 2882, 2996, 3747 |
| SpeI | ACTAGT | 2 cut(s) | 3269, 3836 |
| SphI | GCATGC | 1 cut(s) | 1597 |
| SseBI | AGGCCT | 1 cut(s) | 2928 |
| SsiI | CCGC | 9 cut(s) | 130, 889, 1507, 1682, 2173, 2808, 2818, 3470, 4061 |
| SspMI | CTAG | 9 cut(s) | 402, 1410, 1470, 1598, 2460, 3270, 3317, 3837, 4179 |
| StuI | AGGCCT | 1 cut(s) | 2928 |
| StyD4I | CCNGG | 7 cut(s) | 863, 1120, 1216, 1869, 2209, 2698, 3739 |
| StyI | CCWWGG | 9 cut(s) | 990, 1343, 1801, 2661, 3497, 3913, 4050, 4139, 4184 |
| TaiI | ACGT | 4 cut(s) | 305, 1156, 1827, 2044 |
| TaqI | TCGA | 7 cut(s) | 338, 468, 572, 1073, 2115, 2169, 3433 |
| TatI | WGTACW | 5 cut(s) | 1702, 2134, 2726, 3236, 3890 |
| TauI | GCSGC | 4 cut(s) | 2810, 2821, 3473, 4064 |
| TfiI | GAWTC | 5 cut(s) | 892, 1245, 1456, 2214, 3599 |
| TseFI | GTSAC | 5 cut(s) | 404, 601, 1154, 2506, 3178 |
| Tsp45I | GTSAC | 5 cut(s) | 404, 601, 1154, 2506, 3178 |
| TspDTI | ATGAA | 8 cut(s) | 25, 147, 680, 1784, 2955, 3342, 3402, 3787 |
| TspGWI | ACGGA | 6 cut(s) | 719, 1344, 2883, 3542, 4031, 4207 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 4155, 4215 |
| Vha464I | CTTAAG | 2 cut(s) | 422, 2234 |
| VpaK11BI | GGWCC | 3 cut(s) | 527, 3736, 3743 |
| VspI | ATTAAT | 3 cut(s) | 669, 813, 3027 |
| XapI | RAATTY | 8 cut(s) | 32, 457, 969, 1375, 1439, 2165, 2346, 3287 |
| XbaI | TCTAGA | 1 cut(s) | 3316 |
| XceI | RCATGY | 4 cut(s) | 1147, 1597, 2409, 3259 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1808, 3418 |
| XhoI | CTCGAG | 1 cut(s) | 1072 |
| XmiI | GTMKAC | 2 cut(s) | 468, 2292 |
| XmnI | GAANNNNTTC | 2 cut(s) | 154, 3288 |
| XspI | CTAG | 9 cut(s) | 402, 1410, 1470, 1598, 2460, 3270, 3317, 3837, 4179 |
| ZrmI | AGTACT | 3 cut(s) | 2136, 3238, 3892 |