Rmu_sc0000365.1_g000014

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000365.1
OG0000122
Physical Location & Seq
Forward (+)
53144 .. 54759
1616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000365.1_g000014.1.cds

Sequence Viewer

Length: 852 bp
atgatcggacgccccccttgggctgattgcttcccatctcatcttatctggacggggctggcttttgccttctcttccaattctaggcggttgctgtatcttaatctgaatcaaggaataatgcagaactcctgtcccgaactcggcaacggtgatgccactagatatggcggcggtgttgatcttgggtccttgggggccattgcccccactgagattatgaaatttgttaacttcatggaaagattctttaaaagaaaatcagacatgctaccaccccttgaagatagccgtattcaggtagaaataaacttggcaaatcttccttcagatcctggattacaaatcggaatttcagattatgatccgaatattcgagaccaagttcgaagagaatatctgcaaagggcaaatattggagatcaagcaggtggtgatgtctttactagtgatggttttcgaaattggaaaaagaaagaaagattatatgatcatgtcggagaccacagcagtgctcataatcaagctttgaagaagtgtgaagccttgatgaatgaaaatcaacacattcgaaatattatccacaagaatgctaagcaatccagaacaaattatcgaattcggctcactgcatcagttgattgcattcggtttcttctaagacaaggccttgcatttcgaggccatgatgagtcggacaattcaagcaatcagggtaactttcttcaactcttacaatttcttgctgatcatgatcaagaagttagagctgttgctttgaaaaatgctcctgaaaacctcaaaatgacatcacctatgattcagaaagacagtaaatgctgctgcagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

283

Amino Acids

32.0

Weight (kDa)

8.44

Isoelectric Point (pI)

44.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 419
AciI CCGC 3 cut(s) 88, 171, 174
AclWI GGATC 2 cut(s) 326, 359
AcsI RAATTY 3 cut(s) 224, 351, 618
AcuI CTGAAG 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 10
AfiI CCNNNNNNNGG 4 cut(s) 19, 84, 143, 298
AgsI TTSAA 5 cut(s) 284, 532, 705, 728, 781
AhlI ACTAGT 1 cut(s) 446
AjnI CCWGG 1 cut(s) 334
AleI CACNNNNGTG 1 cut(s) 510
AluBI AGCT 2 cut(s) 527, 770
AluI AGCT 2 cut(s) 527, 770
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 2 cut(s) 372, 495
AlwI GGATC 2 cut(s) 326, 359
AlwNI CAGNNNCTG 1 cut(s) 335
AoxI GGCC 3 cut(s) 198, 667, 682
ApeKI GCWGC 2 cut(s) 840, 843
ApoI RAATTY 3 cut(s) 224, 351, 618
AspS9I GGNCC 2 cut(s) 189, 198
AsuHPI GGTGA 3 cut(s) 164, 446, 804
AsuII TTCGAA 3 cut(s) 388, 460, 571
AvaII GGWCC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 2 cut(s) 827, 830
BccI CCATC 2 cut(s) 43, 446
BceAI ACGGC 1 cut(s) 276
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 3 cut(s) 490, 748, 754
BcoDI GTCTC 2 cut(s) 372, 495
BcuI ACTAGT 1 cut(s) 446
BfaI CTAG 3 cut(s) 84, 162, 447
BfmI CTRYAG 1 cut(s) 844
BfuAI ACCTGC 1 cut(s) 419
BisI GCNGC 3 cut(s) 172, 841, 844
BlpI GCTNAGC 1 cut(s) 594
BlsI GCNGC 3 cut(s) 173, 842, 845
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 2 cut(s) 189, 198
BmiI GGNNCC 2 cut(s) 190, 199
BmrFI CCNGG 1 cut(s) 336
BmsI GCATC 2 cut(s) 145, 641
Bpu1102I GCTNAGC 1 cut(s) 594
Bpu14I TTCGAA 3 cut(s) 388, 460, 571
BsaBI GATNNNNATC 2 cut(s) 363, 753
BsaHI GRCGYC 1 cut(s) 10
BsaI GGTCTC 2 cut(s) 372, 495
BsaJI CCNNGG 2 cut(s) 17, 192
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 84, 143, 298
Bse3DI GCAATG 1 cut(s) 201
Bse8I GATNNNNATC 2 cut(s) 363, 753
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 2 cut(s) 17, 192
BseJI GATNNNNATC 2 cut(s) 363, 753
BseLI CCNNNNNNNGG 4 cut(s) 19, 84, 143, 298
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 204
BseXI GCAGC 2 cut(s) 827, 830
BshFI GGCC 3 cut(s) 200, 669, 684
BsiHKAI GWGCWC 1 cut(s) 517
BslFI GGGAC 1 cut(s) 120
BslI CCNNNNNNNGG 4 cut(s) 19, 84, 143, 298
BsmAI GTCTC 2 cut(s) 372, 495
BsmFI GGGAC 1 cut(s) 120
BsmI GAATGC 2 cut(s) 595, 645
BsnI GGCC 3 cut(s) 200, 669, 684
Bso31I GGTCTC 2 cut(s) 372, 495
Bsp119I TTCGAA 3 cut(s) 388, 460, 571
Bsp1286I GDGCHC 1 cut(s) 517
Bsp143I GATC 8 cut(s) 3, 181, 331, 364, 421, 490, 748, 754
Bsp1720I GCTNAGC 1 cut(s) 594
BspACI CCGC 3 cut(s) 88, 171, 174
BspANI GGCC 3 cut(s) 200, 669, 684
BspCNI CTCAG 1 cut(s) 205
BspHI TCATGA 1 cut(s) 751
BspLI GGNNCC 2 cut(s) 190, 199
BspMAI CTGCAG 1 cut(s) 848
BspMI ACCTGC 1 cut(s) 419
BspPI GGATC 2 cut(s) 326, 359
BspT104I TTCGAA 3 cut(s) 388, 460, 571
BspTNI GGTCTC 2 cut(s) 372, 495
BsrDI GCAATG 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 17, 192
BssMI GATC 8 cut(s) 3, 181, 331, 364, 421, 490, 748, 754
BssNI GRCGYC 1 cut(s) 10
BssT1I CCWWGG 2 cut(s) 17, 192
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 152, 833
Bst6I CTCTTC 2 cut(s) 79, 385
BstACI GRCGYC 1 cut(s) 10
BstBI TTCGAA 3 cut(s) 388, 460, 571
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 3 cut(s) 213, 594, 659
BstKTI GATC 8 cut(s) 6, 184, 334, 367, 424, 493, 751, 757
BstMAI GTCTC 2 cut(s) 372, 495
BstMBI GATC 8 cut(s) 3, 181, 331, 364, 421, 490, 748, 754
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 844
BstV1I GCAGC 2 cut(s) 827, 830
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BsuRI GGCC 3 cut(s) 200, 669, 684
BtsI GCAGTG 2 cut(s) 517, 627
BtsIMutI CAGTG 3 cut(s) 210, 517, 627
BveI ACCTGC 1 cut(s) 419
Cac8I GCNNGC 1 cut(s) 60
CaiI CAGNNNCTG 1 cut(s) 335
CciI TCATGA 1 cut(s) 751
Cfr13I GGNCC 2 cut(s) 189, 198
CseI GACGC 1 cut(s) 18
CviAII CATG 5 cut(s) 238, 268, 494, 686, 752
DdeI CTNAG 3 cut(s) 213, 594, 659
DpnI GATC 8 cut(s) 5, 183, 333, 366, 423, 492, 750, 756
DpnII GATC 8 cut(s) 3, 181, 331, 364, 421, 490, 748, 754
DraI TTTAAA 1 cut(s) 253
Eam1104I CTCTTC 2 cut(s) 79, 385
EarI CTCTTC 2 cut(s) 79, 385
Eco130I CCWWGG 2 cut(s) 17, 192
Eco147I AGGCCT 1 cut(s) 669
Eco31I GGTCTC 2 cut(s) 372, 495
Eco47I GGWCC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 312
EcoO109I RGGNCCY 1 cut(s) 189
EcoRI GAATTC 1 cut(s) 618
EcoRII CCWGG 1 cut(s) 334
EcoT14I CCWWGG 2 cut(s) 17, 192
ErhI CCWWGG 2 cut(s) 17, 192
FaeI CATG 5 cut(s) 241, 271, 497, 689, 755
FaqI GGGAC 1 cut(s) 120
FatI CATG 5 cut(s) 237, 267, 493, 685, 751
FbaI TGATCA 3 cut(s) 490, 748, 754
Fnu4HI GCNGC 3 cut(s) 172, 841, 844
Fsp4HI GCNGC 3 cut(s) 172, 841, 844
FspBI CTAG 3 cut(s) 84, 162, 447
GluI GCNGC 3 cut(s) 172, 841, 844
HaeIII GGCC 3 cut(s) 200, 669, 684
HgaI GACGC 1 cut(s) 18
Hin1I GRCGYC 1 cut(s) 10
Hin1II CATG 5 cut(s) 241, 271, 497, 689, 755
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HindIII AAGCTT 1 cut(s) 525
HinfI GANTC 4 cut(s) 109, 246, 692, 820
HpaI GTTAAC 1 cut(s) 232
HphI GGTGA 3 cut(s) 164, 446, 804
Hpy166II GTNNAC 1 cut(s) 232
Hpy188III TCNNGA 7 cut(s) 49, 137, 377, 603, 752, 758, 791
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 2 cut(s) 79, 336
HpyCH4III ACNGT 2 cut(s) 152, 833
HpyCH4V TGCA 6 cut(s) 124, 403, 632, 645, 674, 846
HpyF3I CTNAG 3 cut(s) 213, 594, 659
Hsp92I GRCGYC 1 cut(s) 10
Hsp92II CATG 5 cut(s) 241, 271, 497, 689, 755
Ksp22I TGATCA 3 cut(s) 490, 748, 754
KspAI GTTAAC 1 cut(s) 232
Kzo9I GATC 8 cut(s) 3, 181, 331, 364, 421, 490, 748, 754
LmnI GCTCC 1 cut(s) 793
Lsp1109I GCAGC 2 cut(s) 827, 830
LweI GCATC 2 cut(s) 145, 641
MaeI CTAG 3 cut(s) 84, 162, 447
MaeIII GTNAC 1 cut(s) 716
MalI GATC 8 cut(s) 5, 183, 333, 366, 423, 492, 750, 756
MboI GATC 8 cut(s) 3, 181, 331, 364, 421, 490, 748, 754
MboII GAAGA 7 cut(s) 66, 296, 314, 402, 544, 647, 716
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 517
MluCI AATT 8 cut(s) 79, 224, 351, 463, 610, 618, 700, 737
MlyI GAGTC 1 cut(s) 701
MmeI TCCRAC 2 cut(s) 478, 675
MnlI CCTC 2 cut(s) 674, 809
MseI TTAA 3 cut(s) 102, 231, 252
MslI CAYNNNNRTG 2 cut(s) 510, 588
MspR9I CCNGG 1 cut(s) 336
Mva1269I GAATGC 2 cut(s) 595, 645
MvaI CCWGG 1 cut(s) 336
NdeII GATC 8 cut(s) 3, 181, 331, 364, 421, 490, 748, 754
NlaIII CATG 5 cut(s) 241, 271, 497, 689, 755
NlaIV GGNNCC 2 cut(s) 190, 199
NmeAIII GCCGAG 1 cut(s) 123
NspI RCATGY 1 cut(s) 271
NspV TTCGAA 3 cut(s) 388, 460, 571
OliI CACNNNNGTG 1 cut(s) 510
PagI TCATGA 1 cut(s) 751
PaqCI CACCTGC 1 cut(s) 419
PceI AGGCCT 1 cut(s) 669
PctI GAATGC 2 cut(s) 595, 645
PfeI GAWTC 3 cut(s) 109, 246, 820
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 3 cut(s) 173, 842, 845
PleI GAGTC 1 cut(s) 700
PpsI GAGTC 1 cut(s) 700
PpuMI RGGWCCY 1 cut(s) 189
Psp5II RGGWCCY 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 190, 199
PspPI GGNCC 2 cut(s) 189, 198
PspPPI RGGWCCY 1 cut(s) 189
PstI CTGCAG 1 cut(s) 848
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 1 cut(s) 331
RseI CAYNNNNRTG 2 cut(s) 510, 588
SaqAI TTAA 3 cut(s) 102, 231, 252
SatI GCNGC 3 cut(s) 172, 841, 844
Sau3AI GATC 8 cut(s) 3, 181, 331, 364, 421, 490, 748, 754
Sau96I GGNCC 2 cut(s) 189, 198
SchI GAGTC 1 cut(s) 701
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 1 cut(s) 517
SetI ASST 6 cut(s) 303, 433, 529, 772, 801, 817
SfaNI GCATC 2 cut(s) 145, 641
SfcI CTRYAG 1 cut(s) 844
SfuI TTCGAA 3 cut(s) 388, 460, 571
SinI GGWCC 1 cut(s) 189
SmiMI CAYNNNNRTG 2 cut(s) 510, 588
SpeI ACTAGT 1 cut(s) 446
Sse9I AATT 8 cut(s) 79, 224, 351, 463, 610, 618, 700, 737
SseBI AGGCCT 1 cut(s) 669
SsiI CCGC 3 cut(s) 88, 171, 174
SspI AATATT 3 cut(s) 373, 415, 577
SspMI CTAG 3 cut(s) 84, 162, 447
StuI AGGCCT 1 cut(s) 669
StyD4I CCNGG 1 cut(s) 334
StyI CCWWGG 2 cut(s) 17, 192
TaaI ACNGT 2 cut(s) 152, 833
TaqI TCGA 6 cut(s) 376, 388, 460, 571, 616, 679
TasI AATT 8 cut(s) 79, 224, 351, 463, 610, 618, 700, 737
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 3 cut(s) 109, 246, 820
Tru1I TTAA 3 cut(s) 102, 231, 252
Tru9I TTAA 3 cut(s) 102, 231, 252
TscAI CASTG 3 cut(s) 217, 517, 634
TseI GCWGC 2 cut(s) 840, 843
TspDTI ATGAA 4 cut(s) 226, 236, 566, 570
TspRI CASTG 3 cut(s) 217, 517, 634
VpaK11BI GGWCC 1 cut(s) 189
XapI RAATTY 3 cut(s) 224, 351, 618
XceI RCATGY 1 cut(s) 271
XspI CTAG 3 cut(s) 84, 162, 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.