Rmu_sc0040149.1_g000001

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0040149.1
OG0000122
Physical Location & Seq
Reverse (-)
2 .. 677
676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0040149.1_g000001.1.cds

Sequence Viewer

Length: 676 bp
atgtcgattttgtttgctaccactggttgtagtgacagatcaccggaacccaagaggtacaaaaatcttttgccatggtttacaagtggtgctccatcaagtgatagtgtcgatgggattagaagtgggagtgggagtgggagtagaaatgtgactgagaattctgttaatgatgtccctttaaacccttctccatctattccactagaagagtgtcataatgaaagaattgagagagaagaaagttttgatgttagttctcttcaacgtgatccaggaataaggcgtccaatatgtaagtaccctttgaatgagcgtgacaatattcgaagagcttatgtggtcttaggaccgtatcaacctcacttaagtttttacccattatcatttgacggaggtcaaggtcgaaaatttaatcctaagtggttcaaagaatggtcgtggcttgagtattccgcagagttggacaaagagttttgcttcccttgtttcttgtttgatagttacccatcccatcatccagcatttactgagcatgggtttcaaggttggaagaatgttatgtctaaaaaatctggcattgtctatcacataggaggcataaattccccacataatatttccatgcacaagtgggagtcactaagaaacccatctaagcatattgaaagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

225

Amino Acids

25.77

Weight (kDa)

7.7

Isoelectric Point (pI)

76.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 456
AclWI GGATC 1 cut(s) 266
AcsI RAATTY 3 cut(s) 160, 410, 604
AcyI GRCGYC 1 cut(s) 286
AfaI GTAC 2 cut(s) 59, 302
AflII CTTAAG 1 cut(s) 367
AgsI TTSAA 5 cut(s) 266, 310, 430, 545, 668
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 1 cut(s) 335
AluI AGCT 1 cut(s) 335
Alw21I GWGCWC 1 cut(s) 94
AlwI GGATC 1 cut(s) 266
ApoI RAATTY 3 cut(s) 160, 410, 604
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 33
AsuII TTCGAA 1 cut(s) 328
AvaII GGWCC 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 94
BccI CCATC 6 cut(s) 103, 107, 202, 517, 522, 661
BciT130I CCWGG 1 cut(s) 276
BfaI CTAG 1 cut(s) 206
BfrI CTTAAG 1 cut(s) 367
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 48
BmrFI CCNGG 1 cut(s) 276
BoxI GACNNNNGTC 1 cut(s) 396
Bpu14I TTCGAA 1 cut(s) 328
BpuEI CTTGAG 1 cut(s) 467
BsaHI GRCGYC 1 cut(s) 286
BsaJI CCNNGG 1 cut(s) 74
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 4 cut(s) 121, 127, 151, 157
Bse1I ACTGG 1 cut(s) 28
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 2 cut(s) 509, 517
BseMII CTCAG 2 cut(s) 147, 522
BseNI ACTGG 1 cut(s) 28
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 161
Bsp119I TTCGAA 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 2 cut(s) 38, 271
Bsp19I CCATGG 1 cut(s) 74
BspACI CCGC 1 cut(s) 456
BspCNI CTCAG 2 cut(s) 148, 523
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 1 cut(s) 266
BspQI GCTCTTC 1 cut(s) 325
BspT104I TTCGAA 1 cut(s) 328
BspTI CTTAAG 1 cut(s) 367
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 2 cut(s) 38, 271
BssNI GRCGYC 1 cut(s) 286
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 354
Bst6I CTCTTC 3 cut(s) 204, 267, 325
BstACI GRCGYC 1 cut(s) 286
BstAFI CTTAAG 1 cut(s) 367
BstBI TTCGAA 1 cut(s) 328
BstDEI CTNAG 6 cut(s) 156, 346, 420, 531, 644, 657
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 2 cut(s) 509, 517
BstKTI GATC 2 cut(s) 41, 274
BstMBI GATC 2 cut(s) 38, 271
BstNI CCWGG 1 cut(s) 276
BstPAI GACNNNNGTC 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 274
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 2 cut(s) 509, 517
BtsIMutI CAGTG 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 350
CseI GACGC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 58, 301
CviAII CATG 3 cut(s) 75, 536, 625
CviJI RGCY 2 cut(s) 335, 445
CviKI_1 RGCY 2 cut(s) 335, 445
CviQI GTAC 2 cut(s) 58, 301
DdeI CTNAG 6 cut(s) 156, 346, 420, 531, 644, 657
DpnI GATC 2 cut(s) 40, 273
DpnII GATC 2 cut(s) 38, 271
DraI TTTAAA 1 cut(s) 183
Eam1104I CTCTTC 3 cut(s) 204, 267, 325
EarI CTCTTC 3 cut(s) 204, 267, 325
Eco130I CCWWGG 1 cut(s) 74
Eco47I GGWCC 1 cut(s) 350
EcoRI GAATTC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
FaeI CATG 3 cut(s) 78, 539, 628
FaqI GGGAC 1 cut(s) 161
FatI CATG 3 cut(s) 74, 535, 624
FokI GGATG 2 cut(s) 496, 504
FspBI CTAG 1 cut(s) 206
HapII CCGG 1 cut(s) 44
HgaI GACGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 286
Hin1II CATG 3 cut(s) 78, 539, 628
HinfI GANTC 1 cut(s) 638
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 33
Hpy166II GTNNAC 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 1 cut(s) 354
HpyCH4IV ACGT 1 cut(s) 268
HpyCH4V TGCA 1 cut(s) 628
HpyF3I CTNAG 6 cut(s) 156, 346, 420, 531, 644, 657
HpySE526I ACGT 1 cut(s) 268
Hsp92I GRCGYC 1 cut(s) 286
Hsp92II CATG 3 cut(s) 78, 539, 628
Kzo9I GATC 2 cut(s) 38, 271
LguI GCTCTTC 1 cut(s) 325
LmnI GCTCC 1 cut(s) 97
LpnPI CCDG 6 cut(s) 9, 57, 261, 288, 534, 561
MaeI CTAG 1 cut(s) 206
MaeII ACGT 1 cut(s) 268
MaeIII GTNAC 5 cut(s) 32, 151, 317, 503, 639
MalI GATC 2 cut(s) 40, 273
MboI GATC 2 cut(s) 38, 271
MboII GAAGA 5 cut(s) 221, 251, 254, 342, 565
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 4 cut(s) 160, 228, 410, 604
MlyI GAGTC 1 cut(s) 647
MmeI TCCRAC 2 cut(s) 444, 530
MnlI CCTC 4 cut(s) 48, 372, 389, 590
MseI TTAA 4 cut(s) 168, 182, 368, 414
MspCI CTTAAG 1 cut(s) 367
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
NcoI CCATGG 1 cut(s) 74
NdeII GATC 2 cut(s) 38, 271
NlaIII CATG 3 cut(s) 78, 539, 628
NlaIV GGNNCC 1 cut(s) 48
NmuCI GTSAC 4 cut(s) 32, 151, 317, 639
NspV TTCGAA 1 cut(s) 328
PciSI GCTCTTC 1 cut(s) 325
PfoI TCCNGGA 1 cut(s) 274
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
PshAI GACNNNNGTC 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 48
PspPI GGNCC 1 cut(s) 350
RsaI GTAC 2 cut(s) 59, 302
RsaNI GTAC 2 cut(s) 58, 301
SapI GCTCTTC 1 cut(s) 325
SaqAI TTAA 4 cut(s) 168, 182, 368, 414
Sau3AI GATC 2 cut(s) 38, 271
Sau96I GGNCC 1 cut(s) 350
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 1 cut(s) 94
SetI ASST 7 cut(s) 59, 271, 337, 364, 400, 406, 550
SfuI TTCGAA 1 cut(s) 328
SinI GGWCC 1 cut(s) 350
SmlI CTYRAG 2 cut(s) 367, 446
SmoI CTYRAG 2 cut(s) 367, 446
Sse9I AATT 4 cut(s) 160, 228, 410, 604
SsiI CCGC 1 cut(s) 456
SspI AATATT 2 cut(s) 325, 619
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 274
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 354
TaiI ACGT 1 cut(s) 271
TaqI TCGA 4 cut(s) 5, 111, 328, 406
TasI AATT 4 cut(s) 160, 228, 410, 604
Tru1I TTAA 4 cut(s) 168, 182, 368, 414
Tru9I TTAA 4 cut(s) 168, 182, 368, 414
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 4 cut(s) 32, 151, 317, 639
Tsp45I GTSAC 4 cut(s) 32, 151, 317, 639
TspDTI ATGAA 1 cut(s) 237
TspGWI ACGGA 1 cut(s) 408
TspRI CASTG 1 cut(s) 28
Vha464I CTTAAG 1 cut(s) 367
VpaK11BI GGWCC 1 cut(s) 350
XapI RAATTY 3 cut(s) 160, 410, 604
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.