pycom13g20080

Zinc finger MYM-type protein 1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
16077841 .. 16079809
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g20080.1

Sequence Viewer

Length: 918 bp
ATGACTTTCCTACTTGGTTGGAGTATAGCATATCCAAAAATGATGTTTTTTTGTCGAAGCTGTTATCTCTTCAAGCTAGAGATTTTGAAGCAAGCAGATCATAATGAGGGTATTAAAGATGTGGTGTTTAAAACTGCTCCTGAAAATCTCAAGTTAACATCACCTGAAATTCAAAATGATCTTGTGTATGCAGCAGCATGTGAAACCACCAATGTTATCATGTTTGATATTGTCAAGGAGCAAATGGCAGTTGTACTTCGCTATGTGAATACCAACGGACAAGTAGTTGAAAGATTTGTGGGCATAAAGCATGTTCTTAATACCACTGCTTTTTCACTTAACGAGGCAATTGATCAGTTCTTCTCTATAAATGGATTAAGCATATCTAGATTGCGTGGACAAGGTTATGATGGGGCTATCAATATGCAAGGGAGGTCACAGCGTAGAGTTGAAAATTTGACAAACCTTCATCACTACCATGTTGATCTCTTTATTGATGTTATTGACAAGCAACTTCAAGAGTTGAACAGTCATTTTAATGAGACAAGTACAGAGTTGCTTCTTTGTGTAGCATGCTTAAGCCCAGATGACTCATTCTCAGCCTTTGACATTGAAAAGTTAGTTCGACTTGCTCAATTTTACGCAAAAGATTTTTTTGATATGGAGCTCACACTTCTTGAAGATGAACTGAAGAATTATATTTTTGATATGCGTTTGCATAATGAATTTTCTGCATTGAAAGGAATTAATAGCCTTGCACCAAAGTTGGTGGAGAAAAAGAGGGATAGACAGTATCCCTTGGTGTACTTGCTAGTGAAATTAGCATTGATTTTACCTGTTGCGACTGCTTCAGTTGAAAGAGCTTTTTCGGTGATGAAAATTGTGAAGAATCTACATCATAATAGGATGGGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

306

Amino Acids

35.05

Weight (kDa)

6.16

Isoelectric Point (pI)

36.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 27 - 145 1.8e-26 Domain of unknown function (DUF4371)
Dimer_Tnp_hAT PF05699 259 - 303 6.6e-06 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 168, 454, 725
AcuI CTGAAG 2 cut(s) 710, 834
AfaI GTAC 3 cut(s) 255, 550, 806
AflII CTTAAG 1 cut(s) 577
AluBI AGCT 4 cut(s) 60, 76, 667, 863
AluI AGCT 4 cut(s) 60, 76, 667, 863
Alw21I GWGCWC 1 cut(s) 669
Alw26I GTCTC 1 cut(s) 536
ApeKI GCWGC 2 cut(s) 191, 194
ApoI RAATTY 3 cut(s) 168, 454, 725
AseI ATTAAT 1 cut(s) 747
AsuHPI GGTGA 2 cut(s) 153, 883
BanII GRGCYC 1 cut(s) 669
Bbv12I GWGCWC 1 cut(s) 669
BbvI GCAGC 2 cut(s) 203, 206
BccI CCATC 2 cut(s) 404, 901
BciVI GTATCC 1 cut(s) 804
BclI TGATCA 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 536
BfaI CTAG 3 cut(s) 77, 387, 812
BfrI CTTAAG 1 cut(s) 577
BfuI GTATCC 1 cut(s) 804
BisI GCNGC 2 cut(s) 192, 195
BlsI GCNGC 2 cut(s) 193, 196
BpuEI CTTGAG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 798
BseDI CCNNGG 1 cut(s) 798
BseGI GGATG 1 cut(s) 912
BseMII CTCAG 1 cut(s) 612
BseXI GCAGC 2 cut(s) 203, 206
BsiHKAI GWGCWC 1 cut(s) 669
BsmAI GTCTC 1 cut(s) 536
Bsp1286I GDGCHC 1 cut(s) 669
Bsp143I GATC 4 cut(s) 97, 178, 352, 484
BspCNI CTCAG 1 cut(s) 611
BspTI CTTAAG 1 cut(s) 577
BssECI CCNNGG 1 cut(s) 798
BssMI GATC 4 cut(s) 97, 178, 352, 484
BssT1I CCWWGG 1 cut(s) 798
Bst4CI ACNGT 2 cut(s) 530, 792
Bst6I CTCTTC 1 cut(s) 74
BstAFI CTTAAG 1 cut(s) 577
BstC8I GCNNGC 2 cut(s) 93, 574
BstDEI CTNAG 1 cut(s) 598
BstF5I GGATG 1 cut(s) 912
BstKTI GATC 4 cut(s) 100, 181, 355, 487
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 4 cut(s) 97, 178, 352, 484
BstNSI RCATGY 3 cut(s) 201, 314, 576
BstV1I GCAGC 2 cut(s) 203, 206
BsuI GTATCC 1 cut(s) 804
BtsCI GGATG 1 cut(s) 912
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 93, 574
Csp6I GTAC 3 cut(s) 254, 549, 805
CspCI CAANNNNNGTGG 2 cut(s) 750, 785
CviAII CATG 5 cut(s) 198, 220, 311, 479, 573
CviJI RGCY 8 cut(s) 60, 76, 416, 582, 602, 667, 753, 863
CviKI_1 RGCY 8 cut(s) 60, 76, 416, 582, 602, 667, 753, 863
CviQI GTAC 3 cut(s) 254, 549, 805
DdeI CTNAG 1 cut(s) 598
DpnI GATC 4 cut(s) 99, 180, 354, 486
DpnII GATC 4 cut(s) 97, 178, 352, 484
DraI TTTAAA 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
Ecl136II GAGCTC 1 cut(s) 667
Eco130I CCWWGG 1 cut(s) 798
Eco24I GRGCYC 1 cut(s) 669
Eco53kI GAGCTC 1 cut(s) 667
Eco57I CTGAAG 2 cut(s) 710, 834
EcoICRI GAGCTC 1 cut(s) 667
EcoT14I CCWWGG 1 cut(s) 798
EcoT38I GRGCYC 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 798
FaeI CATG 5 cut(s) 201, 223, 314, 482, 576
FatI CATG 5 cut(s) 197, 219, 310, 478, 572
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 2 cut(s) 192, 195
FriOI GRGCYC 1 cut(s) 669
Fsp4HI GCNGC 2 cut(s) 192, 195
FspBI CTAG 3 cut(s) 77, 387, 812
GluI GCNGC 2 cut(s) 192, 195
Hin1II CATG 5 cut(s) 201, 223, 314, 482, 576
HincII GTYRAC 1 cut(s) 156
HindII GTYRAC 1 cut(s) 156
HinfI GANTC 2 cut(s) 590, 889
HpaI GTTAAC 1 cut(s) 156
HphI GGTGA 2 cut(s) 153, 883
Hpy166II GTNNAC 3 cut(s) 156, 398, 805
Hpy188III TCNNGA 4 cut(s) 140, 387, 518, 677
Hpy8I GTNNAC 3 cut(s) 156, 398, 805
HpyAV CCTTC 1 cut(s) 476
HpyCH4III ACNGT 2 cut(s) 530, 792
HpyCH4V TGCA 5 cut(s) 191, 427, 718, 734, 758
HpyF3I CTNAG 1 cut(s) 598
Hsp92II CATG 5 cut(s) 201, 223, 314, 482, 576
Ksp22I TGATCA 1 cut(s) 352
KspAI GTTAAC 1 cut(s) 156
Kzo9I GATC 4 cut(s) 97, 178, 352, 484
LmnI GCTCC 3 cut(s) 142, 238, 664
LpnPI CCDG 4 cut(s) 153, 177, 597, 849
Lsp1109I GCAGC 2 cut(s) 203, 206
MaeI CTAG 3 cut(s) 77, 387, 812
MaeIII GTNAC 1 cut(s) 435
MalI GATC 4 cut(s) 99, 180, 354, 486
MboI GATC 4 cut(s) 97, 178, 352, 484
MboII GAAGA 5 cut(s) 61, 352, 692, 703, 898
MfeI CAATTG 1 cut(s) 348
MhlI GDGCHC 1 cut(s) 669
MluCI AATT 9 cut(s) 168, 348, 454, 635, 694, 725, 744, 818, 879
MlyI GAGTC 1 cut(s) 584
MnlI CCTC 4 cut(s) 100, 337, 426, 774
MslI CAYNNNNRTG 2 cut(s) 477, 537
MspCI CTTAAG 1 cut(s) 577
MunI CAATTG 1 cut(s) 348
NdeII GATC 4 cut(s) 97, 178, 352, 484
NlaIII CATG 5 cut(s) 201, 223, 314, 482, 576
NmuCI GTSAC 1 cut(s) 435
NspI RCATGY 3 cut(s) 201, 314, 576
PaeI GCATGC 1 cut(s) 576
PfeI GAWTC 1 cut(s) 889
PkrI GCNGC 2 cut(s) 193, 196
PleI GAGTC 1 cut(s) 584
PpsI GAGTC 1 cut(s) 584
PshBI ATTAAT 1 cut(s) 747
Psp124BI GAGCTC 1 cut(s) 669
RsaI GTAC 3 cut(s) 255, 550, 806
RsaNI GTAC 3 cut(s) 254, 549, 805
RseI CAYNNNNRTG 2 cut(s) 477, 537
SacI GAGCTC 1 cut(s) 669
SatI GCNGC 2 cut(s) 192, 195
Sau3AI GATC 4 cut(s) 97, 178, 352, 484
SchI GAGTC 1 cut(s) 584
SduI GDGCHC 1 cut(s) 669
SetI ASST 9 cut(s) 62, 78, 166, 406, 437, 468, 669, 838, 865
SmiMI CAYNNNNRTG 2 cut(s) 477, 537
SmlI CTYRAG 2 cut(s) 149, 577
SmoI CTYRAG 2 cut(s) 149, 577
SphI GCATGC 1 cut(s) 576
Sse9I AATT 9 cut(s) 168, 348, 454, 635, 694, 725, 744, 818, 879
SspMI CTAG 3 cut(s) 77, 387, 812
SstI GAGCTC 1 cut(s) 669
StyI CCWWGG 1 cut(s) 798
TaaI ACNGT 2 cut(s) 530, 792
TaqI TCGA 2 cut(s) 55, 625
TasI AATT 9 cut(s) 168, 348, 454, 635, 694, 725, 744, 818, 879
TatI WGTACW 3 cut(s) 253, 548, 804
TfiI GAWTC 1 cut(s) 889
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 435
TseI GCWGC 2 cut(s) 191, 194
Tsp45I GTSAC 1 cut(s) 435
TspDTI ATGAA 4 cut(s) 458, 699, 738, 890
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 331
Vha464I CTTAAG 1 cut(s) 577
VspI ATTAAT 1 cut(s) 747
XapI RAATTY 3 cut(s) 168, 454, 725
XbaI TCTAGA 1 cut(s) 386
XceI RCATGY 3 cut(s) 201, 314, 576
XspI CTAG 3 cut(s) 77, 387, 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.