Rw6G013460

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000122
Physical Location & Seq
Forward (+)
24882594 .. 24883514
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G013460.1

Sequence Viewer

Length: 867 bp
ATGATTGAGCAAGGACCCGTGGAATTGCAAGGAGAAGCTGTGGCTATTCTTAAAGCTATGATGTCTTTTGATTTTGTGTTCTGCTTGCTTCTAATGCACAAATTGATGAAAATTACTGAATTTGTTGGACATACAAAATCATTTCTTCAAGAGATGAGAGAAGAAGGTTGGGATGACTTGGTAAGAAATGTTGAAACTTTTTGTGAAAAGCATGATATTGATGTGCCTGATATGAATGCTCGTTATAAGGATGGTACAGGTCGTCGTTGCCAACAAAGAGATTTCATTACAATTGAGCATTATTACCATATAGATGTCTTCAATGCTTTAATTGATTTTCAGTTGAGTGAGTTGAATAGAAGATTCTCAAACCAAACATCTGAACTTCTTATACTTAGCTCAACCTTGGATCCTCGTGATAACTTCATAAATTTTAAAACTGAAGATGCATGCAATCTTGCAAAGAAGTTTTATCCTGAAGATTTTGTTGATAGTGAAATGTTTGCTCTAGAATTAGAGTGTGCATTTAATGAGAAAGATATGTGTAGTGATCCAAAGTTCCAGAATTTGGAATCCATTTCTGATTTGTGCAGAATGTTGGTTCAAACAAGGAAGTCAGAATTTTTCCCTATGCTTTATAGATTGATTTGTCTAGTTTTGACTATTCCTGTTTCTACAGCGACCACTGAAAGAGCATTTTCAGCTATGAACATCATTAAGAATAGAGTTAGAAACAAGATGGAAGATGAGTTTCTCGGTGATTGTATGGTCCTTCATGTTGAGAAGGAATATGCTGAATCTATTGACAATGAATCGGTGATCAAAGAGTTTGAAGATTGTGGAACTCGGAGAGTTAGATTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

288

Amino Acids

33.77

Weight (kDa)

4.84

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 200 - 258 2.1e-10 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 246
AccB7I CCANNNNNTGG 1 cut(s) 568
AclWI GGATC 3 cut(s) 404, 417, 545
AcsI RAATTY 4 cut(s) 119, 430, 565, 620
AcuI CTGAAG 2 cut(s) 462, 498
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 568
AgsI TTSAA 6 cut(s) 149, 194, 322, 355, 605, 833
AluBI AGCT 4 cut(s) 38, 56, 399, 704
AluI AGCT 4 cut(s) 38, 56, 399, 704
AlwI GGATC 3 cut(s) 404, 417, 545
ApoI RAATTY 4 cut(s) 119, 430, 565, 620
AspS9I GGNCC 2 cut(s) 14, 769
AsuHPI GGTGA 2 cut(s) 770, 829
AvaII GGWCC 2 cut(s) 14, 769
BamHI GGATCC 1 cut(s) 409
BauI CACGAG 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 310
BccI CCATC 2 cut(s) 245, 733
BclI TGATCA 1 cut(s) 819
BfaI CTAG 2 cut(s) 509, 653
BfmI CTRYAG 1 cut(s) 675
Bme18I GGWCC 2 cut(s) 14, 769
BmgT120I GGNCC 2 cut(s) 14, 769
BmiI GGNNCC 2 cut(s) 16, 411
BmsI GCATC 1 cut(s) 436
BpiI GAAGAC 1 cut(s) 310
BsaJI CCNNGG 2 cut(s) 18, 405
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 1 cut(s) 568
BseDI CCNNGG 2 cut(s) 18, 405
BseGI GGATG 2 cut(s) 178, 256
BseLI CCNNNNNNNGG 1 cut(s) 568
BsgI GTGCAG 1 cut(s) 610
BslI CCNNNNNNNGG 1 cut(s) 568
BsmI GAATGC 1 cut(s) 241
Bsp143I GATC 3 cut(s) 409, 550, 819
BspLI GGNNCC 2 cut(s) 16, 411
BspPI GGATC 3 cut(s) 404, 417, 545
BssECI CCNNGG 2 cut(s) 18, 405
BssMI GATC 3 cut(s) 409, 550, 819
BssSI CACGAG 1 cut(s) 414
BssT1I CCWWGG 1 cut(s) 405
Bst2BI CACGAG 1 cut(s) 414
BstC8I GCNNGC 2 cut(s) 86, 451
BstDEI CTNAG 1 cut(s) 395
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 178, 256
BstKTI GATC 3 cut(s) 412, 553, 822
BstMBI GATC 3 cut(s) 409, 550, 819
BstMWI GCNNNNNNNGC 2 cut(s) 94, 701
BstNSI RCATGY 1 cut(s) 453
BstSFI CTRYAG 1 cut(s) 675
BstV2I GAAGAC 1 cut(s) 310
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 2 cut(s) 178, 256
BtsIMutI CAGTG 1 cut(s) 684
Cac8I GCNNGC 2 cut(s) 86, 451
Cfr13I GGNCC 2 cut(s) 14, 769
Csp6I GTAC 1 cut(s) 255
CviAII CATG 3 cut(s) 212, 450, 776
CviJI RGCY 5 cut(s) 38, 44, 56, 399, 704
CviKI_1 RGCY 5 cut(s) 38, 44, 56, 399, 704
CviQI GTAC 1 cut(s) 255
DdeI CTNAG 1 cut(s) 395
DpnI GATC 3 cut(s) 411, 552, 821
DpnII GATC 3 cut(s) 409, 550, 819
DraI TTTAAA 1 cut(s) 436
Eco130I CCWWGG 1 cut(s) 405
Eco47I GGWCC 2 cut(s) 14, 769
Eco57I CTGAAG 2 cut(s) 462, 498
EcoO109I RGGNCCY 1 cut(s) 14
EcoT14I CCWWGG 1 cut(s) 405
EcoT22I ATGCAT 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 3 cut(s) 215, 453, 779
FatI CATG 3 cut(s) 211, 449, 775
FbaI TGATCA 1 cut(s) 819
FokI GGATG 2 cut(s) 185, 263
FspBI CTAG 2 cut(s) 509, 653
Hin1II CATG 3 cut(s) 215, 453, 779
HinfI GANTC 4 cut(s) 363, 572, 797, 812
HphI GGTGA 2 cut(s) 770, 829
Hpy188I TCNGA 4 cut(s) 382, 583, 619, 849
Hpy188III TCNNGA 5 cut(s) 149, 416, 476, 509, 562
Hpy99I CGWCG 1 cut(s) 267
HpyAV CCTTC 3 cut(s) 158, 778, 782
HpyCH4V TGCA 7 cut(s) 28, 97, 449, 453, 461, 524, 591
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 701
HpyF3I CTNAG 1 cut(s) 395
Hsp92II CATG 3 cut(s) 215, 453, 779
Ksp22I TGATCA 1 cut(s) 819
Kzo9I GATC 3 cut(s) 409, 550, 819
LpnPI CCDG 5 cut(s) 240, 243, 489, 575, 681
LweI GCATC 1 cut(s) 436
MaeI CTAG 2 cut(s) 509, 653
MalI GATC 3 cut(s) 411, 552, 821
MboI GATC 3 cut(s) 409, 550, 819
MboII GAAGA 8 cut(s) 137, 173, 310, 372, 455, 491, 755, 845
MfeI CAATTG 1 cut(s) 291
MflI RGATCY 1 cut(s) 409
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 1 cut(s) 423
Mph1103I ATGCAT 1 cut(s) 451
MseI TTAA 5 cut(s) 51, 329, 435, 528, 717
MslI CAYNNNNRTG 1 cut(s) 312
MunI CAATTG 1 cut(s) 291
Mva1269I GAATGC 1 cut(s) 241
MwoI GCNNNNNNNGC 2 cut(s) 94, 701
NdeII GATC 3 cut(s) 409, 550, 819
NlaIII CATG 3 cut(s) 215, 453, 779
NlaIV GGNNCC 2 cut(s) 16, 411
NsiI ATGCAT 1 cut(s) 451
NspI RCATGY 1 cut(s) 453
PaeI GCATGC 1 cut(s) 453
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 4 cut(s) 363, 572, 797, 812
PflMI CCANNNNNTGG 1 cut(s) 568
PpuMI RGGWCCY 1 cut(s) 14
PsiI TTATAA 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 14
PspN4I GGNNCC 2 cut(s) 16, 411
PspPI GGNCC 2 cut(s) 14, 769
PspPPI RGGWCCY 1 cut(s) 14
PsrI GAACNNNNNNTAC 2 cut(s) 375, 407
PsuI RGATCY 1 cut(s) 409
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 5 cut(s) 51, 329, 435, 528, 717
Sau3AI GATC 3 cut(s) 409, 550, 819
Sau96I GGNCC 2 cut(s) 14, 769
SetI ASST 7 cut(s) 40, 58, 169, 262, 401, 407, 706
SfaNI GCATC 1 cut(s) 436
SfcI CTRYAG 1 cut(s) 675
SinI GGWCC 2 cut(s) 14, 769
SmiMI CAYNNNNRTG 1 cut(s) 312
SphI GCATGC 1 cut(s) 453
SspMI CTAG 2 cut(s) 509, 653
StyI CCWWGG 1 cut(s) 405
TfiI GAWTC 4 cut(s) 363, 572, 797, 812
Tru1I TTAA 5 cut(s) 51, 329, 435, 528, 717
Tru9I TTAA 5 cut(s) 51, 329, 435, 528, 717
TscAI CASTG 1 cut(s) 691
TspDTI ATGAA 7 cut(s) 122, 248, 274, 415, 722, 764, 825
TspRI CASTG 1 cut(s) 691
Van91I CCANNNNNTGG 1 cut(s) 568
VpaK11BI GGWCC 2 cut(s) 14, 769
XapI RAATTY 4 cut(s) 119, 430, 565, 620
XbaI TCTAGA 1 cut(s) 508
XceI RCATGY 1 cut(s) 453
XspI CTAG 2 cut(s) 509, 653
Zsp2I ATGCAT 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.