Rw0G018380

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00819
OG0000122
Physical Location & Seq
Reverse (-)
12243 .. 13741
1499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G018380.1

Sequence Viewer

Length: 1284 bp
ATGACAGATCACCTGAAACCCAAGAGGTACAAAAATCTTTTGTCATGGTTTACAAGTGGTACTCCATCAAGTGATAGTGTCGATGAGATTAGAAGTGGGAGTGGGAGTAGGAGTAGAAATGTGACTGAGAATTCTGTTAATGATGTCCCTTTAAACCCTTCTCCATCTATTCCACTAGAAGAGTGTCATAATGAAAGAATTGAGAGAGAAGAAAGTTTTGATGTTAGTTCTCTAGAACGTGATCCAGGAATATGGCGTCCAATATGCAAGTACTCTTTGAATGAGTGTGACAATATTCGAAGAGCTTATGTGTTGGACAAAGCATTTTGCTTCCCTTGTTTCTTTTTTGATAGTTATCCATCCCATCATCCAGCATTTACTGAGCATGGGTTTCAAGGTTGGAAAAATGTTATGTCAAAAAAATCTGGCATTGTCTCTCACATGGGAGTCTTAAATTCCCCACATAATATTGCCATGCACAAATGGGAGTCATTAAGAAACCCATCTAAGCATATTGAAAGGGTGATTAGCACACAATCATCACAAGAAGTAGCAGATAACCGACTTCGGCTTATTACTACTATAGAGAGTGTAAGAGGTCATGATGAATCGGTTAATTCATCTAATGGTGGCAATTTCAATGCAGATGTGGATTCCTTTGGGAGAATGAATATAGATATTCGCAGAGTCTTACAAAATGCTCGTGGGAATGCCAAGTATACTTCTCCCATTATTCAAAAACAAATTTTAAATATACTTGGTAACAAAGTTAGAACCAAGATTCGGGAGGAAGTGGGAGATGCCAAATTTTGTATCCTTGTTGATGAAGCTGTTGATGTATCTAATAGGGAACAAATGTGTGCAAACACTTGTTCTCAAACTCTAAAAGATGAGATATCCAAAGTTCTTACTCAATATGATCTTCAAGTAGAAAATATGCATGGGCAAGGATATGATGGTGCTAGCAATATGCAGGGTGAATTTAATGGTTTACAAGCTTTGTTTTGTGAAGAGTGTCCATATGCATATTATGTTCATTGTTTTGCTCATCGCTTACAATTGACTTTAAATGCTGCAGCTAAAATGGTGCATGATATTTGGGAATTCTTTTCAACTCTAGGTTTGATTGTAAATTTTGTTGATTCTTCTGCAAAAAGACATTCTACTTTGAGAGTTATCAGAGAAGAAGAAATTGTAGATTTAGTGACTGCTGGAGCACTTGAGACTAGTAGAGGTGCTAATCAGCTTTGCACTTTGCAACGAGCAGGGGCTACTTATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

427

Amino Acids

48.18

Weight (kDa)

6.22

Isoelectric Point (pI)

59.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 127 - 287 4.1e-16 Domain of unknown function (DUF4371)
DUF4371 PF14291 289 - 330 6.9e-08 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 719
AclWI GGATC 1 cut(s) 236
AcsI RAATTY 7 cut(s) 130, 454, 744, 806, 980, 1103, 1132
AcyI GRCGYC 1 cut(s) 256
AfaI GTAC 3 cut(s) 29, 61, 272
AfiI CCNNNNNNNGG 1 cut(s) 783
AgsI TTSAA 7 cut(s) 280, 395, 518, 640, 737, 926, 1113
AhlI ACTAGT 1 cut(s) 1226
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 5 cut(s) 305, 830, 998, 1079, 1246
AluI AGCT 5 cut(s) 305, 830, 998, 1079, 1246
Alw21I GWGCWC 1 cut(s) 1219
Alw26I GTCTC 2 cut(s) 439, 1217
AlwI GGATC 1 cut(s) 236
ApeKI GCWGC 2 cut(s) 1073, 1076
ApoI RAATTY 7 cut(s) 130, 454, 744, 806, 980, 1103, 1132
AsuHPI GGTGA 2 cut(s) 535, 989
AsuII TTCGAA 1 cut(s) 298
AsuNHI GCTAGC 1 cut(s) 962
BauI CACGAG 1 cut(s) 702
Bbv12I GWGCWC 1 cut(s) 1219
BbvI GCAGC 2 cut(s) 1060, 1088
BccI CCATC 6 cut(s) 73, 172, 367, 372, 511, 950
BciT130I CCWGG 1 cut(s) 246
BciVI GTATCC 1 cut(s) 824
BcoDI GTCTC 2 cut(s) 439, 1217
BcuI ACTAGT 1 cut(s) 1226
BfaI CTAG 5 cut(s) 176, 233, 963, 1118, 1227
BfmI CTRYAG 2 cut(s) 582, 1074
BfuI GTATCC 1 cut(s) 824
BisI GCNGC 2 cut(s) 1074, 1077
BlsI GCNGC 2 cut(s) 1075, 1078
BmcAI AGTACT 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 246
BmrFI CCNGG 1 cut(s) 246
BmsI GCATC 1 cut(s) 790
BmtI GCTAGC 1 cut(s) 966
BpmI CTGGAG 1 cut(s) 1233
Bpu14I TTCGAA 1 cut(s) 298
BpuEI CTTGAG 1 cut(s) 1241
BsaBI GATNNNNATC 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 256
BsaXI ACNNNNNCTCC 4 cut(s) 91, 97, 121, 127
Bsc4I CCNNNNNNNGG 1 cut(s) 783
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 1 cut(s) 246
BseGI GGATG 2 cut(s) 359, 367
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 1 cut(s) 783
BseMII CTCAG 2 cut(s) 117, 372
BseXI GCAGC 2 cut(s) 1060, 1088
BsiHKAI GWGCWC 1 cut(s) 1219
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 783
BsmAI GTCTC 2 cut(s) 439, 1217
BsmFI GGGAC 1 cut(s) 131
BsmI GAATGC 1 cut(s) 715
Bsp119I TTCGAA 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 1219
Bsp143I GATC 3 cut(s) 7, 241, 919
BspCNI CTCAG 2 cut(s) 118, 373
BspHI TCATGA 1 cut(s) 601
BspMAI CTGCAG 1 cut(s) 1078
BspOI GCTAGC 1 cut(s) 966
BspPI GGATC 1 cut(s) 236
BspQI GCTCTTC 1 cut(s) 295
BspT104I TTCGAA 1 cut(s) 298
BssMI GATC 3 cut(s) 7, 241, 919
BssNAI GTATAC 1 cut(s) 720
BssNI GRCGYC 1 cut(s) 256
BssSI CACGAG 1 cut(s) 702
Bst1107I GTATAC 1 cut(s) 720
Bst2BI CACGAG 1 cut(s) 702
Bst2UI CCWGG 1 cut(s) 246
Bst6I CTCTTC 3 cut(s) 174, 295, 1005
BstACI GRCGYC 1 cut(s) 256
BstBI TTCGAA 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 964
BstDEI CTNAG 4 cut(s) 126, 381, 507, 1281
BstF5I GGATG 2 cut(s) 359, 367
BstKTI GATC 3 cut(s) 10, 244, 922
BstMAI GTCTC 2 cut(s) 439, 1217
BstMBI GATC 3 cut(s) 7, 241, 919
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 2 cut(s) 582, 1074
BstV1I GCAGC 2 cut(s) 1060, 1088
BstXI CCANNNNNNTGG 1 cut(s) 252
BstZ17I GTATAC 1 cut(s) 720
BsuI GTATCC 1 cut(s) 824
BtgZI GCGATG 1 cut(s) 1034
BtsCI GGATG 2 cut(s) 359, 367
Cac8I GCNNGC 1 cut(s) 964
CciI TCATGA 1 cut(s) 601
CseI GACGC 1 cut(s) 245
Csp6I GTAC 3 cut(s) 28, 60, 271
CviAII CATG 7 cut(s) 45, 386, 442, 475, 602, 941, 1091
CviJI RGCY 7 cut(s) 305, 571, 830, 998, 1079, 1246, 1271
CviKI_1 RGCY 7 cut(s) 305, 571, 830, 998, 1079, 1246, 1271
CviQI GTAC 3 cut(s) 28, 60, 271
DdeI CTNAG 4 cut(s) 126, 381, 507, 1281
DpnI GATC 3 cut(s) 9, 243, 921
DpnII GATC 3 cut(s) 7, 241, 919
DraI TTTAAA 3 cut(s) 153, 750, 1068
Eam1104I CTCTTC 3 cut(s) 174, 295, 1005
EarI CTCTTC 3 cut(s) 174, 295, 1005
Eco32I GATATC 1 cut(s) 897
EcoRI GAATTC 2 cut(s) 130, 1103
EcoRII CCWGG 1 cut(s) 244
EcoRV GATATC 1 cut(s) 897
EcoT22I ATGCAT 2 cut(s) 942, 1027
FaeI CATG 7 cut(s) 48, 389, 445, 478, 605, 944, 1094
FaqI GGGAC 1 cut(s) 131
FatI CATG 7 cut(s) 44, 385, 441, 474, 601, 940, 1090
FauNDI CATATG 1 cut(s) 1021
FblI GTMKAC 1 cut(s) 719
Fnu4HI GCNGC 2 cut(s) 1074, 1077
FokI GGATG 2 cut(s) 346, 354
Fsp4HI GCNGC 2 cut(s) 1074, 1077
FspBI CTAG 5 cut(s) 176, 233, 963, 1118, 1227
GluI GCNGC 2 cut(s) 1074, 1077
GsuI CTGGAG 1 cut(s) 1233
HgaI GACGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 256
Hin1II CATG 7 cut(s) 48, 389, 445, 478, 605, 944, 1094
HindIII AAGCTT 1 cut(s) 996
HinfI GANTC 7 cut(s) 447, 488, 608, 653, 687, 781, 1142
HphI GGTGA 2 cut(s) 535, 989
Hpy166II GTNNAC 3 cut(s) 51, 720, 992
Hpy188I TCNGA 1 cut(s) 1181
Hpy188III TCNNGA 3 cut(s) 233, 602, 785
Hpy8I GTNNAC 3 cut(s) 51, 720, 992
HpyAV CCTTC 1 cut(s) 168
HpyCH4IV ACGT 1 cut(s) 238
HpyF3I CTNAG 4 cut(s) 126, 381, 507, 1281
HpySE526I ACGT 1 cut(s) 238
Hsp92I GRCGYC 1 cut(s) 256
Hsp92II CATG 7 cut(s) 48, 389, 445, 478, 605, 944, 1094
Kzo9I GATC 3 cut(s) 7, 241, 919
LguI GCTCTTC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 1214
LpnPI CCDG 8 cut(s) 26, 231, 258, 384, 411, 959, 1197, 1251
Lsp1109I GCAGC 2 cut(s) 1060, 1088
LweI GCATC 1 cut(s) 790
MaeI CTAG 5 cut(s) 176, 233, 963, 1118, 1227
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 4 cut(s) 121, 287, 761, 1204
MalI GATC 3 cut(s) 9, 243, 921
MboI GATC 3 cut(s) 7, 241, 919
MboII GAAGA 8 cut(s) 191, 221, 312, 914, 1022, 1137, 1196, 1199
MfeI CAATTG 1 cut(s) 1058
MhlI GDGCHC 1 cut(s) 1219
MlyI GAGTC 3 cut(s) 456, 497, 696
MmeI TCCRAC 2 cut(s) 294, 380
MnlI CCTC 4 cut(s) 18, 590, 781, 1226
Mph1103I ATGCAT 2 cut(s) 942, 1027
MseI TTAA 8 cut(s) 138, 152, 452, 494, 615, 749, 984, 1067
MspR9I CCNGG 1 cut(s) 246
MunI CAATTG 1 cut(s) 1058
Mva1269I GAATGC 1 cut(s) 715
MvaI CCWGG 1 cut(s) 246
NdeI CATATG 1 cut(s) 1021
NdeII GATC 3 cut(s) 7, 241, 919
NheI GCTAGC 1 cut(s) 962
NlaIII CATG 7 cut(s) 48, 389, 445, 478, 605, 944, 1094
NmuCI GTSAC 3 cut(s) 121, 287, 1204
NsiI ATGCAT 2 cut(s) 942, 1027
NspV TTCGAA 1 cut(s) 298
PagI TCATGA 1 cut(s) 601
PciSI GCTCTTC 1 cut(s) 295
PctI GAATGC 1 cut(s) 715
PfeI GAWTC 4 cut(s) 608, 653, 781, 1142
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 2 cut(s) 1075, 1078
PleI GAGTC 3 cut(s) 455, 496, 695
PpsI GAGTC 3 cut(s) 455, 496, 695
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PstI CTGCAG 1 cut(s) 1078
RsaI GTAC 3 cut(s) 29, 61, 272
RsaNI GTAC 3 cut(s) 28, 60, 271
SapI GCTCTTC 1 cut(s) 295
SaqAI TTAA 8 cut(s) 138, 152, 452, 494, 615, 749, 984, 1067
SatI GCNGC 2 cut(s) 1074, 1077
Sau3AI GATC 3 cut(s) 7, 241, 919
ScaI AGTACT 1 cut(s) 272
SchI GAGTC 3 cut(s) 456, 497, 696
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 1219
SfaNI GCATC 1 cut(s) 790
SfcI CTRYAG 2 cut(s) 582, 1074
SfuI TTCGAA 1 cut(s) 298
SmlI CTYRAG 1 cut(s) 1220
SmoI CTYRAG 1 cut(s) 1220
SpeI ACTAGT 1 cut(s) 1226
SspI AATATT 2 cut(s) 295, 469
SspMI CTAG 5 cut(s) 176, 233, 963, 1118, 1227
StyD4I CCNGG 1 cut(s) 244
TaiI ACGT 1 cut(s) 241
TaqI TCGA 2 cut(s) 81, 298
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 4 cut(s) 608, 653, 781, 1142
Tru1I TTAA 8 cut(s) 138, 152, 452, 494, 615, 749, 984, 1067
Tru9I TTAA 8 cut(s) 138, 152, 452, 494, 615, 749, 984, 1067
TseFI GTSAC 3 cut(s) 121, 287, 1204
TseI GCWGC 2 cut(s) 1073, 1076
Tsp45I GTSAC 3 cut(s) 121, 287, 1204
TspDTI ATGAA 6 cut(s) 207, 609, 621, 683, 840, 1025
XapI RAATTY 7 cut(s) 130, 454, 744, 806, 980, 1103, 1132
XbaI TCTAGA 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 719
XspI CTAG 5 cut(s) 176, 233, 963, 1118, 1227
ZrmI AGTACT 1 cut(s) 272
Zsp2I ATGCAT 2 cut(s) 942, 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.