Rmu_sc0000021.1_g000011

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000021.1
OG0000122
Physical Location & Seq
Reverse (-)
70654 .. 73582
2929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000021.1_g000011.1.cds

Sequence Viewer

Length: 1050 bp
atggaagaagaaattgcagatttagtggctgctagagcacttgagactggtacaggtgctaatcagacttccactttgcaacgagcaggggctactcgttggggttcacatctttgctctatttcaagtttgattaagttatttggagctacccaaacaactcttgcaaatttggttgcaaatggaccaaataaagtacaaggagaagcaaagagtgtaggtaatgcaatgaaacgttttgattttgtgtttcgcttgcttttgatgcatgatgtcatgaagattactgattttctttgtcagtcattgcaaaaaaaagccatagacatcttgaatgctctcaattttctttcaatcacaaaatcaaaacttcaagatatgagagaagatggttgggatgatttgattatgagggttgaagcattttgttgtgagtatgatattgaaatgccagatatgtctactccttataagaaaagtacaagggcttgtgaacataatattacaaatgagcattatcaagtcaatatacttaatgttgtgatagactttcaattggcagagttggatagtagatttacagataattcgttgaagatccttattcttagtgctacatttgatccacgtgataattttcgatcatttaaatgtgaagatgtttgcaatcttgctttgagattttatcctcatgattttacatcatatgatatgcttgctctagatatggagtgtgggcattttctagcagatattcataaggatccaagatttgccaacacaactactgtgtctgatttgtgtcagcgatcgaacctagtttactgtgatcttgaggagagtctgttgttgctgattatgcttggtgttgtcgcttttgatgtagccttgcttcaaaacaagcagcattatcctatatgtcagagagatactcaacatcagcaaaatctttcaaaacgcttatcattttgggatgaggatagtggatacagactagtgtttgtggcgttcttgctgtgtgatgggtctgaatccatcgtctctctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

349

Amino Acids

39.62

Weight (kDa)

5.07

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 471
AccI GTMKAC 1 cut(s) 461
AclI AACGTT 1 cut(s) 235
AclWI GGATC 4 cut(s) 592, 617, 758, 771
AcsI RAATTY 1 cut(s) 169
AcvI CACGTG 1 cut(s) 629
AfaI GTAC 3 cut(s) 52, 198, 481
AhlI ACTAGT 1 cut(s) 994
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 2 cut(s) 38, 1045
AlwI GGATC 4 cut(s) 592, 617, 758, 771
ApeKI GCWGC 2 cut(s) 29, 904
ApoI RAATTY 1 cut(s) 169
ArsI GACNNNNNNTTYG 2 cut(s) 58, 90
AspS9I GGNCC 1 cut(s) 185
AvaII GGWCC 1 cut(s) 185
BamHI GGATCC 1 cut(s) 763
BarI GAAGNNNNNNTAC 2 cut(s) 876, 908
BbrPI CACGTG 1 cut(s) 629
Bbv12I GWGCWC 1 cut(s) 40
BbvI GCAGC 2 cut(s) 16, 916
BccI CCATC 3 cut(s) 383, 1016, 1043
BciVI GTATCC 1 cut(s) 980
BcoDI GTCTC 2 cut(s) 38, 1045
BcuI ACTAGT 1 cut(s) 994
BfaI CTAG 5 cut(s) 33, 722, 746, 818, 995
BfmI CTRYAG 1 cut(s) 1046
BfuI GTATCC 1 cut(s) 980
BisI GCNGC 2 cut(s) 30, 905
BlsI GCNGC 2 cut(s) 31, 906
Bme18I GGWCC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 765
BmsI GCATC 1 cut(s) 255
BplI GAGNNNNNCTC 2 cut(s) 916, 948
BpuEI CTTGAG 2 cut(s) 62, 854
BsaAI YACGTR 1 cut(s) 629
BsaXI ACNNNNNCTCC 2 cut(s) 830, 860
Bse1I ACTGG 1 cut(s) 52
Bse3DI GCAATG 2 cut(s) 234, 305
BseGI GGATG 2 cut(s) 403, 979
BseMI GCAATG 2 cut(s) 234, 305
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 1 cut(s) 851
BseXI GCAGC 2 cut(s) 16, 916
Bsh1285I CGRYCG 1 cut(s) 812
BsiEI CGRYCG 1 cut(s) 812
BsiHKAI GWGCWC 1 cut(s) 40
BsmAI GTCTC 2 cut(s) 38, 1045
BsmBI CGTCTC 1 cut(s) 1045
BsmI GAATGC 1 cut(s) 340
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 6 cut(s) 597, 622, 641, 763, 809, 829
BspHI TCATGA 2 cut(s) 276, 691
BspLI GGNNCC 1 cut(s) 765
BspPI GGATC 4 cut(s) 592, 617, 758, 771
BsrDI GCAATG 2 cut(s) 234, 305
BsrI ACTGG 1 cut(s) 52
BssMI GATC 6 cut(s) 597, 622, 641, 763, 809, 829
Bst4CI ACNGT 2 cut(s) 790, 827
BstBAI YACGTR 1 cut(s) 629
BstC8I GCNNGC 2 cut(s) 257, 717
BstDEI CTNAG 1 cut(s) 608
BstF5I GGATG 2 cut(s) 403, 979
BstKTI GATC 6 cut(s) 600, 625, 644, 766, 812, 832
BstMAI GTCTC 2 cut(s) 38, 1045
BstMBI GATC 6 cut(s) 597, 622, 641, 763, 809, 829
BstMCI CGRYCG 1 cut(s) 812
BstMWI GCNNNNNNNGC 3 cut(s) 35, 265, 859
BstSFI CTRYAG 1 cut(s) 1046
BstV1I GCAGC 2 cut(s) 16, 916
BstX2I RGATCY 2 cut(s) 597, 763
BstYI RGATCY 2 cut(s) 597, 763
BsuI GTATCC 1 cut(s) 980
BtsCI GGATG 2 cut(s) 403, 979
Cac8I GCNNGC 2 cut(s) 257, 717
CciI TCATGA 2 cut(s) 276, 691
Cfr13I GGNCC 1 cut(s) 185
Csp6I GTAC 3 cut(s) 51, 197, 480
CviAII CATG 3 cut(s) 269, 277, 692
CviJI RGCY 6 cut(s) 29, 92, 149, 320, 488, 887
CviKI_1 RGCY 6 cut(s) 29, 92, 149, 320, 488, 887
CviQI GTAC 3 cut(s) 51, 197, 480
DdeI CTNAG 1 cut(s) 608
DpnI GATC 6 cut(s) 599, 624, 643, 765, 811, 831
DpnII GATC 6 cut(s) 597, 622, 641, 763, 809, 829
DraI TTTAAA 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 185
Eco72I CACGTG 1 cut(s) 629
EcoT22I ATGCAT 1 cut(s) 270
Esp3I CGTCTC 1 cut(s) 1045
FaeI CATG 3 cut(s) 272, 280, 695
FatI CATG 3 cut(s) 268, 276, 691
FauNDI CATATG 1 cut(s) 706
FblI GTMKAC 1 cut(s) 461
Fnu4HI GCNGC 2 cut(s) 30, 905
FokI GGATG 2 cut(s) 410, 986
Fsp4HI GCNGC 2 cut(s) 30, 905
FspBI CTAG 5 cut(s) 33, 722, 746, 818, 995
GluI GCNGC 2 cut(s) 30, 905
Hin1II CATG 3 cut(s) 272, 280, 695
HinfI GANTC 2 cut(s) 841, 1031
Hpy166II GTNNAC 4 cut(s) 107, 462, 494, 823
Hpy188I TCNGA 4 cut(s) 66, 796, 924, 1030
Hpy188III TCNNGA 6 cut(s) 277, 331, 374, 692, 722, 833
Hpy8I GTNNAC 4 cut(s) 107, 462, 494, 823
HpyCH4III ACNGT 2 cut(s) 790, 827
HpyCH4IV ACGT 2 cut(s) 235, 628
HpyCH4V TGCA 8 cut(s) 17, 79, 167, 179, 227, 268, 310, 666
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 265, 859
HpyF3I CTNAG 1 cut(s) 608
HpySE526I ACGT 2 cut(s) 235, 628
Hsp92II CATG 3 cut(s) 272, 280, 695
Kzo9I GATC 6 cut(s) 597, 622, 641, 763, 809, 829
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 4 cut(s) 33, 39, 72, 465
Lsp1109I GCAGC 2 cut(s) 16, 916
LweI GCATC 1 cut(s) 255
MaeI CTAG 5 cut(s) 33, 722, 746, 818, 995
MaeII ACGT 2 cut(s) 235, 628
MalI GATC 6 cut(s) 599, 624, 643, 765, 811, 831
MboI GATC 6 cut(s) 597, 622, 641, 763, 809, 829
MboII GAAGA 6 cut(s) 17, 20, 292, 398, 607, 668
MfeI CAATTG 1 cut(s) 554
MflI RGATCY 2 cut(s) 597, 763
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 6 cut(s) 12, 169, 343, 554, 586, 634
MlyI GAGTC 1 cut(s) 850
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 4 cut(s) 405, 699, 829, 970
Mph1103I ATGCAT 1 cut(s) 270
MseI TTAA 3 cut(s) 135, 534, 648
MslI CAYNNNNRTG 1 cut(s) 649
MunI CAATTG 1 cut(s) 554
Mva1269I GAATGC 1 cut(s) 340
MwoI GCNNNNNNNGC 3 cut(s) 35, 265, 859
NdeI CATATG 1 cut(s) 706
NdeII GATC 6 cut(s) 597, 622, 641, 763, 809, 829
NlaIII CATG 3 cut(s) 272, 280, 695
NlaIV GGNNCC 1 cut(s) 765
NsiI ATGCAT 1 cut(s) 270
PagI TCATGA 2 cut(s) 276, 691
PctI GAATGC 1 cut(s) 340
PfeI GAWTC 1 cut(s) 1031
PkrI GCNGC 2 cut(s) 31, 906
Ple19I CGATCG 1 cut(s) 812
PleI GAGTC 1 cut(s) 849
PmaCI CACGTG 1 cut(s) 629
PmlI CACGTG 1 cut(s) 629
PpsI GAGTC 1 cut(s) 849
Ppu21I YACGTR 1 cut(s) 629
PsiI TTATAA 1 cut(s) 471
Psp1406I AACGTT 1 cut(s) 235
PspCI CACGTG 1 cut(s) 629
PspN4I GGNNCC 1 cut(s) 765
PspPI GGNCC 1 cut(s) 185
PsrI GAACNNNNNNTAC 2 cut(s) 806, 838
PsuI RGATCY 2 cut(s) 597, 763
PvuI CGATCG 1 cut(s) 812
RsaI GTAC 3 cut(s) 52, 198, 481
RsaNI GTAC 3 cut(s) 51, 197, 480
RseI CAYNNNNRTG 1 cut(s) 649
SaqAI TTAA 3 cut(s) 135, 534, 648
SatI GCNGC 2 cut(s) 30, 905
Sau3AI GATC 6 cut(s) 597, 622, 641, 763, 809, 829
Sau96I GGNCC 1 cut(s) 185
SchI GAGTC 1 cut(s) 850
SduI GDGCHC 1 cut(s) 40
SetI ASST 6 cut(s) 58, 151, 223, 238, 631, 819
SfaNI GCATC 1 cut(s) 255
SfcI CTRYAG 1 cut(s) 1046
SinI GGWCC 1 cut(s) 185
SmiI ATTTAAAT 1 cut(s) 649
SmiMI CAYNNNNRTG 1 cut(s) 649
SmlI CTYRAG 2 cut(s) 41, 833
SmoI CTYRAG 2 cut(s) 41, 833
SpeI ACTAGT 1 cut(s) 994
Sse9I AATT 6 cut(s) 12, 169, 343, 554, 586, 634
SspI AATATT 1 cut(s) 502
SspMI CTAG 5 cut(s) 33, 722, 746, 818, 995
SwaI ATTTAAAT 1 cut(s) 649
TaaI ACNGT 2 cut(s) 790, 827
TaiI ACGT 2 cut(s) 238, 631
TaqI TCGA 2 cut(s) 640, 812
TasI AATT 6 cut(s) 12, 169, 343, 554, 586, 634
TatI WGTACW 2 cut(s) 196, 479
TfiI GAWTC 1 cut(s) 1031
Tru1I TTAA 3 cut(s) 135, 534, 648
Tru9I TTAA 3 cut(s) 135, 534, 648
TseI GCWGC 2 cut(s) 29, 904
TspDTI ATGAA 3 cut(s) 245, 293, 746
VpaK11BI GGWCC 1 cut(s) 185
XapI RAATTY 1 cut(s) 169
XbaI TCTAGA 1 cut(s) 721
XmiI GTMKAC 1 cut(s) 461
XspI CTAG 5 cut(s) 33, 722, 746, 818, 995
Zsp2I ATGCAT 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.