Rw7G023750

Zinc finger MYM-type protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
28575031 .. 28576551
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G023750.1

Sequence Viewer

Length: 1221 bp
ATGACGGATCACAGGAAACCCAAGAGGTACAAAAATCTTCTGTCATGGTTTGCAAATGATACTCCATCAAGTGATAGTGTCGATGGGAGTGGGAGTGGGAGTGGGAGTAGAAATGTGATTGATAATTCTGTTAATGATTACCCTTTGAATGAGCGTGACAATATTCAAAGAGCTTATGTGTTGGACAAAGCATTTTGCTTCCCTTGTTTCTTGTTTGATAGTTATCCATCCCATCATCCAGCATTTACTGAGCATGGGTTTCAAGGTTGGAAGAATGTTATGTCAAGAAAATTGGGCATTGTCCATCACATAGGGGGCATAAATTCCTCACATAATATTTCCATGCACAAGTGGGAGTCACTAAGAAACCCATCTAAGCGTATTGAAAGAGTGATTAGCACACAATCATCACAAGAAGTAGCAGATAACCGACTCCGGCTTATTACTACTATAGAGAGTGTAAGGTTGTTGGCACACCAAGGATGTGTTTTTAGAGGCCATGATGAATCGGTTAATTCATCCAATGGTGGCAATTTCAATGCAGTTGTGTATTCGTTTGGAAGAATAAATATAGATGTTCGCAAAGTCTTACAAAATGCTCCTGGAAATGCCAAGTATATTTCTCCCATTATTCAAAAACAAATTGCAAATATACTTGGTAACAAAGTTAGAACCAAGATTCAGGAGGAAGTGGGAGATGCCAAATTTTGTATCCGTGTTGATGAAGCGGTTGATGTATCTAATAGGGAACAAATGGCTATCATTCTTCGATTTGTTGATTACACTTGTTCTCAAACTCTAAAAGATGAGATATCCAAAGTCCTTACTCAATATCATCTTCAAGTTGAAAATATGCGTGGGCAAGGATATGATGGTGCTAGCAACATGCGGGGTGAATATAATGGTTTACAAGCTTTGTTTCTTGAAGAGTGTCCATATGCATATTATGGTCATTGCTTTGCTCATCACTTACAATTGACTTTAAATGCTGCAGCTAAAGGGGTGCATGATATTTGGAAATTCTTTTCAACTCTAAATTTGATTGTAAATTTAGTTGATTCTTCTGCAAAAAGACATTCAGCTTTTAGAGTTATCAGAGAAGAAGAAATTGCAAATTTAGTGGCTGCTGGAGCACTTGAGACAGGTACAGGTGCTAATCAGACTTGCACTTTGCAACGAGCAGGGGCTACTCGTTGGGGTTCACATCTTCACTCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

406

Amino Acids

45.53

Weight (kDa)

8.68

Isoelectric Point (pI)

44.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 82 - 302 2.4e-38 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 728, 889
AclWI GGATC 1 cut(s) 15
AcsI RAATTY 6 cut(s) 322, 704, 1019, 1036, 1048, 1114
AfaI GTAC 2 cut(s) 29, 1147
AjnI CCWGG 1 cut(s) 601
AluBI AGCT 4 cut(s) 173, 914, 995, 1082
AluI AGCT 4 cut(s) 173, 914, 995, 1082
Alw21I GWGCWC 1 cut(s) 1135
Alw26I GTCTC 1 cut(s) 1133
AlwI GGATC 1 cut(s) 15
AoxI GGCC 1 cut(s) 496
ApeKI GCWGC 3 cut(s) 989, 992, 1124
ApoI RAATTY 6 cut(s) 322, 704, 1019, 1036, 1048, 1114
ArsI GACNNNNNNTTYG 2 cut(s) 1153, 1185
AsuHPI GGTGA 1 cut(s) 905
AsuNHI GCTAGC 1 cut(s) 878
Bbv12I GWGCWC 1 cut(s) 1135
BbvI GCAGC 3 cut(s) 976, 1004, 1111
BccI CCATC 7 cut(s) 73, 77, 235, 240, 312, 379, 866
BciT130I CCWGG 1 cut(s) 603
BciVI GTATCC 1 cut(s) 722
BcoDI GTCTC 1 cut(s) 1133
BfaI CTAG 1 cut(s) 879
BfmI CTRYAG 2 cut(s) 450, 990
BfuI GTATCC 1 cut(s) 722
BisI GCNGC 3 cut(s) 990, 993, 1125
BlsI GCNGC 3 cut(s) 991, 994, 1126
Bme1390I CCNGG 1 cut(s) 603
BmrFI CCNGG 1 cut(s) 603
BmsI GCATC 1 cut(s) 688
BmtI GCTAGC 1 cut(s) 882
BpmI CTGGAG 1 cut(s) 1149
BpuEI CTTGAG 1 cut(s) 1157
BsaBI GATNNNNATC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 478
BsaXI ACNNNNNCTCC 6 cut(s) 79, 85, 91, 109, 115, 121
Bse3DI GCAATG 1 cut(s) 952
Bse8I GATNNNNATC 1 cut(s) 222
BseBI CCWGG 1 cut(s) 603
BseDI CCNNGG 1 cut(s) 478
BseGI GGATG 4 cut(s) 227, 235, 488, 518
BseJI GATNNNNATC 1 cut(s) 222
BseMI GCAATG 1 cut(s) 952
BseMII CTCAG 1 cut(s) 240
BseXI GCAGC 3 cut(s) 976, 1004, 1111
BshFI GGCC 1 cut(s) 498
BsiHKAI GWGCWC 1 cut(s) 1135
BsiSI CCGG 1 cut(s) 436
BsmAI GTCTC 1 cut(s) 1133
BsnI GGCC 1 cut(s) 498
Bsp1286I GDGCHC 1 cut(s) 1135
Bsp143I GATC 1 cut(s) 7
BspACI CCGC 2 cut(s) 728, 889
BspANI GGCC 1 cut(s) 498
BspCNI CTCAG 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 994
BspOI GCTAGC 1 cut(s) 882
BspPI GGATC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 952
BssECI CCNNGG 1 cut(s) 478
BssMI GATC 1 cut(s) 7
BssT1I CCWWGG 1 cut(s) 478
Bst2UI CCWGG 1 cut(s) 603
Bst6I CTCTTC 1 cut(s) 921
BstC8I GCNNGC 1 cut(s) 880
BstDEI CTNAG 3 cut(s) 249, 362, 375
BstF5I GGATG 4 cut(s) 227, 235, 488, 518
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 1133
BstMBI GATC 1 cut(s) 7
BstMWI GCNNNNNNNGC 1 cut(s) 1130
BstNI CCWGG 1 cut(s) 603
BstNSI RCATGY 1 cut(s) 889
BstSCI CCNGG 1 cut(s) 601
BstSFI CTRYAG 2 cut(s) 450, 990
BstV1I GCAGC 3 cut(s) 976, 1004, 1111
BsuI GTATCC 1 cut(s) 722
BsuRI GGCC 1 cut(s) 498
BtsCI GGATG 4 cut(s) 227, 235, 488, 518
Cac8I GCNNGC 1 cut(s) 880
Csp6I GTAC 2 cut(s) 28, 1146
CspCI CAANNNNNGTGG 2 cut(s) 1101, 1136
CviAII CATG 6 cut(s) 45, 254, 343, 500, 886, 1007
CviJI RGCY 9 cut(s) 173, 439, 498, 758, 914, 995, 1082, 1124, 1187
CviKI_1 RGCY 9 cut(s) 173, 439, 498, 758, 914, 995, 1082, 1124, 1187
CviQI GTAC 2 cut(s) 28, 1146
DdeI CTNAG 3 cut(s) 249, 362, 375
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
DraI TTTAAA 1 cut(s) 984
Eam1104I CTCTTC 1 cut(s) 921
EarI CTCTTC 1 cut(s) 921
Eco130I CCWWGG 1 cut(s) 478
Eco32I GATATC 1 cut(s) 813
EcoRII CCWGG 1 cut(s) 601
EcoRV GATATC 1 cut(s) 813
EcoT14I CCWWGG 1 cut(s) 478
EcoT22I ATGCAT 1 cut(s) 943
ErhI CCWWGG 1 cut(s) 478
FaeI CATG 6 cut(s) 48, 257, 346, 503, 889, 1010
FatI CATG 6 cut(s) 44, 253, 342, 499, 885, 1006
FauI CCCGC 1 cut(s) 882
FauNDI CATATG 1 cut(s) 937
Fnu4HI GCNGC 3 cut(s) 990, 993, 1125
FokI GGATG 4 cut(s) 214, 222, 495, 505
Fsp4HI GCNGC 3 cut(s) 990, 993, 1125
FspBI CTAG 1 cut(s) 879
GluI GCNGC 3 cut(s) 990, 993, 1125
GsuI CTGGAG 1 cut(s) 1149
HaeIII GGCC 1 cut(s) 498
HapII CCGG 1 cut(s) 436
Hin1II CATG 6 cut(s) 48, 257, 346, 503, 889, 1010
HindIII AAGCTT 1 cut(s) 912
HinfI GANTC 5 cut(s) 356, 432, 506, 679, 1058
HpaII CCGG 1 cut(s) 436
HphI GGTGA 1 cut(s) 905
Hpy166II GTNNAC 2 cut(s) 908, 1202
Hpy188I TCNGA 2 cut(s) 1097, 1161
Hpy188III TCNNGA 3 cut(s) 285, 683, 923
Hpy8I GTNNAC 2 cut(s) 908, 1202
HpyF10VI GCNNNNNNNGC 1 cut(s) 1130
HpyF3I CTNAG 3 cut(s) 249, 362, 375
Hsp92II CATG 6 cut(s) 48, 257, 346, 503, 889, 1010
Kzo9I GATC 1 cut(s) 7
LmnI GCTCC 2 cut(s) 604, 1130
LpnPI CCDG 9 cut(s) 252, 449, 588, 615, 668, 1113, 1128, 1134, 1167
Lsp1109I GCAGC 3 cut(s) 976, 1004, 1111
LweI GCATC 1 cut(s) 688
MaeI CTAG 1 cut(s) 879
MaeIII GTNAC 3 cut(s) 155, 357, 659
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MfeI CAATTG 1 cut(s) 974
MhlI GDGCHC 1 cut(s) 1135
MlyI GAGTC 2 cut(s) 365, 426
MmeI TCCRAC 2 cut(s) 162, 248
MnlI CCTC 4 cut(s) 18, 337, 488, 679
Mph1103I ATGCAT 1 cut(s) 943
MseI TTAA 3 cut(s) 132, 513, 983
MspI CCGG 1 cut(s) 436
MspR9I CCNGG 1 cut(s) 603
MunI CAATTG 1 cut(s) 974
MvaI CCWGG 1 cut(s) 603
MwoI GCNNNNNNNGC 1 cut(s) 1130
NdeI CATATG 1 cut(s) 937
NdeII GATC 1 cut(s) 7
NheI GCTAGC 1 cut(s) 878
NlaIII CATG 6 cut(s) 48, 257, 346, 503, 889, 1010
NmuCI GTSAC 2 cut(s) 155, 357
NsiI ATGCAT 1 cut(s) 943
NspI RCATGY 1 cut(s) 889
PfeI GAWTC 3 cut(s) 506, 679, 1058
PfoI TCCNGGA 1 cut(s) 601
PkrI GCNGC 3 cut(s) 991, 994, 1126
PleI GAGTC 2 cut(s) 364, 426
PpsI GAGTC 2 cut(s) 364, 426
Psp6I CCWGG 1 cut(s) 601
PspGI CCWGG 1 cut(s) 601
PstI CTGCAG 1 cut(s) 994
RsaI GTAC 2 cut(s) 29, 1147
RsaNI GTAC 2 cut(s) 28, 1146
SaqAI TTAA 3 cut(s) 132, 513, 983
SatI GCNGC 3 cut(s) 990, 993, 1125
Sau3AI GATC 1 cut(s) 7
SchI GAGTC 2 cut(s) 365, 426
ScrFI CCNGG 1 cut(s) 603
SduI GDGCHC 1 cut(s) 1135
SetI ASST 9 cut(s) 29, 175, 268, 467, 916, 997, 1084, 1147, 1153
SfaNI GCATC 1 cut(s) 688
SfcI CTRYAG 2 cut(s) 450, 990
SmlI CTYRAG 1 cut(s) 1136
SmoI CTYRAG 1 cut(s) 1136
SsiI CCGC 2 cut(s) 728, 889
SspI AATATT 2 cut(s) 163, 337
SspMI CTAG 1 cut(s) 879
StyD4I CCNGG 1 cut(s) 601
StyI CCWWGG 1 cut(s) 478
TaqI TCGA 2 cut(s) 81, 769
TfiI GAWTC 3 cut(s) 506, 679, 1058
Tru1I TTAA 3 cut(s) 132, 513, 983
Tru9I TTAA 3 cut(s) 132, 513, 983
TseFI GTSAC 2 cut(s) 155, 357
TseI GCWGC 3 cut(s) 989, 992, 1124
Tsp45I GTSAC 2 cut(s) 155, 357
TspDTI ATGAA 3 cut(s) 507, 519, 738
TspGWI ACGGA 2 cut(s) 20, 704
XapI RAATTY 6 cut(s) 322, 704, 1019, 1036, 1048, 1114
XceI RCATGY 1 cut(s) 889
XspI CTAG 1 cut(s) 879
Zsp2I ATGCAT 1 cut(s) 943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.