Rw1G002320

Zinc finger MYM-type protein 1-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
4130333 .. 4130892
560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G002320.1

Sequence Viewer

Length: 501 bp
ATGGAAAGATTCTTTAAAAGAAAATCAGACATGCTACCACCCCTTGAAGATAGCCGTATTCGAGTAGAAATAAACTTGGCAAATCTTCCTTCAGATCCTGGATTATGTATCGGAATTTCAGATTATGATCTGAATATTCAAGACCAAGTTCGAAGAGAATATTTGCAAAGGGGTCCTTGTCAGCCCAGAGAACACAAATTTGTTAAAACCAATTTTGGAGCTACCAAACGAAGGTTTATATCTGCTTGGTTCGATGATTTTCCTAACTGGTTGGAATATAGTATAGACAAAGATCGAGCATATTGTCTGTGCTACTACCTGTTTAAAGCAAATATTGGAGATCAAGCAGGTGGTGATGTCTTTACTAGTGATGGTTTTCGAAATTGGAAAAAGAAAGAAAGATTATATGATCATGTCGGAGACCACAGCAGTGCTCATAATCAAGCTTTGAAGAAGTCAATCCAGAACAGATTATCGAATTCGGCTCACTGCATCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

166

Amino Acids

19.41

Weight (kDa)

8.79

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 338
Acc36I ACCTGC 1 cut(s) 338
AclWI GGATC 1 cut(s) 89
AcsI RAATTY 3 cut(s) 114, 197, 478
AcuI CTGAAG 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 231
AgsI TTSAA 3 cut(s) 47, 140, 451
AhlI ACTAGT 1 cut(s) 365
AjnI CCWGG 1 cut(s) 97
AleI CACNNNNGTG 1 cut(s) 429
AluBI AGCT 2 cut(s) 221, 446
AluI AGCT 2 cut(s) 221, 446
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 1 cut(s) 414
AlwI GGATC 1 cut(s) 89
AlwNI CAGNNNCTG 1 cut(s) 98
ApoI RAATTY 3 cut(s) 114, 197, 478
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 365
AsuII TTCGAA 2 cut(s) 151, 379
AvaII GGWCC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 436
BccI CCATC 1 cut(s) 365
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 99
BclI TGATCA 1 cut(s) 409
BcoDI GTCTC 1 cut(s) 414
BcuI ACTAGT 1 cut(s) 365
BfaI CTAG 1 cut(s) 366
BfuAI ACCTGC 1 cut(s) 338
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 99
Bpu14I TTCGAA 2 cut(s) 151, 379
BsaBI GATNNNNATC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 414
Bsc4I CCNNNNNNNGG 1 cut(s) 231
Bse1I ACTGG 1 cut(s) 272
Bse8I GATNNNNATC 1 cut(s) 126
BseBI CCWGG 1 cut(s) 99
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 231
BseNI ACTGG 1 cut(s) 272
BsiHKAI GWGCWC 1 cut(s) 436
BslI CCNNNNNNNGG 1 cut(s) 231
BsmAI GTCTC 1 cut(s) 414
Bso31I GGTCTC 1 cut(s) 414
Bsp119I TTCGAA 2 cut(s) 151, 379
Bsp1286I GDGCHC 1 cut(s) 436
Bsp143I GATC 5 cut(s) 94, 127, 292, 340, 409
BspLI GGNNCC 1 cut(s) 174
BspMI ACCTGC 1 cut(s) 338
BspPI GGATC 1 cut(s) 89
BspT104I TTCGAA 2 cut(s) 151, 379
BspTNI GGTCTC 1 cut(s) 414
BsrI ACTGG 1 cut(s) 272
BssMI GATC 5 cut(s) 94, 127, 292, 340, 409
Bst2UI CCWGG 1 cut(s) 99
Bst6I CTCTTC 1 cut(s) 148
BstBI TTCGAA 2 cut(s) 151, 379
BstKTI GATC 5 cut(s) 97, 130, 295, 343, 412
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 5 cut(s) 94, 127, 292, 340, 409
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 97
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BtsI GCAGTG 2 cut(s) 436, 487
BtsIMutI CAGTG 2 cut(s) 436, 487
BveI ACCTGC 1 cut(s) 338
CaiI CAGNNNCTG 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 173
CviAII CATG 2 cut(s) 31, 413
CviJI RGCY 5 cut(s) 54, 184, 221, 446, 485
CviKI_1 RGCY 5 cut(s) 54, 184, 221, 446, 485
DpnI GATC 5 cut(s) 96, 129, 294, 342, 411
DpnII GATC 5 cut(s) 94, 127, 292, 340, 409
DraI TTTAAA 2 cut(s) 16, 325
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Eco31I GGTCTC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 75
EcoO109I RGGNCCY 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 97
FaeI CATG 2 cut(s) 34, 416
FalI AAGNNNNNCTT 2 cut(s) 160, 192
FatI CATG 2 cut(s) 30, 412
FbaI TGATCA 1 cut(s) 409
FspBI CTAG 1 cut(s) 366
Hin1II CATG 2 cut(s) 34, 416
HindIII AAGCTT 1 cut(s) 444
HinfI GANTC 1 cut(s) 9
HphI GGTGA 1 cut(s) 365
Hpy188I TCNGA 6 cut(s) 28, 94, 113, 121, 132, 419
Hpy188III TCNNGA 2 cut(s) 140, 463
HpyAV CCTTC 2 cut(s) 99, 225
HpyCH4V TGCA 2 cut(s) 166, 492
Hsp92II CATG 2 cut(s) 34, 416
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 5 cut(s) 94, 127, 292, 340, 409
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 7 cut(s) 84, 111, 199, 253, 332, 333, 476
MaeI CTAG 1 cut(s) 366
MalI GATC 5 cut(s) 96, 129, 294, 342, 411
MboI GATC 5 cut(s) 94, 127, 292, 340, 409
MboII GAAGA 4 cut(s) 59, 77, 165, 463
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 5 cut(s) 114, 197, 211, 382, 478
MmeI TCCRAC 2 cut(s) 252, 397
MseI TTAA 3 cut(s) 15, 204, 324
MslI CAYNNNNRTG 1 cut(s) 429
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
NdeII GATC 5 cut(s) 94, 127, 292, 340, 409
NlaIII CATG 2 cut(s) 34, 416
NlaIV GGNNCC 1 cut(s) 174
NspI RCATGY 1 cut(s) 34
NspV TTCGAA 2 cut(s) 151, 379
OliI CACNNNNGTG 1 cut(s) 429
PaqCI CACCTGC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 9
PfoI TCCNGGA 1 cut(s) 97
PpuMI RGGWCCY 1 cut(s) 173
Psp5II RGGWCCY 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 174
PspPI GGNCC 1 cut(s) 173
PspPPI RGGWCCY 1 cut(s) 173
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 429
SaqAI TTAA 3 cut(s) 15, 204, 324
Sau3AI GATC 5 cut(s) 94, 127, 292, 340, 409
Sau96I GGNCC 1 cut(s) 173
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 436
SetI ASST 5 cut(s) 223, 236, 321, 352, 448
SfuI TTCGAA 2 cut(s) 151, 379
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 429
SpeI ACTAGT 1 cut(s) 365
Sse9I AATT 5 cut(s) 114, 197, 211, 382, 478
SspI AATATT 3 cut(s) 136, 161, 334
SspMI CTAG 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 97
TaqI TCGA 6 cut(s) 61, 151, 252, 295, 379, 476
TasI AATT 5 cut(s) 114, 197, 211, 382, 478
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 3 cut(s) 15, 204, 324
Tru9I TTAA 3 cut(s) 15, 204, 324
TscAI CASTG 2 cut(s) 436, 494
TspRI CASTG 2 cut(s) 436, 494
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 3 cut(s) 114, 197, 478
XceI RCATGY 1 cut(s) 34
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.