Rmu_sc0003063.1_g000006

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003063.1
OG0000122
Physical Location & Seq
Forward (+)
13966 .. 15620
1655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003063.1_g000006.1.cds

Sequence Viewer

Length: 786 bp
atgccctttaccattacaataagtgcatttgggatgtgccctgcaatttttcgggctatggtttgtcattctgaattttctgtcggagatttcacatgtcaactggttcctacaaaaactgcgcaggggcggggggaggcaggggcccgatttaagaactggaagaagaagagtatagtatatgctcatgttggtgggccaaatagcacccataacaaggctcagagaaactgtgaagcgttactaaatcaaaaacaacatattgaaaccatattgtcaaatcatacaagccaagatcggattgactatcggattcgcttaagtgcatcaatcagtgttgttagaattcttttgaagcaaggacttccatttcgtgggcatgatgaatttgaaaattcaaataatcgaggaaactttcttgaaattttggaatggttatgctgttataatgaagatataaaagctgtcacattgaaaaatgctcctgaaaatttgaagttaacatcacctgatattcataaggacattgtaagtgctatttcagttgaaattgtcaatacaattgctagtgaacttgttgattctttatttgccattcttgttgatgaatctcgagatatgtcctcaaaggagcaaatggccattgtactacggtatgtggatgatggaaaggtgattaagcgttttgtgggtattgaacatgttactaataccaatgctatcacactgaaggaagctattgatgattttttaagtagacatggattaagcatttcaagactgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

261

Amino Acids

29.26

Weight (kDa)

7.67

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
Acc16I TGCGCA 1 cut(s) 123
AccB7I CCANNNNNTGG 1 cut(s) 374
AccI GTMKAC 1 cut(s) 757
AciI CCGC 1 cut(s) 130
AcoI YGGCCR 1 cut(s) 639
AcsI RAATTY 6 cut(s) 74, 345, 386, 394, 423, 490
AcuI CTGAAG 1 cut(s) 749
AfaI GTAC 1 cut(s) 648
AfiI CCNNNNNNNGG 2 cut(s) 217, 374
AflII CTTAAG 1 cut(s) 319
AflIII ACRYGT 2 cut(s) 95, 700
AluBI AGCT 2 cut(s) 464, 737
AluI AGCT 2 cut(s) 464, 737
Ama87I CYCGRG 1 cut(s) 612
AoxI GGCC 3 cut(s) 144, 197, 639
ApaI GGGCCC 1 cut(s) 148
ApoI RAATTY 6 cut(s) 74, 345, 386, 394, 423, 490
ArsI GACNNNNNNTTYG 2 cut(s) 354, 386
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 3 cut(s) 144, 145, 197
AsuHPI GGTGA 2 cut(s) 498, 685
AvaI CYCGRG 1 cut(s) 612
BaeGI GKGCMC 2 cut(s) 41, 148
BalI TGGCCA 1 cut(s) 641
BanII GRGCYC 1 cut(s) 148
BccI CCATC 1 cut(s) 659
BfaI CTAG 1 cut(s) 567
BfrI CTTAAG 1 cut(s) 319
BmeT110I CYCGRG 1 cut(s) 612
BmgT120I GGNCC 3 cut(s) 144, 145, 197
BmiI GGNNCC 3 cut(s) 108, 145, 146
BmsI GCATC 1 cut(s) 335
Bsc4I CCNNNNNNNGG 2 cut(s) 217, 374
Bse1I ACTGG 2 cut(s) 108, 164
BseGI GGATG 2 cut(s) 39, 667
BseLI CCNNNNNNNGG 2 cut(s) 217, 374
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 2 cut(s) 108, 164
BseSI GKGCMC 2 cut(s) 41, 148
BshFI GGCC 3 cut(s) 146, 199, 641
BsiHKCI CYCGRG 1 cut(s) 612
BslI CCNNNNNNNGG 2 cut(s) 217, 374
BsnI GGCC 3 cut(s) 146, 199, 641
BsoBI CYCGRG 1 cut(s) 612
Bsp120I GGGCCC 1 cut(s) 144
Bsp1286I GDGCHC 2 cut(s) 41, 148
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 1 cut(s) 130
BspANI GGCC 3 cut(s) 146, 199, 641
BspCNI CTCAG 1 cut(s) 235
BspLI GGNNCC 3 cut(s) 108, 145, 146
BspTI CTTAAG 1 cut(s) 319
BsrI ACTGG 2 cut(s) 108, 164
BssMI GATC 1 cut(s) 295
Bst4CI ACNGT 3 cut(s) 233, 654, 783
Bst6I CTCTTC 1 cut(s) 164
BstAFI CTTAAG 1 cut(s) 319
BstDEI CTNAG 1 cut(s) 222
BstF5I GGATG 2 cut(s) 39, 667
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 1 cut(s) 298
BstMBI GATC 1 cut(s) 295
BstNSI RCATGY 2 cut(s) 99, 704
BstSLI GKGCMC 2 cut(s) 41, 148
BsuRI GGCC 3 cut(s) 146, 199, 641
BtsCI GGATG 2 cut(s) 39, 667
BtsIMutI CAGTG 2 cut(s) 340, 725
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 3 cut(s) 144, 145, 197
Csp6I GTAC 1 cut(s) 647
CviAII CATG 5 cut(s) 96, 188, 380, 701, 761
CviJI RGCY 8 cut(s) 56, 146, 199, 221, 291, 464, 641, 737
CviKI_1 RGCY 8 cut(s) 56, 146, 199, 221, 291, 464, 641, 737
CviQI GTAC 1 cut(s) 647
DdeI CTNAG 1 cut(s) 222
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 639
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco24I GRGCYC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 749
Eco88I CYCGRG 1 cut(s) 612
EcoO109I RGGNCCY 1 cut(s) 144
EcoRI GAATTC 1 cut(s) 345
EcoT38I GRGCYC 1 cut(s) 148
FaeI CATG 5 cut(s) 99, 191, 383, 704, 764
FatI CATG 5 cut(s) 95, 187, 379, 700, 760
FauI CCCGC 1 cut(s) 123
FblI GTMKAC 1 cut(s) 757
FokI GGATG 2 cut(s) 46, 674
FriOI GRGCYC 1 cut(s) 148
FspBI CTAG 1 cut(s) 567
FspI TGCGCA 1 cut(s) 123
GlaI GCGC 1 cut(s) 123
HaeIII GGCC 3 cut(s) 146, 199, 641
HhaI GCGC 1 cut(s) 124
Hin1II CATG 5 cut(s) 99, 191, 383, 704, 764
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HincII GTYRAC 2 cut(s) 101, 501
HindII GTYRAC 2 cut(s) 101, 501
HinfI GANTC 3 cut(s) 313, 581, 608
HpaI GTTAAC 1 cut(s) 501
HphI GGTGA 2 cut(s) 498, 685
Hpy166II GTNNAC 4 cut(s) 101, 501, 572, 758
Hpy188I TCNGA 5 cut(s) 73, 86, 225, 300, 312
Hpy188III TCNNGA 5 cut(s) 419, 485, 612, 614, 777
Hpy8I GTNNAC 4 cut(s) 101, 501, 572, 758
HpyAV CCTTC 1 cut(s) 724
HpyCH4III ACNGT 3 cut(s) 233, 654, 783
HpyCH4V TGCA 3 cut(s) 26, 44, 326
HpyF3I CTNAG 1 cut(s) 222
Hsp92II CATG 5 cut(s) 99, 191, 383, 704, 764
HspAI GCGC 1 cut(s) 122
KspAI GTTAAC 1 cut(s) 501
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 2 cut(s) 487, 631
LpnPI CCDG 7 cut(s) 54, 89, 110, 126, 145, 498, 522
LweI GCATC 1 cut(s) 335
MaeI CTAG 1 cut(s) 567
MaeIII GTNAC 3 cut(s) 240, 466, 703
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 4 cut(s) 175, 178, 181, 464
MfeI CAATTG 1 cut(s) 561
MhlI GDGCHC 2 cut(s) 41, 148
MlsI TGGCCA 1 cut(s) 641
MluCI AATT 9 cut(s) 45, 74, 345, 386, 394, 423, 490, 549, 561
MluNI TGGCCA 1 cut(s) 641
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 3 cut(s) 130, 401, 634
Mox20I TGGCCA 1 cut(s) 641
MscI TGGCCA 1 cut(s) 641
MseI TTAA 6 cut(s) 153, 320, 500, 678, 752, 767
MslI CAYNNNNRTG 1 cut(s) 192
Msp20I TGGCCA 1 cut(s) 641
MspCI CTTAAG 1 cut(s) 319
MunI CAATTG 1 cut(s) 561
NdeII GATC 1 cut(s) 295
NlaIII CATG 5 cut(s) 99, 191, 383, 704, 764
NlaIV GGNNCC 3 cut(s) 108, 145, 146
NmuCI GTSAC 1 cut(s) 466
NsbI TGCGCA 1 cut(s) 123
NspI RCATGY 2 cut(s) 99, 704
PaeR7I CTCGAG 1 cut(s) 612
PciI ACATGT 2 cut(s) 95, 700
PfeI GAWTC 3 cut(s) 313, 581, 608
PflMI CCANNNNNTGG 1 cut(s) 374
PscI ACATGT 2 cut(s) 95, 700
PsiI TTATAA 1 cut(s) 447
PspN4I GGNNCC 3 cut(s) 108, 145, 146
PspOMI GGGCCC 1 cut(s) 144
PspPI GGNCC 3 cut(s) 144, 145, 197
RsaI GTAC 1 cut(s) 648
RsaNI GTAC 1 cut(s) 647
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 6 cut(s) 153, 320, 500, 678, 752, 767
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 3 cut(s) 144, 145, 197
SduI GDGCHC 2 cut(s) 41, 148
SetI ASST 4 cut(s) 466, 511, 675, 739
SfaNI GCATC 1 cut(s) 335
Sfr274I CTCGAG 1 cut(s) 612
SlaI CTCGAG 1 cut(s) 612
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 2 cut(s) 319, 612
SmoI CTYRAG 2 cut(s) 319, 612
Sse9I AATT 9 cut(s) 45, 74, 345, 386, 394, 423, 490, 549, 561
SsiI CCGC 1 cut(s) 130
SspMI CTAG 1 cut(s) 567
TaaI ACNGT 3 cut(s) 233, 654, 783
TaqI TCGA 2 cut(s) 406, 613
TasI AATT 9 cut(s) 45, 74, 345, 386, 394, 423, 490, 549, 561
TatI WGTACW 1 cut(s) 646
TfiI GAWTC 3 cut(s) 313, 581, 608
Tru1I TTAA 6 cut(s) 153, 320, 500, 678, 752, 767
Tru9I TTAA 6 cut(s) 153, 320, 500, 678, 752, 767
TscAI CASTG 2 cut(s) 340, 732
TseFI GTSAC 1 cut(s) 466
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 4 cut(s) 399, 465, 506, 621
TspRI CASTG 2 cut(s) 340, 732
Van91I CCANNNNNTGG 1 cut(s) 374
Vha464I CTTAAG 1 cut(s) 319
XapI RAATTY 6 cut(s) 74, 345, 386, 394, 423, 490
XceI RCATGY 2 cut(s) 99, 704
XhoI CTCGAG 1 cut(s) 612
XmiI GTMKAC 1 cut(s) 757
XspI CTAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.