FvH4_5g27190

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000122
Physical Location & Seq
Forward (+)
18459892 .. 18466148
6257 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27190.t1

Sequence Viewer

Length: 1884 bp
ATGGTCGCTCTTGCCTCTCGCCGGTCACTCTTGCCTCTCGCAGTCTCGCTGGTCGCTCTTGCTGCGGCGCTCCTGGCCTCCTGCCGATGCCCTTCCCAGTCCGGCAGTGATTCCCTACTTCTTGACTTCTTCGGTTCTTCCTCAGCAACTGAAGAGCCATCTTCAGAGTCTCCTTTAGTTAGGTCTCAAAGGAATGAGTTTGATCCACATGGCAATGTCAATGCCATTGAACGTGATCCGGGCAAACGATGTCCTCTATGGAAGTATCATGTGAATCAACGTGAAGCCATTCGAAAAGCTTATGTTGCATTGGGTCCATGTCAACCTAAGTTGAAAAATTATCCTCTTTCAATTCATAGGTCTCAAAATCGTAAGTTTAACTTTGATTGGTTTGAAGGGCATCCATGGCTTGAGTACTCAGAGGATCAAGACAAGATATATTGTTTCCCTTGTTTTCTTTTTGATAAAGAAAACACTTCTAACCATGTATTTACTGTAGATGGGGTGAGAAATTGGAAGAGTAAGAATGTACTCACAGTACATATTGGGGGTATAGAGAGTCCACATAATGAAGCAATGGAGAAGTGGAACTTATTGAGAAATTTAGATACACAAATTGAGAGTGTTTTTGTTAAAAGAACAACAAAAGAGGTGGAGCATAATCGATTTAGGTTGAAGGCGGCAATAGAGGCTGCGAGACTTCTAGCAAACCAGGGACAAGCTTTTAGAGGCCATGATGAATCTGAAAGCTCTCTTAATGCTGGAAATTTTAGGCAAGTTAGAAAGTCTTTTGAAAGAATGGCTAGTGATGATGATAGGGTTGTATTGGAGAATGCTCCTGGAAATGCCAAGTACACCTCTCCACCTGTTCAAAAGGAGCTCTTGAATATTCTAGGTAATAGAGTGAGGCAAATGATTCGTGAAGAAGTTGGTGATGCCAAGTTTTGCATTCTTGTTGATGAAGCAGTAGATGCAGCTGGCAAGGAGCAAATGTCTATTGTTTTAAGGTTTGTTGATCGTTATGGCTTCATCCGAGAACGGTTCTTTAAGATAGTGAGTGTTCCTAATACAACCTCATTAACTCTTAAATTAGAGATAGTCAAAGTTCTTGGTATGTTCAATTTGCAAGTGGAAAATATGCGTGGTCAAGGATATGATGGAGCTAGTAACATGAGTGGTGTTTGGAATGGTTTACAAGCATTGTTTCTTGAGGATTGTCCATATGCATATTATGTTCATTGTTTTGCTCATCGTTTGCAACTAGCATTAAATGGTGCAGCTAAGGGTGTTCATGATACATATCGCTTCTTTTCTACTTTATTATTGGTTGTGAATTTTGTGGATTCATCTGCTAAGCGCAAAGGTGCGTTAAAAGCTGCTAGAGAGGATGAAATCCAAGATTTGATAGCTCTTGGCAATCTTCAAACAGGTCGTCCGAGTCAACAGAAGAATTTTATCACACATGAGCACCACTTCCGTGTAGAGGTATTCAATGCTGTACTTGACTTTCAATTAAGTGAGCTAAATAAGAGGTTCAATGAGAGATCTTGTGAACTCCTTACGCTCACTTCCACTTTGGATCCTCATGATAAGTTCAGCCTGTTTGAAACACAAAAGAATCTTTTCCTTTTTCTCCGCTCTCTCTTGACGCTTTCAAAGTCATCTCTCACAAAATTCGCCGCATTAAAGACTGATCTCTTTCGGTATTTGATCAAGATCAACAACAGCAAGCACTTGTTTTGTCTCTTTGCAGTTTGCGACCTCAAAAAATTGCTTGCATTTGTCAGAAACGCTGCTTCTCTAATCAGTTTCTCCTCAAGATCGCCAGCATCAGTGGATCATAATGGCGGTGTACACATCAATTTCAAGGCATCCAGCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

628

Amino Acids

71.03

Weight (kDa)

9.02

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 164 - 397 8.2e-52 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1638
AciI CCGC 5 cut(s) 65, 680, 1636, 1680, 1848
AclWI GGATC 6 cut(s) 197, 230, 432, 1574, 1587, 1845
AcsI RAATTY 5 cut(s) 601, 766, 1333, 1450, 1673
AcuI CTGAAG 2 cut(s) 147, 171
AfaI GTAC 6 cut(s) 416, 531, 540, 854, 1500, 1854
AfiI CCNNNNNNNGG 2 cut(s) 21, 1483
AjnI CCWGG 3 cut(s) 72, 711, 838
AleI CACNNNNGTG 1 cut(s) 1476
Alw21I GWGCWC 2 cut(s) 882, 1470
Alw26I GTCTC 6 cut(s) 49, 174, 189, 366, 691, 1748
AlwI GGATC 6 cut(s) 197, 230, 432, 1574, 1587, 1845
AlwNI CAGNNNCTG 1 cut(s) 149
AoxI GGCC 2 cut(s) 75, 730
ApeKI GCWGC 6 cut(s) 62, 692, 974, 1277, 1376, 1793
ApoI RAATTY 5 cut(s) 601, 766, 1333, 1450, 1673
ArsI GACNNNNNNTTYG 2 cut(s) 1417, 1449
Asp700I GAANNNNTTC 2 cut(s) 288, 1622
AspLEI GCGC 2 cut(s) 70, 1359
AspS9I GGNCC 1 cut(s) 314
AsuC2I CCSGG 1 cut(s) 240
AsuHPI GGTGA 2 cut(s) 517, 944
AsuII TTCGAA 1 cut(s) 292
AvaII GGWCC 1 cut(s) 314
BamHI GGATCC 1 cut(s) 1579
BanII GRGCYC 1 cut(s) 882
Bbv12I GWGCWC 2 cut(s) 882, 1470
BbvCI CCTCAGC 1 cut(s) 142
BbvI GCAGC 6 cut(s) 49, 679, 986, 1289, 1363, 1780
BccI CCATC 3 cut(s) 166, 494, 1151
BcgI CGANNNNNNTGC 2 cut(s) 899, 933
BciT130I CCWGG 3 cut(s) 74, 713, 840
BclI TGATCA 1 cut(s) 1710
BcnI CCSGG 1 cut(s) 240
BcoDI GTCTC 6 cut(s) 49, 174, 189, 366, 691, 1748
BfaI CTAG 6 cut(s) 704, 804, 893, 1164, 1262, 1380
BfmI CTRYAG 1 cut(s) 495
BfoI RGCGCY 1 cut(s) 71
BglII AGATCT 1 cut(s) 1544
BisI GCNGC 9 cut(s) 63, 66, 681, 693, 975, 1278, 1377, 1680, 1794
BlpI GCTNAGC 1 cut(s) 1353
BlsI GCNGC 9 cut(s) 64, 67, 682, 694, 976, 1279, 1378, 1681, 1795
BmcAI AGTACT 1 cut(s) 416
Bme1390I CCNGG 4 cut(s) 74, 240, 713, 840
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 2 cut(s) 315, 1581
BmrFI CCNGG 4 cut(s) 74, 240, 713, 840
BmrI ACTGGG 1 cut(s) 91
BmsI GCATC 6 cut(s) 77, 409, 925, 961, 1838, 1880
BmuI ACTGGG 1 cut(s) 91
Bpu10I CCTNAGC 2 cut(s) 142, 1281
Bpu1102I GCTNAGC 1 cut(s) 1353
Bpu14I TTCGAA 1 cut(s) 292
BpuEI CTTGAG 3 cut(s) 431, 1229, 1801
BpuMI CCSGG 1 cut(s) 240
Bsa29I ATCGAT 1 cut(s) 664
BsaBI GATNNNNATC 2 cut(s) 1299, 1715
BsaI GGTCTC 2 cut(s) 189, 366
BsaJI CCNNGG 2 cut(s) 404, 712
BsaXI ACNNNNNCTCC 2 cut(s) 977, 1007
Bsc4I CCNNNNNNNGG 2 cut(s) 21, 1483
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 1 cut(s) 97
Bse3DI GCAATG 2 cut(s) 220, 582
Bse8I GATNNNNATC 2 cut(s) 1299, 1715
BseBI CCWGG 3 cut(s) 74, 713, 840
BseCI ATCGAT 1 cut(s) 664
BseDI CCNNGG 2 cut(s) 404, 712
BseGI GGATG 4 cut(s) 400, 1029, 1393, 1871
BseJI GATNNNNATC 2 cut(s) 1299, 1715
BseLI CCNNNNNNNGG 2 cut(s) 21, 1483
BseMI GCAATG 2 cut(s) 220, 582
BseMII CTCAG 2 cut(s) 156, 432
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 1 cut(s) 1804
BseXI GCAGC 6 cut(s) 49, 679, 986, 1289, 1363, 1780
BsgI GTGCAG 1 cut(s) 1296
BshFI GGCC 2 cut(s) 77, 732
BshVI ATCGAT 1 cut(s) 664
BsiHKAI GWGCWC 2 cut(s) 882, 1470
BsiSI CCGG 3 cut(s) 22, 102, 239
BslFI GGGAC 1 cut(s) 729
BslI CCNNNNNNNGG 2 cut(s) 21, 1483
BsmAI GTCTC 6 cut(s) 49, 174, 189, 366, 691, 1748
BsmFI GGGAC 1 cut(s) 729
BsmI GAATGC 2 cut(s) 838, 948
BsnI GGCC 2 cut(s) 77, 732
Bso31I GGTCTC 2 cut(s) 189, 366
Bsp119I TTCGAA 1 cut(s) 292
Bsp1286I GDGCHC 2 cut(s) 882, 1470
Bsp1407I TGTACA 1 cut(s) 1852
Bsp1720I GCTNAGC 1 cut(s) 1353
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 5 cut(s) 65, 680, 1636, 1680, 1848
BspANI GGCC 2 cut(s) 77, 732
BspCNI CTCAG 2 cut(s) 155, 431
BspDI ATCGAT 1 cut(s) 664
BspHI TCATGA 2 cut(s) 1291, 1585
BspLI GGNNCC 2 cut(s) 315, 1581
BspPI GGATC 6 cut(s) 197, 230, 432, 1574, 1587, 1845
BspQI GCTCTTC 1 cut(s) 147
BspT104I TTCGAA 1 cut(s) 292
BspTNI GGTCTC 2 cut(s) 189, 366
BsrBI CCGCTC 1 cut(s) 1638
BsrDI GCAATG 2 cut(s) 220, 582
BsrFI RCCGGY 1 cut(s) 21
BsrGI TGTACA 1 cut(s) 1852
BsrI ACTGG 1 cut(s) 97
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 404, 712
BssT1I CCWWGG 1 cut(s) 404
Bst2UI CCWGG 3 cut(s) 74, 713, 840
Bst4CI ACNGT 3 cut(s) 496, 538, 1041
Bst6I CTCTTC 2 cut(s) 147, 512
BstAPI GCANNNNNTGC 1 cut(s) 971
BstAUI TGTACA 1 cut(s) 1852
BstBI TTCGAA 1 cut(s) 292
BstC8I GCNNGC 4 cut(s) 979, 1730, 1776, 1827
BstDEI CTNAG 5 cut(s) 142, 327, 418, 1281, 1353
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 4 cut(s) 400, 1029, 1393, 1871
BstH2I RGCGCY 1 cut(s) 71
BstHHI GCGC 2 cut(s) 70, 1359
BstMAI GTCTC 6 cut(s) 49, 174, 189, 366, 691, 1748
BstMWI GCNNNNNNNGC 7 cut(s) 62, 74, 305, 406, 689, 971, 1373
BstNI CCWGG 3 cut(s) 74, 713, 840
BstSCI CCNGG 4 cut(s) 72, 238, 711, 838
BstSFI CTRYAG 1 cut(s) 495
BstV1I GCAGC 6 cut(s) 49, 679, 986, 1289, 1363, 1780
BstX2I RGATCY 2 cut(s) 1544, 1579
BstYI RGATCY 2 cut(s) 1544, 1579
Bsu15I ATCGAT 1 cut(s) 664
BsuRI GGCC 2 cut(s) 77, 732
BsuTUI ATCGAT 1 cut(s) 664
BtgI CCRYGG 1 cut(s) 404
BtsCI GGATG 4 cut(s) 400, 1029, 1393, 1871
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 2 cut(s) 112, 1839
Cac8I GCNNGC 4 cut(s) 979, 1730, 1776, 1827
CaiI CAGNNNCTG 1 cut(s) 149
CciI TCATGA 2 cut(s) 1291, 1585
CfoI GCGC 2 cut(s) 70, 1359
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 1 cut(s) 314
ClaI ATCGAT 1 cut(s) 664
CseI GACGC 1 cut(s) 1657
Csp6I GTAC 6 cut(s) 415, 530, 539, 853, 1499, 1853
CspCI CAANNNNNGTGG 2 cut(s) 633, 668
CviQI GTAC 6 cut(s) 415, 530, 539, 853, 1499, 1853
DdeI CTNAG 5 cut(s) 142, 327, 418, 1281, 1353
Eam1104I CTCTTC 2 cut(s) 147, 512
EarI CTCTTC 2 cut(s) 147, 512
Ecl136II GAGCTC 1 cut(s) 880
Eco130I CCWWGG 1 cut(s) 404
Eco24I GRGCYC 1 cut(s) 882
Eco31I GGTCTC 2 cut(s) 189, 366
Eco47I GGWCC 1 cut(s) 314
Eco53kI GAGCTC 1 cut(s) 880
Eco57I CTGAAG 2 cut(s) 147, 171
EcoICRI GAGCTC 1 cut(s) 880
EcoRII CCWGG 3 cut(s) 72, 711, 838
EcoT14I CCWWGG 1 cut(s) 404
EcoT22I ATGCAT 1 cut(s) 1228
EcoT38I GRGCYC 1 cut(s) 882
ErhI CCWWGG 1 cut(s) 404
FalI AAGNNNNNCTT 6 cut(s) 365, 397, 575, 607, 866, 898
FaqI GGGAC 1 cut(s) 729
FauNDI CATATG 1 cut(s) 1222
FbaI TGATCA 1 cut(s) 1710
Fnu4HI GCNGC 9 cut(s) 63, 66, 681, 693, 975, 1278, 1377, 1680, 1794
FokI GGATG 4 cut(s) 387, 1016, 1400, 1858
FriOI GRGCYC 1 cut(s) 882
Fsp4HI GCNGC 9 cut(s) 63, 66, 681, 693, 975, 1278, 1377, 1680, 1794
FspBI CTAG 6 cut(s) 704, 804, 893, 1164, 1262, 1380
GlaI GCGC 2 cut(s) 69, 1358
GluI GCNGC 9 cut(s) 63, 66, 681, 693, 975, 1278, 1377, 1680, 1794
HaeII RGCGCY 1 cut(s) 71
HaeIII GGCC 2 cut(s) 77, 732
HapII CCGG 3 cut(s) 22, 102, 239
HgaI GACGC 1 cut(s) 1657
HhaI GCGC 2 cut(s) 70, 1359
Hin6I GCGC 2 cut(s) 68, 1357
HinP1I GCGC 2 cut(s) 68, 1357
HincII GTYRAC 2 cut(s) 323, 1442
HindII GTYRAC 2 cut(s) 323, 1442
HindIII AAGCTT 2 cut(s) 297, 720
HinfI GANTC 9 cut(s) 110, 167, 274, 559, 740, 916, 1343, 1438, 1618
HpaII CCGG 3 cut(s) 22, 102, 239
HphI GGTGA 2 cut(s) 517, 944
Hpy166II GTNNAC 8 cut(s) 323, 563, 855, 1193, 1442, 1553, 1853, 1855
Hpy188I TCNGA 6 cut(s) 166, 421, 745, 1034, 1437, 1787
Hpy8I GTNNAC 8 cut(s) 323, 563, 855, 1193, 1442, 1553, 1853, 1855
HpyAV CCTTC 3 cut(s) 102, 389, 670
HpyCH4III ACNGT 3 cut(s) 496, 538, 1041
HpyCH4IV ACGT 2 cut(s) 232, 280
HpyCH4V TGCA 9 cut(s) 308, 948, 974, 1126, 1226, 1258, 1277, 1751, 1778
HpyF10VI GCNNNNNNNGC 7 cut(s) 62, 74, 305, 406, 689, 971, 1373
HpyF3I CTNAG 5 cut(s) 142, 327, 418, 1281, 1353
HpySE526I ACGT 2 cut(s) 232, 280
HspAI GCGC 2 cut(s) 68, 1357
Ksp22I TGATCA 1 cut(s) 1710
LguI GCTCTTC 1 cut(s) 147
LmnI GCTCC 6 cut(s) 75, 655, 841, 877, 985, 1160
Lsp1109I GCAGC 6 cut(s) 49, 679, 986, 1289, 1363, 1780
LweI GCATC 6 cut(s) 77, 409, 925, 961, 1838, 1880
MaeI CTAG 6 cut(s) 704, 804, 893, 1164, 1262, 1380
MaeII ACGT 2 cut(s) 232, 280
MaeIII GTNAC 2 cut(s) 24, 1166
MbiI CCGCTC 1 cut(s) 1638
MboII GAAGA 8 cut(s) 121, 129, 153, 164, 529, 935, 1412, 1459
MflI RGATCY 2 cut(s) 1544, 1579
MhlI GDGCHC 2 cut(s) 882, 1470
MlyI GAGTC 3 cut(s) 176, 568, 1447
Mph1103I ATGCAT 1 cut(s) 1228
MroXI GAANNNNTTC 2 cut(s) 288, 1622
MslI CAYNNNNRTG 2 cut(s) 213, 1476
MspA1I CMGCKG 1 cut(s) 977
MspI CCGG 3 cut(s) 22, 102, 239
MspR9I CCNGG 4 cut(s) 74, 240, 713, 840
Mva1269I GAATGC 2 cut(s) 838, 948
MvaI CCWGG 3 cut(s) 74, 713, 840
MwoI GCNNNNNNNGC 7 cut(s) 62, 74, 305, 406, 689, 971, 1373
NciI CCSGG 1 cut(s) 240
NcoI CCATGG 1 cut(s) 404
NdeI CATATG 1 cut(s) 1222
NlaIV GGNNCC 2 cut(s) 315, 1581
NmuCI GTSAC 1 cut(s) 24
NsiI ATGCAT 1 cut(s) 1228
NspV TTCGAA 1 cut(s) 292
OliI CACNNNNGTG 1 cut(s) 1476
PagI TCATGA 2 cut(s) 1291, 1585
PciSI GCTCTTC 1 cut(s) 147
PctI GAATGC 2 cut(s) 838, 948
PdmI GAANNNNTTC 2 cut(s) 288, 1622
PfeI GAWTC 6 cut(s) 110, 274, 740, 916, 1343, 1618
PfoI TCCNGGA 1 cut(s) 838
PkrI GCNGC 9 cut(s) 64, 67, 682, 694, 976, 1279, 1378, 1681, 1795
PleI GAGTC 3 cut(s) 175, 567, 1446
PpsI GAGTC 3 cut(s) 175, 567, 1446
Psp124BI GAGCTC 1 cut(s) 882
Psp6I CCWGG 3 cut(s) 72, 711, 838
PspGI CCWGG 3 cut(s) 72, 711, 838
PspN4I GGNNCC 2 cut(s) 315, 1581
PspPI GGNCC 1 cut(s) 314
PstNI CAGNNNCTG 1 cut(s) 149
PsuI RGATCY 2 cut(s) 1544, 1579
PvuII CAGCTG 1 cut(s) 977
RsaI GTAC 6 cut(s) 416, 531, 540, 854, 1500, 1854
RsaNI GTAC 6 cut(s) 415, 530, 539, 853, 1499, 1853
RseI CAYNNNNRTG 2 cut(s) 213, 1476
SacI GAGCTC 1 cut(s) 882
SapI GCTCTTC 1 cut(s) 147
SatI GCNGC 9 cut(s) 63, 66, 681, 693, 975, 1278, 1377, 1680, 1794
Sau96I GGNCC 1 cut(s) 314
ScaI AGTACT 1 cut(s) 416
SchI GAGTC 3 cut(s) 176, 568, 1447
ScrFI CCNGG 4 cut(s) 74, 240, 713, 840
SduI GDGCHC 2 cut(s) 882, 1470
SfaNI GCATC 6 cut(s) 77, 409, 925, 961, 1838, 1880
SfcI CTRYAG 1 cut(s) 495
SfuI TTCGAA 1 cut(s) 292
SinI GGWCC 1 cut(s) 314
SmiMI CAYNNNNRTG 2 cut(s) 213, 1476
SmlI CTYRAG 3 cut(s) 410, 1208, 1816
SmoI CTYRAG 3 cut(s) 410, 1208, 1816
SsiI CCGC 5 cut(s) 65, 680, 1636, 1680, 1848
SspI AATATT 1 cut(s) 889
SspMI CTAG 6 cut(s) 704, 804, 893, 1164, 1262, 1380
SstI GAGCTC 1 cut(s) 882
StyD4I CCNGG 4 cut(s) 72, 238, 711, 838
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 3 cut(s) 496, 538, 1041
TaiI ACGT 2 cut(s) 235, 283
TaqI TCGA 2 cut(s) 292, 664
TatI WGTACW 6 cut(s) 414, 529, 538, 852, 1498, 1852
TauI GCSGC 3 cut(s) 68, 683, 1682
TfiI GAWTC 6 cut(s) 110, 274, 740, 916, 1343, 1618
TscAI CASTG 2 cut(s) 112, 1839
TseFI GTSAC 1 cut(s) 24
TseI GCWGC 6 cut(s) 62, 692, 974, 1277, 1376, 1793
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 9 cut(s) 344, 585, 753, 975, 1018, 1226, 1280, 1335, 1404
TspGWI ACGGA 1 cut(s) 1466
TspRI CASTG 2 cut(s) 112, 1839
VpaK11BI GGWCC 1 cut(s) 314
XapI RAATTY 5 cut(s) 601, 766, 1333, 1450, 1673
XmnI GAANNNNTTC 2 cut(s) 288, 1622
XspI CTAG 6 cut(s) 704, 804, 893, 1164, 1262, 1380
ZrmI AGTACT 1 cut(s) 416
Zsp2I ATGCAT 1 cut(s) 1228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.