Rmu_sc0000446.1_g000054

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000446.1
OG0000122
Physical Location & Seq
Reverse (-)
259516 .. 260256
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000446.1_g000054.1.cds

Sequence Viewer

Length: 741 bp
atgcgtggtgagtggaatgggttgcaagcactatttttgcaaaagtgtccatatgcatactatgtacattgttttgttcatcgcctacaactagctttaaatgctgcagctaaagatgtgggtgttgtctatttattctttcaaatgctgactagtatcattaatgttgttgactcatctgctaagcatgtttctgagttaaaatctattcaagaagttgaagttgtggaacaaattgctgctggcgaacttgaaactagaaagggagctaatcagacatgcaatttgcaaagagctggagctacaaggtggagtttaaggtattattctatcgagaacttgatgaaattgtataactcaactagttcagttttgaaaaacatgatagatagtggactcaatggaaaaatatgtggagaggctttaggtgcttctaaagctctaagatcatttgactttgtgttttgcttattgttgttggaccaaactatgggaatcacaaatgctctttgtaagtcgctgcaagaacagtctcaagagatcataaatgttatgaatctagtttctagtatgaagggttgtcttaaaaagttgagagaatatggttgggttgatttcttcgctagtgttgtatcgttttgtgacacacatacaattgatcctccagattttagtgctcgccatatggaaggtactggtcgtctttctcaacaacaaaattgtgttactattgagcattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

246

Amino Acids

27.56

Weight (kDa)

6.98

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 490
AclWI GGATC 1 cut(s) 653
AfaI GTAC 2 cut(s) 66, 694
AfiI CCNNNNNNNGG 1 cut(s) 490
AgsI TTSAA 5 cut(s) 143, 212, 221, 254, 376
AhlI ACTAGT 2 cut(s) 152, 362
AluBI AGCT 6 cut(s) 95, 110, 269, 296, 302, 440
AluI AGCT 6 cut(s) 95, 110, 269, 296, 302, 440
Alw21I GWGCWC 1 cut(s) 679
Alw26I GTCTC 1 cut(s) 537
AlwI GGATC 1 cut(s) 653
ApeKI GCWGC 4 cut(s) 104, 107, 239, 520
ArsI GACNNNNNNTTYG 2 cut(s) 268, 300
AseI ATTAAT 1 cut(s) 162
AspS9I GGNCC 1 cut(s) 481
AsuHPI GGTGA 1 cut(s) 20
AvaII GGWCC 1 cut(s) 481
Bbv12I GWGCWC 1 cut(s) 679
BbvI GCAGC 4 cut(s) 91, 119, 226, 507
BcoDI GTCTC 1 cut(s) 537
BcuI ACTAGT 2 cut(s) 152, 362
BfaI CTAG 7 cut(s) 92, 153, 258, 363, 560, 567, 624
BfmI CTRYAG 1 cut(s) 105
BisI GCNGC 4 cut(s) 105, 108, 240, 521
BlpI GCTNAGC 1 cut(s) 183
BlsI GCNGC 4 cut(s) 106, 109, 241, 522
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 1 cut(s) 481
BpmI CTGGAG 2 cut(s) 318, 648
Bpu1102I GCTNAGC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 519
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse1I ACTGG 1 cut(s) 700
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 1 cut(s) 700
BseXI GCAGC 4 cut(s) 91, 119, 226, 507
BsiHKAI GWGCWC 1 cut(s) 679
BslI CCNNNNNNNGG 1 cut(s) 490
BsmAI GTCTC 1 cut(s) 537
Bsp1286I GDGCHC 1 cut(s) 679
Bsp1407I TGTACA 1 cut(s) 64
Bsp143I GATC 3 cut(s) 446, 540, 658
Bsp1720I GCTNAGC 1 cut(s) 183
BspCNI CTCAG 1 cut(s) 187
BspMAI CTGCAG 1 cut(s) 109
BspPI GGATC 1 cut(s) 653
BsrGI TGTACA 1 cut(s) 64
BsrI ACTGG 1 cut(s) 700
BssMI GATC 3 cut(s) 446, 540, 658
Bst4CI ACNGT 1 cut(s) 531
BstAUI TGTACA 1 cut(s) 64
BstC8I GCNNGC 3 cut(s) 27, 244, 679
BstDEI CTNAG 3 cut(s) 183, 195, 443
BstKTI GATC 3 cut(s) 449, 543, 661
BstMAI GTCTC 1 cut(s) 537
BstMBI GATC 3 cut(s) 446, 540, 658
BstMWI GCNNNNNNNGC 3 cut(s) 101, 428, 437
BstNSI RCATGY 2 cut(s) 191, 282
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 4 cut(s) 91, 119, 226, 507
BtgZI GCGATG 1 cut(s) 65
Cac8I GCNNGC 3 cut(s) 27, 244, 679
Cfr13I GGNCC 1 cut(s) 481
Csp6I GTAC 2 cut(s) 65, 693
CviAII CATG 3 cut(s) 188, 279, 382
CviJI RGCY 7 cut(s) 95, 110, 269, 296, 302, 422, 440
CviKI_1 RGCY 7 cut(s) 95, 110, 269, 296, 302, 422, 440
CviQI GTAC 2 cut(s) 65, 693
DdeI CTNAG 3 cut(s) 183, 195, 443
DpnI GATC 3 cut(s) 448, 542, 660
DpnII GATC 3 cut(s) 446, 540, 658
DraI TTTAAA 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 481
EcoT22I ATGCAT 1 cut(s) 58
FaeI CATG 3 cut(s) 191, 282, 385
FatI CATG 3 cut(s) 187, 278, 381
FauNDI CATATG 2 cut(s) 52, 684
Fnu4HI GCNGC 4 cut(s) 105, 108, 240, 521
Fsp4HI GCNGC 4 cut(s) 105, 108, 240, 521
FspBI CTAG 7 cut(s) 92, 153, 258, 363, 560, 567, 624
GluI GCNGC 4 cut(s) 105, 108, 240, 521
GsuI CTGGAG 2 cut(s) 318, 648
Hin1II CATG 3 cut(s) 191, 282, 385
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 4 cut(s) 173, 396, 495, 556
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 2 cut(s) 172, 395
Hpy188I TCNGA 2 cut(s) 196, 276
Hpy188III TCNNGA 4 cut(s) 212, 334, 536, 665
Hpy8I GTNNAC 2 cut(s) 172, 395
HpyAV CCTTC 2 cut(s) 568, 683
HpyCH4III ACNGT 1 cut(s) 531
HpyCH4V TGCA 7 cut(s) 25, 40, 56, 107, 282, 289, 523
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 428, 437
HpyF3I CTNAG 3 cut(s) 183, 195, 443
Hsp92II CATG 3 cut(s) 191, 282, 385
Kzo9I GATC 3 cut(s) 446, 540, 658
LmnI GCTCC 2 cut(s) 266, 299
LpnPI CCDG 4 cut(s) 228, 282, 678, 681
Lsp1109I GCAGC 4 cut(s) 91, 119, 226, 507
MaeI CTAG 7 cut(s) 92, 153, 258, 363, 560, 567, 624
MaeIII GTNAC 2 cut(s) 641, 724
MalI GATC 3 cut(s) 448, 542, 660
MboI GATC 3 cut(s) 446, 540, 658
MboII GAAGA 1 cut(s) 610
MfeI CAATTG 1 cut(s) 654
MhlI GDGCHC 1 cut(s) 679
MluCI AATT 5 cut(s) 234, 283, 347, 654, 718
MlyI GAGTC 2 cut(s) 167, 390
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 2 cut(s) 412, 672
Mph1103I ATGCAT 1 cut(s) 58
MseI TTAA 5 cut(s) 98, 162, 200, 317, 585
MunI CAATTG 1 cut(s) 654
MwoI GCNNNNNNNGC 3 cut(s) 101, 428, 437
NdeI CATATG 2 cut(s) 52, 684
NdeII GATC 3 cut(s) 446, 540, 658
NlaIII CATG 3 cut(s) 191, 282, 385
NmuCI GTSAC 1 cut(s) 641
NsiI ATGCAT 1 cut(s) 58
NspI RCATGY 2 cut(s) 191, 282
PfeI GAWTC 2 cut(s) 495, 556
PflMI CCANNNNNTGG 1 cut(s) 490
PkrI GCNGC 4 cut(s) 106, 109, 241, 522
PleI GAGTC 2 cut(s) 167, 390
PpsI GAGTC 2 cut(s) 167, 390
PshBI ATTAAT 1 cut(s) 162
PspPI GGNCC 1 cut(s) 481
PstI CTGCAG 1 cut(s) 109
RsaI GTAC 2 cut(s) 66, 694
RsaNI GTAC 2 cut(s) 65, 693
SaqAI TTAA 5 cut(s) 98, 162, 200, 317, 585
SatI GCNGC 4 cut(s) 105, 108, 240, 521
Sau3AI GATC 3 cut(s) 446, 540, 658
Sau96I GGNCC 1 cut(s) 481
SchI GAGTC 2 cut(s) 167, 390
SduI GDGCHC 1 cut(s) 679
SfcI CTRYAG 1 cut(s) 105
SinI GGWCC 1 cut(s) 481
SmlI CTYRAG 1 cut(s) 534
SmoI CTYRAG 1 cut(s) 534
SpeI ACTAGT 2 cut(s) 152, 362
Sse9I AATT 5 cut(s) 234, 283, 347, 654, 718
SspMI CTAG 7 cut(s) 92, 153, 258, 363, 560, 567, 624
TaaI ACNGT 1 cut(s) 531
TaqI TCGA 1 cut(s) 333
TasI AATT 5 cut(s) 234, 283, 347, 654, 718
TatI WGTACW 1 cut(s) 64
TfiI GAWTC 2 cut(s) 495, 556
Tru1I TTAA 5 cut(s) 98, 162, 200, 317, 585
Tru9I TTAA 5 cut(s) 98, 162, 200, 317, 585
TseFI GTSAC 1 cut(s) 641
TseI GCWGC 4 cut(s) 104, 107, 239, 520
Tsp45I GTSAC 1 cut(s) 641
TspDTI ATGAA 4 cut(s) 68, 359, 569, 587
Van91I CCANNNNNTGG 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 481
VspI ATTAAT 1 cut(s) 162
XceI RCATGY 2 cut(s) 191, 282
XspI CTAG 7 cut(s) 92, 153, 258, 363, 560, 567, 624
Zsp2I ATGCAT 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.