Rmu_sc0002052.1_g000008

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002052.1
OG0000122
Physical Location & Seq
Reverse (-)
27987 .. 28502
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002052.1_g000008.1.cds

Sequence Viewer

Length: 516 bp
atgaacataattgatgaggggaagagtcctcaagcaggagatgcagattcagcttatgagtcaatgacatcctatcaatttgtcttcatcttacatctcatggaagaaattatggagaatactaatgaactttgtctagctctgcaaagtcaatctcaagacattttgaatgccatgagtcttgtttcctctactaaagcattcattcaaaagttgagagataatggatgggatactttgtttgccaaggtaaattctttttgtgaggcacgtaacatagatatcctagatatgaatgctcgttatgttggaagaggaggtcgagctcgtcaccaacaagatgactggacagttcaacattattaccaggtagatatattttatgctgctatagattctcagttgcaagaattaaataaccggtttaatgagcatgttgtagagctacttattcttagttcagctttggatcttagtgaaataagcaagtgtttcaagattgatgccatatgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

171

Amino Acids

19.53

Weight (kDa)

4.56

Isoelectric Point (pI)

54.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 477
AcsI RAATTY 1 cut(s) 253
AfiI CCNNNNNNNGG 1 cut(s) 35
AgeI ACCGGT 1 cut(s) 420
AgsI TTSAA 4 cut(s) 169, 209, 356, 496
AjnI CCWGG 1 cut(s) 366
AluBI AGCT 5 cut(s) 53, 140, 326, 445, 464
AluI AGCT 5 cut(s) 53, 140, 326, 445, 464
Alw21I GWGCWC 1 cut(s) 328
AlwI GGATC 1 cut(s) 477
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 253
AsiGI ACCGGT 1 cut(s) 420
AsuHPI GGTGA 1 cut(s) 323
BanII GRGCYC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 1 cut(s) 373
BccI CCATC 1 cut(s) 222
BciT130I CCWGG 1 cut(s) 368
BciVI GTATCC 1 cut(s) 226
BfaI CTAG 2 cut(s) 137, 287
BfmI CTRYAG 1 cut(s) 390
BfuI GTATCC 1 cut(s) 226
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 368
BmrFI CCNGG 1 cut(s) 368
BmsI GCATC 2 cut(s) 31, 493
BpiI GAAGAC 1 cut(s) 76
BpuEI CTTGAG 2 cut(s) 15, 141
BsaAI YACGTR 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 246
BsaWI WCCGGW 1 cut(s) 420
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 1 cut(s) 420
Bse1I ACTGG 1 cut(s) 350
BseBI CCWGG 1 cut(s) 368
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 2 cut(s) 68, 233
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 413
BseNI ACTGG 1 cut(s) 350
BseRI GAGGAG 1 cut(s) 330
BseXI GCAGC 1 cut(s) 373
BshTI ACCGGT 1 cut(s) 420
BsiHKAI GWGCWC 1 cut(s) 328
BsiSI CCGG 1 cut(s) 421
BslI CCNNNNNNNGG 1 cut(s) 35
BsmI GAATGC 3 cut(s) 175, 200, 301
Bsp1286I GDGCHC 1 cut(s) 328
Bsp143I GATC 1 cut(s) 469
BspCNI CTCAG 1 cut(s) 412
BspPI GGATC 1 cut(s) 477
BsrFI RCCGGY 1 cut(s) 420
BsrI ACTGG 1 cut(s) 350
BssAI RCCGGY 1 cut(s) 420
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 1 cut(s) 469
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 368
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 2 cut(s) 17, 307
BstAPI GCANNNNNTGC 1 cut(s) 41
BstBAI YACGTR 1 cut(s) 272
BstDEI CTNAG 3 cut(s) 399, 455, 473
BstENI CCTNNNNNAGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 68, 233
BstKTI GATC 1 cut(s) 472
BstMBI GATC 1 cut(s) 469
BstMWI GCNNNNNNNGC 2 cut(s) 41, 50
BstNI CCWGG 1 cut(s) 368
BstNSI RCATGY 1 cut(s) 437
BstSCI CCNGG 1 cut(s) 366
BstSFI CTRYAG 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 373
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 469
BstYI RGATCY 1 cut(s) 469
BsuI GTATCC 1 cut(s) 226
BtsCI GGATG 2 cut(s) 68, 233
Cfr10I RCCGGY 1 cut(s) 420
CsiI ACCWGGT 1 cut(s) 366
CspAI ACCGGT 1 cut(s) 420
CviAII CATG 3 cut(s) 100, 175, 434
CviJI RGCY 5 cut(s) 53, 140, 326, 445, 464
CviKI_1 RGCY 5 cut(s) 53, 140, 326, 445, 464
DdeI CTNAG 3 cut(s) 399, 455, 473
DpnI GATC 1 cut(s) 471
DpnII GATC 1 cut(s) 469
Eam1104I CTCTTC 2 cut(s) 17, 307
EarI CTCTTC 2 cut(s) 17, 307
Ecl136II GAGCTC 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 328
Eco32I GATATC 1 cut(s) 283
Eco53kI GAGCTC 1 cut(s) 326
EcoICRI GAGCTC 1 cut(s) 326
EcoNI CCTNNNNNAGG 1 cut(s) 33
EcoRII CCWGG 1 cut(s) 366
EcoRV GATATC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 3 cut(s) 103, 178, 437
FatI CATG 3 cut(s) 99, 174, 433
FauNDI CATATG 1 cut(s) 509
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 2 cut(s) 55, 240
FriOI GRGCYC 1 cut(s) 328
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 2 cut(s) 137, 287
GluI GCNGC 1 cut(s) 387
HapII CCGG 1 cut(s) 421
Hin1II CATG 3 cut(s) 103, 178, 437
HinfI GANTC 5 cut(s) 25, 47, 59, 178, 395
HpaII CCGG 1 cut(s) 421
HphI GGTGA 1 cut(s) 323
Hpy188III TCNNGA 2 cut(s) 158, 496
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 3 cut(s) 44, 145, 406
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 50
HpyF3I CTNAG 3 cut(s) 399, 455, 473
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 3 cut(s) 103, 178, 437
Kzo9I GATC 1 cut(s) 469
LpnPI CCDG 5 cut(s) 21, 331, 353, 380, 434
Lsp1109I GCAGC 1 cut(s) 373
LweI GCATC 2 cut(s) 31, 493
MabI ACCWGGT 1 cut(s) 366
MaeI CTAG 2 cut(s) 137, 287
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 2 cut(s) 272, 329
MalI GATC 1 cut(s) 471
MboI GATC 1 cut(s) 469
MboII GAAGA 4 cut(s) 34, 76, 116, 324
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 1 cut(s) 328
MluCI AATT 5 cut(s) 9, 77, 108, 253, 410
MlyI GAGTC 3 cut(s) 34, 68, 187
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 6 cut(s) 10, 39, 199, 259, 308, 311
MseI TTAA 2 cut(s) 413, 426
MspI CCGG 1 cut(s) 421
MspR9I CCNGG 1 cut(s) 368
Mva1269I GAATGC 3 cut(s) 175, 200, 301
MvaI CCWGG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 41, 50
NdeI CATATG 1 cut(s) 509
NdeII GATC 1 cut(s) 469
NlaIII CATG 3 cut(s) 103, 178, 437
NmuCI GTSAC 1 cut(s) 329
NspI RCATGY 1 cut(s) 437
PctI GAATGC 3 cut(s) 175, 200, 301
PfeI GAWTC 2 cut(s) 47, 395
PinAI ACCGGT 1 cut(s) 420
PkrI GCNGC 1 cut(s) 388
PleI GAGTC 3 cut(s) 33, 67, 186
PpsI GAGTC 3 cut(s) 33, 67, 186
Ppu21I YACGTR 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 328
Psp6I CCWGG 1 cut(s) 366
PspGI CCWGG 1 cut(s) 366
PsuI RGATCY 1 cut(s) 469
SacI GAGCTC 1 cut(s) 328
SaqAI TTAA 2 cut(s) 413, 426
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 1 cut(s) 469
SchI GAGTC 3 cut(s) 34, 68, 187
ScrFI CCNGG 1 cut(s) 368
SduI GDGCHC 1 cut(s) 328
SetI ASST 9 cut(s) 55, 142, 252, 274, 322, 328, 372, 447, 466
SexAI ACCWGGT 1 cut(s) 366
SfaNI GCATC 2 cut(s) 31, 493
SfcI CTRYAG 1 cut(s) 390
SmlI CTYRAG 2 cut(s) 30, 156
SmoI CTYRAG 2 cut(s) 30, 156
Sse9I AATT 5 cut(s) 9, 77, 108, 253, 410
SspMI CTAG 2 cut(s) 137, 287
SstI GAGCTC 1 cut(s) 328
StyD4I CCNGG 1 cut(s) 366
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 1 cut(s) 274
TaqI TCGA 1 cut(s) 322
TasI AATT 5 cut(s) 9, 77, 108, 253, 410
TfiI GAWTC 2 cut(s) 47, 395
Tru1I TTAA 2 cut(s) 413, 426
Tru9I TTAA 2 cut(s) 413, 426
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 5 cut(s) 17, 76, 141, 193, 308
XagI CCTNNNNNAGG 1 cut(s) 33
XapI RAATTY 1 cut(s) 253
XceI RCATGY 1 cut(s) 437
XspI CTAG 2 cut(s) 137, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.