RchiOBHm_Chr2g0113561

Glutamine amidotransferase domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
25668188 .. 25669243
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48690

Sequence Viewer

Length: 657 bp
ATGCTTTGCATTTTCAATCTTCAGGGTTCTCCAGATTTAAAAGCAGCAAGAGAAGTTGCTGATTATCTTGGAACTCATCATCACGAGTTTCACTTTACTGTTCAGGAAGGCATAGATGCACTTGAAGTTATCTACCATATTGAGACATATGATGTGACCACTGTCAGAGCAAGCACTCCAATGTTTCTTATGTCTCGTAAGATAAAATCTCTGGGAGTAAAAATGGTCCTTTCTGGTGAAGGTTCAGATGAAATCTTTGGTGGCTACTTGTATTTCCACAAGGCACCAAACAAGGAGGAGTTTCACCAAGAAACATGCCAGAAGGTATTCCATATAAACTATCTCTGTATTGTTCTCTTCTCTTGTTTTTGTGCCATATGTTTATGTACTTGCAGTATTACTGGACTTAATTTTACTACCAATGCTGCGAGATCGACAGTTCCCAGTGGTCCAAGCAGTGTGGCATGCAGCACAGCAAAAGCTGTGGAGTGGGATGCGGAATGGTCCAAGAACCCTGATCCATCTGGTTGCGCTGCTCTTGGTGTACATGCAGCTGCGTATGAGGAATCCAAAGATGTGAAGACTGGAAGTCTTGTGAGTGACTCTCCACAGAAACTTGTAAAAGGGGTTGCAGAGAAAGTGGCTGCAGTAGTTTGA

Protein Analysis

218

Amino Acids

23.72

Weight (kDa)

5.82

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asn_synthase PF00733 8 - 101 2.3e-28 Asparagine synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 283
AciI CCGC 1 cut(s) 497
AclWI GGATC 1 cut(s) 512
AcuI CTGAAG 1 cut(s) 5
AfaI GTAC 2 cut(s) 388, 546
AgsI TTSAA 2 cut(s) 16, 125
AhdI GACNNNNNGTC 1 cut(s) 588
AluBI AGCT 2 cut(s) 482, 554
AluI AGCT 2 cut(s) 482, 554
Alw26I GTCTC 2 cut(s) 137, 198
AlwI GGATC 1 cut(s) 512
ApeKI GCWGC 7 cut(s) 44, 425, 468, 533, 551, 554, 644
Asp700I GAANNNNTTC 1 cut(s) 326
AspLEI GCGC 1 cut(s) 533
AspS9I GGNCC 3 cut(s) 226, 449, 504
AsuHPI GGTGA 2 cut(s) 248, 296
AvaII GGWCC 3 cut(s) 226, 449, 504
BanI GGYRCC 1 cut(s) 283
BauI CACGAG 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 587
BbvI GCAGC 7 cut(s) 56, 412, 480, 520, 541, 563, 631
BccI CCATC 1 cut(s) 529
BcoDI GTCTC 2 cut(s) 137, 198
BfmI CTRYAG 1 cut(s) 645
BisI GCNGC 7 cut(s) 45, 426, 469, 534, 552, 555, 645
BlsI GCNGC 7 cut(s) 46, 427, 470, 535, 553, 556, 646
Bme18I GGWCC 3 cut(s) 226, 449, 504
BmeRI GACNNNNNGTC 1 cut(s) 588
BmgT120I GGNCC 3 cut(s) 226, 449, 504
BmiI GGNNCC 1 cut(s) 285
BmrI ACTGGG 1 cut(s) 438
BmsI GCATC 2 cut(s) 106, 484
BmuI ACTGGG 1 cut(s) 438
BoxI GACNNNNGTC 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 587
BplI GAGNNNNNCTC 2 cut(s) 589, 621
BpmI CTGGAG 1 cut(s) 15
Bse1I ACTGG 3 cut(s) 406, 444, 589
BseGI GGATG 1 cut(s) 499
BseNI ACTGG 3 cut(s) 406, 444, 589
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 7 cut(s) 56, 412, 480, 520, 541, 563, 631
BshNI GGYRCC 1 cut(s) 283
BsmAI GTCTC 2 cut(s) 137, 198
Bsp1407I TGTACA 1 cut(s) 544
Bsp143I GATC 2 cut(s) 431, 517
BspACI CCGC 1 cut(s) 497
BspLI GGNNCC 1 cut(s) 285
BspMAI CTGCAG 1 cut(s) 649
BspPI GGATC 1 cut(s) 512
BspT107I GGYRCC 1 cut(s) 283
BsrGI TGTACA 1 cut(s) 544
BsrI ACTGG 3 cut(s) 406, 444, 589
BssMI GATC 2 cut(s) 431, 517
BssSI CACGAG 1 cut(s) 83
Bst2BI CACGAG 1 cut(s) 83
Bst4CI ACNGT 3 cut(s) 100, 163, 439
Bst6I CTCTTC 1 cut(s) 362
BstAUI TGTACA 1 cut(s) 544
BstC8I GCNNGC 2 cut(s) 172, 466
BstF5I GGATG 1 cut(s) 499
BstHHI GCGC 1 cut(s) 533
BstKTI GATC 2 cut(s) 434, 520
BstMAI GTCTC 2 cut(s) 137, 198
BstMBI GATC 2 cut(s) 431, 517
BstNSI RCATGY 3 cut(s) 318, 468, 551
BstPAI GACNNNNGTC 1 cut(s) 161
BstSFI CTRYAG 1 cut(s) 645
BstV1I GCAGC 7 cut(s) 56, 412, 480, 520, 541, 563, 631
BstV2I GAAGAC 1 cut(s) 587
BtsCI GGATG 1 cut(s) 499
BtsI GCAGTG 1 cut(s) 463
BtsIMutI CAGTG 3 cut(s) 159, 451, 463
Cac8I GCNNGC 2 cut(s) 172, 466
CfoI GCGC 1 cut(s) 533
Cfr13I GGNCC 3 cut(s) 226, 449, 504
Csp6I GTAC 2 cut(s) 387, 545
CspCI CAANNNNNGTGG 4 cut(s) 441, 465, 476, 500
CviAII CATG 3 cut(s) 315, 465, 548
CviJI RGCY 4 cut(s) 264, 482, 554, 644
CviKI_1 RGCY 4 cut(s) 264, 482, 554, 644
CviQI GTAC 2 cut(s) 387, 545
DpnI GATC 2 cut(s) 433, 519
DpnII GATC 2 cut(s) 431, 517
DraI TTTAAA 1 cut(s) 39
DriI GACNNNNNGTC 1 cut(s) 588
Eam1104I CTCTTC 1 cut(s) 362
Eam1105I GACNNNNNGTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 362
Eco47I GGWCC 3 cut(s) 226, 449, 504
Eco57I CTGAAG 1 cut(s) 5
FaeI CATG 3 cut(s) 318, 468, 551
FatI CATG 3 cut(s) 314, 464, 547
FauNDI CATATG 2 cut(s) 148, 377
Fnu4HI GCNGC 7 cut(s) 45, 426, 469, 534, 552, 555, 645
FokI GGATG 1 cut(s) 506
Fsp4HI GCNGC 7 cut(s) 45, 426, 469, 534, 552, 555, 645
GlaI GCGC 1 cut(s) 532
GluI GCNGC 7 cut(s) 45, 426, 469, 534, 552, 555, 645
GsuI CTGGAG 1 cut(s) 15
HhaI GCGC 1 cut(s) 533
Hin1II CATG 3 cut(s) 318, 468, 551
Hin6I GCGC 1 cut(s) 531
HinP1I GCGC 1 cut(s) 531
HinfI GANTC 2 cut(s) 566, 602
HphI GGTGA 2 cut(s) 248, 296
Hpy166II GTNNAC 1 cut(s) 545
Hpy188I TCNGA 2 cut(s) 167, 247
Hpy188III TCNNGA 3 cut(s) 32, 83, 104
Hpy8I GTNNAC 1 cut(s) 545
HpyAV CCTTC 3 cut(s) 101, 233, 316
HpyCH4III ACNGT 3 cut(s) 100, 163, 439
HpyCH4V TGCA 7 cut(s) 9, 119, 393, 468, 551, 632, 647
Hsp92II CATG 3 cut(s) 318, 468, 551
HspAI GCGC 1 cut(s) 531
Kzo9I GATC 2 cut(s) 431, 517
Lsp1109I GCAGC 7 cut(s) 56, 412, 480, 520, 541, 563, 631
LweI GCATC 2 cut(s) 106, 484
MaeIII GTNAC 2 cut(s) 154, 599
MalI GATC 2 cut(s) 433, 519
MboI GATC 2 cut(s) 431, 517
MboII GAAGA 3 cut(s) 11, 349, 592
MluCI AATT 1 cut(s) 409
MlyI GAGTC 1 cut(s) 596
MnlI CCTC 2 cut(s) 289, 556
MroXI GAANNNNTTC 1 cut(s) 326
MseI TTAA 2 cut(s) 38, 408
MslI CAYNNNNRTG 1 cut(s) 179
MspA1I CMGCKG 1 cut(s) 554
NdeI CATATG 2 cut(s) 148, 377
NdeII GATC 2 cut(s) 431, 517
NlaIII CATG 3 cut(s) 318, 468, 551
NlaIV GGNNCC 1 cut(s) 285
NmuCI GTSAC 2 cut(s) 154, 599
NspI RCATGY 3 cut(s) 318, 468, 551
PaeI GCATGC 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 326
PfeI GAWTC 1 cut(s) 566
PkrI GCNGC 7 cut(s) 46, 427, 470, 535, 553, 556, 646
PleI GAGTC 1 cut(s) 596
PpsI GAGTC 1 cut(s) 596
PshAI GACNNNNGTC 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 3 cut(s) 226, 449, 504
PstI CTGCAG 1 cut(s) 649
PvuII CAGCTG 1 cut(s) 554
RsaI GTAC 2 cut(s) 388, 546
RsaNI GTAC 2 cut(s) 387, 545
RseI CAYNNNNRTG 1 cut(s) 179
SaqAI TTAA 2 cut(s) 38, 408
SatI GCNGC 7 cut(s) 45, 426, 469, 534, 552, 555, 645
Sau3AI GATC 2 cut(s) 431, 517
Sau96I GGNCC 3 cut(s) 226, 449, 504
SchI GAGTC 1 cut(s) 596
SetI ASST 4 cut(s) 244, 327, 484, 556
SfaNI GCATC 2 cut(s) 106, 484
SfcI CTRYAG 1 cut(s) 645
SinI GGWCC 3 cut(s) 226, 449, 504
SmiMI CAYNNNNRTG 1 cut(s) 179
SphI GCATGC 1 cut(s) 468
Sse9I AATT 1 cut(s) 409
SsiI CCGC 1 cut(s) 497
TaaI ACNGT 3 cut(s) 100, 163, 439
TaqI TCGA 1 cut(s) 434
TasI AATT 1 cut(s) 409
TatI WGTACW 2 cut(s) 386, 544
TfiI GAWTC 1 cut(s) 566
Tru1I TTAA 2 cut(s) 38, 408
Tru9I TTAA 2 cut(s) 38, 408
TscAI CASTG 3 cut(s) 166, 451, 463
TseFI GTSAC 2 cut(s) 154, 599
TseI GCWGC 7 cut(s) 44, 425, 468, 533, 551, 554, 644
Tsp45I GTSAC 2 cut(s) 154, 599
TspDTI ATGAA 1 cut(s) 264
TspRI CASTG 3 cut(s) 166, 451, 463
VpaK11BI GGWCC 3 cut(s) 226, 449, 504
XceI RCATGY 3 cut(s) 318, 468, 551
XmnI GAANNNNTTC 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.