Rmu_sc0030314.1_g000001

Zinc finger MYM-type protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030314.1
Physical Location & Seq
Forward (+)
1 .. 863
863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030314.1_g000001.1.cds

Sequence Viewer

Length: 575 bp
agagtgtaaggttgttggcacgccagggttgtgcttttaaaggccatgatgaatcggttaattcatccaatggtggcaatttcaatgcggttgtgaattcctttggaagaatgaatatggatgttcgcagagtcttacaaaatgctcctagtaatgccaagtatatttctccccttattcaaaaacaaattctaaatatacttggtaacaaagttagaaccaagattcaggaggaagtgggagatgccaaattttgtatccttgttgatgaagctattgatgtatctaatagggaacaaatggctatcattcttcgatttgttgattgtgatgggtttattagagaacggtttttcaaagtgcttagtgtggcagacacttgttctcaaactctaaaagatgagatatctaaagtccttactcaatatgatcttcaagtagaaaatatgcgtgggcaaggatatgatggtgctagcaacatgcggggtgaatttaaggtttgcaagctttgttttgtgaagagtgattccggaggccgacgaccggtgaccggagtctggcgaggtcttcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

190

Amino Acids

21.25

Weight (kDa)

9.1

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 529
AciI CCGC 2 cut(s) 88, 483
AcsI RAATTY 4 cut(s) 96, 188, 250, 490
AfiI CCNNNNNNNGG 3 cut(s) 543, 550, 557
AgeI ACCGGT 1 cut(s) 543
AgsI TTSAA 5 cut(s) 84, 181, 357, 436, 571
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 2 cut(s) 274, 507
AluI AGCT 2 cut(s) 274, 507
Aor13HI TCCGGA 1 cut(s) 529
AoxI GGCC 2 cut(s) 42, 534
ApoI RAATTY 4 cut(s) 96, 188, 250, 490
AsiGI ACCGGT 1 cut(s) 543
AsuHPI GGTGA 2 cut(s) 499, 558
AsuNHI GCTAGC 1 cut(s) 472
BbsI GAAGAC 1 cut(s) 559
BccI CCATC 2 cut(s) 325, 460
BciT130I CCWGG 1 cut(s) 25
BciVI GTATCC 1 cut(s) 268
BfaI CTAG 2 cut(s) 149, 473
BfuI GTATCC 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 25
BmsI GCATC 1 cut(s) 234
BmtI GCTAGC 1 cut(s) 476
BoxI GACNNNNGTC 1 cut(s) 553
BpiI GAAGAC 1 cut(s) 559
BsaJI CCNNGG 1 cut(s) 24
BsaWI WCCGGW 3 cut(s) 529, 543, 550
Bsc4I CCNNNNNNNGG 3 cut(s) 543, 550, 557
Bse118I RCCGGY 1 cut(s) 543
BseAI TCCGGA 1 cut(s) 529
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 24
BseGI GGATG 2 cut(s) 64, 126
BseLI CCNNNNNNNGG 3 cut(s) 543, 550, 557
Bsh1285I CGRYCG 1 cut(s) 544
BshFI GGCC 2 cut(s) 44, 536
BshTI ACCGGT 1 cut(s) 543
BsiEI CGRYCG 1 cut(s) 544
BsiSI CCGG 3 cut(s) 530, 544, 551
BslI CCNNNNNNNGG 3 cut(s) 543, 550, 557
BsnI GGCC 2 cut(s) 44, 536
Bsp13I TCCGGA 1 cut(s) 529
Bsp143I GATC 1 cut(s) 429
BspACI CCGC 2 cut(s) 88, 483
BspANI GGCC 2 cut(s) 44, 536
BspEI TCCGGA 1 cut(s) 529
BspOI GCTAGC 1 cut(s) 476
BsrFI RCCGGY 1 cut(s) 543
BssAI RCCGGY 1 cut(s) 543
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 429
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 514
BstC8I GCNNGC 3 cut(s) 21, 474, 505
BstDEI CTNAG 1 cut(s) 364
BstEII GGTNACC 1 cut(s) 546
BstF5I GGATG 2 cut(s) 64, 126
BstKTI GATC 1 cut(s) 432
BstMBI GATC 1 cut(s) 429
BstMCI CGRYCG 1 cut(s) 544
BstNI CCWGG 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 483
BstPAI GACNNNNGTC 1 cut(s) 553
BstPI GGTNACC 1 cut(s) 546
BstSCI CCNGG 1 cut(s) 23
BstV2I GAAGAC 1 cut(s) 559
BsuI GTATCC 1 cut(s) 268
BsuRI GGCC 2 cut(s) 44, 536
BtsCI GGATG 2 cut(s) 64, 126
Cac8I GCNNGC 3 cut(s) 21, 474, 505
Cfr10I RCCGGY 1 cut(s) 543
CspAI ACCGGT 1 cut(s) 543
CviAII CATG 2 cut(s) 46, 480
CviJI RGCY 5 cut(s) 44, 274, 304, 507, 536
CviKI_1 RGCY 5 cut(s) 44, 274, 304, 507, 536
DdeI CTNAG 1 cut(s) 364
DpnI GATC 1 cut(s) 431
DpnII GATC 1 cut(s) 429
DraI TTTAAA 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 514
EarI CTCTTC 1 cut(s) 514
Eco32I GATATC 1 cut(s) 407
Eco91I GGTNACC 1 cut(s) 546
EcoO65I GGTNACC 1 cut(s) 546
EcoRI GAATTC 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 23
EcoRV GATATC 1 cut(s) 407
FaeI CATG 2 cut(s) 49, 483
FaiI YATR 8 cut(s) 47, 118, 164, 199, 428, 448, 464, 481
FatI CATG 2 cut(s) 45, 479
FauI CCCGC 1 cut(s) 476
FokI GGATG 2 cut(s) 51, 133
FspBI CTAG 2 cut(s) 149, 473
HaeIII GGCC 2 cut(s) 44, 536
HapII CCGG 3 cut(s) 530, 544, 551
Hin1II CATG 2 cut(s) 49, 483
HindIII AAGCTT 1 cut(s) 505
HinfI GANTC 5 cut(s) 52, 131, 225, 526, 554
HpaII CCGG 3 cut(s) 530, 544, 551
HphI GGTGA 2 cut(s) 499, 558
Hpy188III TCNNGA 2 cut(s) 229, 530
Hpy99I CGWCG 1 cut(s) 542
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4V TGCA 1 cut(s) 503
HpyF3I CTNAG 1 cut(s) 364
Hsp92II CATG 2 cut(s) 49, 483
Kpn2I TCCGGA 1 cut(s) 529
Kzo9I GATC 1 cut(s) 429
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 7 cut(s) 10, 37, 214, 543, 543, 557, 564
LweI GCATC 1 cut(s) 234
MaeI CTAG 2 cut(s) 149, 473
MaeIII GTNAC 2 cut(s) 205, 546
MalI GATC 1 cut(s) 431
MboI GATC 1 cut(s) 429
MboII GAAGA 5 cut(s) 119, 304, 424, 531, 559
MluCI AATT 6 cut(s) 60, 78, 96, 188, 250, 490
MlyI GAGTC 2 cut(s) 140, 563
MnlI CCTC 3 cut(s) 225, 526, 556
MroI TCCGGA 1 cut(s) 529
MseI TTAA 3 cut(s) 38, 59, 494
MspI CCGG 3 cut(s) 530, 544, 551
MspR9I CCNGG 1 cut(s) 25
MvaI CCWGG 1 cut(s) 25
NdeII GATC 1 cut(s) 429
NheI GCTAGC 1 cut(s) 472
NlaIII CATG 2 cut(s) 49, 483
NmuCI GTSAC 1 cut(s) 546
NspI RCATGY 1 cut(s) 483
PfeI GAWTC 3 cut(s) 52, 225, 526
PinAI ACCGGT 1 cut(s) 543
PleI GAGTC 2 cut(s) 139, 562
PpsI GAGTC 2 cut(s) 139, 562
PshAI GACNNNNGTC 1 cut(s) 553
Psp6I CCWGG 1 cut(s) 23
PspEI GGTNACC 1 cut(s) 546
PspGI CCWGG 1 cut(s) 23
SaqAI TTAA 3 cut(s) 38, 59, 494
Sau3AI GATC 1 cut(s) 429
SchI GAGTC 2 cut(s) 140, 563
ScrFI CCNGG 1 cut(s) 25
SetI ASST 5 cut(s) 13, 276, 500, 509, 567
SfaNI GCATC 1 cut(s) 234
Sse9I AATT 6 cut(s) 60, 78, 96, 188, 250, 490
SsiI CCGC 2 cut(s) 88, 483
SspMI CTAG 2 cut(s) 149, 473
StyD4I CCNGG 1 cut(s) 23
TaaI ACNGT 1 cut(s) 350
TaqI TCGA 1 cut(s) 315
TasI AATT 6 cut(s) 60, 78, 96, 188, 250, 490
TfiI GAWTC 3 cut(s) 52, 225, 526
Tru1I TTAA 3 cut(s) 38, 59, 494
Tru9I TTAA 3 cut(s) 38, 59, 494
TseFI GTSAC 1 cut(s) 546
Tsp45I GTSAC 1 cut(s) 546
TspDTI ATGAA 4 cut(s) 53, 65, 127, 284
XapI RAATTY 4 cut(s) 96, 188, 250, 490
XceI RCATGY 1 cut(s) 483
XspI CTAG 2 cut(s) 149, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.