Rmu_sc0000446.1_g000055

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000446.1
OG0000122
Physical Location & Seq
Reverse (-)
260587 .. 261297
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000446.1_g000055.1.cds

Sequence Viewer

Length: 711 bp
atgggtgatattccaagttcggttgtggaagaaccttcttcttctgtacgagttgagtctcatgaaattgatgttaatcacattgaacgtgatccgggaaaacgccctgcaatctcgtcatatcctattaatgagcatgatgaatttcgaagaaaatatatactttatggtccttatcaaccaaaattagaagagtgtccaacacatctttgtggagatcaagatcgcagatttaatgggaagtggtttgaaaaatatccatggcttgagtactctaatgagaatgataaggcattttgttttccatgctttcttttttatagcagtccttcgaggcattctttgttcacatcttatgggtttgataattggagaaggatcggtgaagttcaatgttgctttaaaaagcatgtagggaagactgactccccacatcacaagtccatgcaagatatgttgggcttaaaacatgtgtgtagacatattgatagagtcatgaatccacaaccgccagaattgatacagcaaaatcggttgtggctcaaggctactatagaggctgtaagattgttagcaaagcaagcactttcatttagaggtgatgatgaatctattgagtcatctaatcgtgcaaatgttgttgagatggtggattcctttgggagaatgaatgaggaagttgcaaaaatcaccttagaaaatgccccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

236

Amino Acids

27.48

Weight (kDa)

6.21

Isoelectric Point (pI)

62.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 478
AciI CCGC 1 cut(s) 509
AclWI GGATC 2 cut(s) 86, 386
AcsI RAATTY 1 cut(s) 143
AfaI GTAC 2 cut(s) 48, 272
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 3 cut(s) 86, 251, 392
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 2 cut(s) 86, 386
ApoI RAATTY 1 cut(s) 143
AseI ATTAAT 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 170
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 4 cut(s) 17, 395, 611, 682
AsuII TTCGAA 1 cut(s) 148
AvaII GGWCC 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 425
BccI CCATC 1 cut(s) 640
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 552
BmcAI AGTACT 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 425
Bpu14I TTCGAA 1 cut(s) 148
BpuEI CTTGAG 2 cut(s) 287, 527
BpuMI CCSGG 1 cut(s) 96
BsaBI GATNNNNATC 2 cut(s) 75, 222
BsaJI CCNNGG 1 cut(s) 260
Bse8I GATNNNNATC 2 cut(s) 75, 222
BseDI CCNNGG 1 cut(s) 260
BseJI GATNNNNATC 2 cut(s) 75, 222
BsiSI CCGG 1 cut(s) 95
BsmAI GTCTC 1 cut(s) 63
BsmI GAATGC 1 cut(s) 337
Bsp119I TTCGAA 1 cut(s) 148
Bsp143I GATC 4 cut(s) 91, 217, 223, 378
Bsp19I CCATGG 1 cut(s) 260
BspACI CCGC 1 cut(s) 509
BspHI TCATGA 2 cut(s) 61, 495
BspPI GGATC 2 cut(s) 86, 386
BspT104I TTCGAA 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 4 cut(s) 91, 217, 223, 378
BssT1I CCWWGG 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 186
BstBI TTCGAA 1 cut(s) 148
BstC8I GCNNGC 1 cut(s) 582
BstDEI CTNAG 1 cut(s) 694
BstDSI CCRYGG 1 cut(s) 260
BstKTI GATC 4 cut(s) 94, 220, 226, 381
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 4 cut(s) 91, 217, 223, 378
BstMWI GCNNNNNNNGC 1 cut(s) 581
BstNSI RCATGY 2 cut(s) 413, 473
BstSCI CCNGG 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 552
BstV2I GAAGAC 1 cut(s) 425
BtgI CCRYGG 1 cut(s) 260
Cac8I GCNNGC 1 cut(s) 582
CciI TCATGA 2 cut(s) 61, 495
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 47, 271
CviAII CATG 8 cut(s) 62, 137, 261, 306, 410, 445, 470, 496
CviJI RGCY 5 cut(s) 265, 462, 541, 548, 560
CviKI_1 RGCY 5 cut(s) 265, 462, 541, 548, 560
CviQI GTAC 2 cut(s) 47, 271
DdeI CTNAG 1 cut(s) 694
DpnI GATC 4 cut(s) 93, 219, 225, 380
DpnII GATC 4 cut(s) 91, 217, 223, 378
DraI TTTAAA 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 8 cut(s) 65, 140, 264, 309, 413, 448, 473, 499
FatI CATG 8 cut(s) 61, 136, 260, 305, 409, 444, 469, 495
FblI GTMKAC 1 cut(s) 478
HapII CCGG 1 cut(s) 95
Hin1II CATG 8 cut(s) 65, 140, 264, 309, 413, 448, 473, 499
HinfI GANTC 7 cut(s) 56, 425, 492, 499, 608, 617, 653
HpaII CCGG 1 cut(s) 95
HphI GGTGA 4 cut(s) 17, 395, 611, 682
Hpy166II GTNNAC 2 cut(s) 348, 479
Hpy188III TCNNGA 3 cut(s) 62, 221, 496
Hpy8I GTNNAC 2 cut(s) 348, 479
HpyAV CCTTC 3 cut(s) 45, 339, 369
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 4 cut(s) 110, 448, 632, 683
HpyF10VI GCNNNNNNNGC 1 cut(s) 581
HpyF3I CTNAG 1 cut(s) 694
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 8 cut(s) 65, 140, 264, 309, 413, 448, 473, 499
Kzo9I GATC 4 cut(s) 91, 217, 223, 378
LpnPI CCDG 3 cut(s) 108, 120, 525
MaeII ACGT 1 cut(s) 88
MalI GATC 4 cut(s) 93, 219, 225, 380
MboI GATC 4 cut(s) 91, 217, 223, 378
MboII GAAGA 6 cut(s) 30, 33, 41, 162, 203, 430
MluCI AATT 5 cut(s) 66, 143, 185, 367, 515
MlyI GAGTC 4 cut(s) 65, 419, 501, 626
MmeI TCCRAC 1 cut(s) 224
MnlI CCTC 4 cut(s) 327, 550, 590, 667
MseI TTAA 5 cut(s) 75, 129, 234, 402, 464
MslI CAYNNNNRTG 1 cut(s) 210
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 581
NciI CCSGG 1 cut(s) 96
NcoI CCATGG 1 cut(s) 260
NdeII GATC 4 cut(s) 91, 217, 223, 378
NlaIII CATG 8 cut(s) 65, 140, 264, 309, 413, 448, 473, 499
NspI RCATGY 2 cut(s) 413, 473
NspV TTCGAA 1 cut(s) 148
PagI TCATGA 2 cut(s) 61, 495
PciI ACATGT 1 cut(s) 469
PctI GAATGC 1 cut(s) 337
PfeI GAWTC 3 cut(s) 499, 608, 653
PfoI TCCNGGA 1 cut(s) 94
PleI GAGTC 4 cut(s) 64, 419, 500, 625
PpsI GAGTC 4 cut(s) 64, 419, 500, 625
PscI ACATGT 1 cut(s) 469
PshBI ATTAAT 1 cut(s) 129
PspPI GGNCC 1 cut(s) 170
RsaI GTAC 2 cut(s) 48, 272
RsaNI GTAC 2 cut(s) 47, 271
RseI CAYNNNNRTG 1 cut(s) 210
SaqAI TTAA 5 cut(s) 75, 129, 234, 402, 464
Sau3AI GATC 4 cut(s) 91, 217, 223, 378
Sau96I GGNCC 1 cut(s) 170
ScaI AGTACT 1 cut(s) 272
SchI GAGTC 4 cut(s) 65, 419, 501, 626
ScrFI CCNGG 1 cut(s) 96
SetI ASST 4 cut(s) 37, 91, 601, 695
SfcI CTRYAG 1 cut(s) 552
SfuI TTCGAA 1 cut(s) 148
SinI GGWCC 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 2 cut(s) 266, 542
SmoI CTYRAG 2 cut(s) 266, 542
Sse9I AATT 5 cut(s) 66, 143, 185, 367, 515
SsiI CCGC 1 cut(s) 509
StyD4I CCNGG 1 cut(s) 94
StyI CCWWGG 1 cut(s) 260
TaiI ACGT 1 cut(s) 91
TaqI TCGA 2 cut(s) 148, 332
TasI AATT 5 cut(s) 66, 143, 185, 367, 515
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 3 cut(s) 499, 608, 653
Tru1I TTAA 5 cut(s) 75, 129, 234, 402, 464
Tru9I TTAA 5 cut(s) 75, 129, 234, 402, 464
TspDTI ATGAA 6 cut(s) 78, 156, 512, 579, 621, 683
VpaK11BI GGWCC 1 cut(s) 170
VspI ATTAAT 1 cut(s) 129
XapI RAATTY 1 cut(s) 143
XceI RCATGY 2 cut(s) 413, 473
XmiI GTMKAC 1 cut(s) 478
ZrmI AGTACT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.