Rw7G033880

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000122
Physical Location & Seq
Reverse (-)
49989229 .. 49991657
2429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G033880.1

Sequence Viewer

Length: 2001 bp
ATGTCTAATCATGAGCCAAAACCGAAGCGATCAAAATTCATTGACACATGGTTTAAAAGAACAAATGTTGAGTCTTCAAGTTCAAATGTGGTTTCTGAACCGTCCATATCCTCTCCAAATATTGATGTTGAACCTCAACCTTCCATTCCTGAACCACAAAATAATATCAACGCTCTTGAACGTGATCCTGGATTACGTTGTGCCATATGGAAATATCCAGTGAATGAGCGTGATAGCATTCGAAAAACCTATGTTTTGTTGGGTCCTTTTCAACCCGAGTTAGAATTTCCATTTGCTACACAAGGGAGTCAACAACGTAGATTTCAGTTTTCTTGGTTCAAGTCGTATCCATGGCTTGAGTATTCAATTGCTCTTGATAGGGCGTATTGCTTCCCTTGTTTTCTATTTGACACTGAAGTTTCTCACCATCCAGCATTCACCATTGATGGGTTTAAGGCTTGGAAGAGGCATGTAGGAGGCCTTAATTCTCCCCATCACGCTGCAATGCAAAAATGGGATTTAATAAGAAATCCTACCAAACAAATTGAAACGGTTTTTCAGTCAAAATCTGTGAAAGATATAGAGGACAATCGATTGAGGCTTAAGGCTTCAATAGAAAGTGTAAGATTGCTAGCTCATCAAGGAGTTGCTTTTAAAGGCCATGATGAAACTGAAGACTCATTGAATGCGGGACATTTTAGAGAGGTCATAAAATCCTTTTCAAGAATGAGTGTAGAGGTTGAGAGAGTTGTTTTGGGAAATGCCCCCGGAAATGCCAAGTACATTAGTCCATCAATTCAAAAGCAACTTCTCAATATTCTTGGTAATAAAGTGAGGAACAAGATACGTGAAGAAGTTGGAGATTCCAAATATTGTATTCTTGTTGATGAAGCAATAGATACATCTAGTAAGGAACAAATGGCGATTATTTTGAGGTTTGTTGATTGTCAAGGTATTCTTCGAGAACGATTTTTTAAGATTGTGAGTGTTCCTGACACTAACTCACAAACTCTTAAAGATGAGATTTCTAAAGTACTTACTATGTACAATCTTCAAGTGAGAAATATGCGTGGTCAAGGATATGATGGTGCTAGCAATATGAGAGCTAAAGGGGTGCATGACATTTGGCAATTTTTTTCAACTTTAAGTTTAATTGTGAATTTTGTTGATTCTTCTGCTAAGCGTCATTCTGCATTAAAAGCTGTGAGAAATGAAGAAATTGCAAATTTGGTAGCTTGTGGCCAACTTCAAACAGGTATTGGTGCTAATCAACACCCTTGGAATTGCAAGGACAAGCTTTGTTGGGATGACTTGGTAAGAAATGTAGAATCTTTTTGTGAAAAGCATGATATTGATATGCCTGATATGAATGCTCGTTATAAGGATGGTACAGGTCGTGGTTGCCAACAAAGAGGTTTCATTAAAGTTGAGCATCATTACCATATAGATGTCTTCAATGCTTTAGTTGATTTTCAGTTGAGTGAGTTGAATAGAAGATTCTCAGACCAAACATCTGAACTTCTTATACTTAGTTCAACCTTGGATCCTCGTGATAACTTCAGGAATTTTAAAACTGAAGATGCATGCAATCTTGCAAAGAAGTTTTATCCTGAAGATTTTGTTGATAGTGAAATGTTTGCTCTAGAATTAGAGTGTGCATATTATGAGAAAGATATGCGTAGTGATCCAAAGTTCCAGAATTTGGAATCCATTTTTGATTTGTGCAGAATGTTGGTTCAAACGAGGAAGTCAGAATTTTTCCCTATGCTTTATAGATTGATTTGTCTAGTTTTGACTATTCCTGTTTCTACGGCGACCACTGAAGGAGCATTTTCAGCTATGAATATCATTAAGAATAAACTTAGAAACAAGATGGAAGATGAGTTTCTTGGTGATTGTATGGTCCTTCACATTGAGAAGGAATATGCTGAATCTATTGACAATGAATCGGTGATCAAAGACTTTGAAGTTTGTGGAACTCGTAGAGTTAGATTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

666

Amino Acids

76.75

Weight (kDa)

6.52

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 156 - 369 8.5e-49 Domain of unknown function (DUF4371)
Dimer_Tnp_hAT PF05699 566 - 640 5.5e-10 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1380
AccB7I CCANNNNNTGG 1 cut(s) 1702
AciI CCGC 1 cut(s) 689
AclWI GGATC 4 cut(s) 179, 1538, 1551, 1679
AcoI YGGCCR 1 cut(s) 1240
AcsI RAATTY 7 cut(s) 35, 284, 1159, 1225, 1564, 1699, 1754
AcuI CTGAAG 6 cut(s) 435, 693, 1543, 1596, 1632, 1842
AfaI GTAC 4 cut(s) 782, 1035, 1046, 1390
AfiI CCNNNNNNNGG 2 cut(s) 447, 1702
AflII CTTAAG 1 cut(s) 602
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 6 cut(s) 635, 1106, 1202, 1235, 1297, 1838
AluI AGCT 6 cut(s) 635, 1106, 1202, 1235, 1297, 1838
AlwI GGATC 4 cut(s) 179, 1538, 1551, 1679
Ama87I CYCGRG 1 cut(s) 275
AoxI GGCC 3 cut(s) 478, 658, 1240
ApeKI GCWGC 1 cut(s) 500
ApoI RAATTY 7 cut(s) 35, 284, 1159, 1225, 1564, 1699, 1754
ArsI GACNNNNNNTTYG 2 cut(s) 56, 88
AspS9I GGNCC 2 cut(s) 263, 1903
AsuC2I CCSGG 1 cut(s) 768
AsuHPI GGTGA 4 cut(s) 416, 430, 1904, 1963
AsuII TTCGAA 1 cut(s) 241
AsuNHI GCTAGC 2 cut(s) 631, 1091
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 2 cut(s) 263, 1903
BalI TGGCCA 1 cut(s) 1242
BamHI GGATCC 1 cut(s) 1543
BauI CACGAG 1 cut(s) 1548
BbsI GAAGAC 3 cut(s) 66, 681, 1444
BbvI GCAGC 1 cut(s) 487
BccI CCATC 7 cut(s) 435, 440, 501, 799, 1079, 1379, 1867
BceAI ACGGC 1 cut(s) 1827
BciT130I CCWGG 1 cut(s) 189
BciVI GTATCC 1 cut(s) 357
BclI TGATCA 1 cut(s) 1953
BcnI CCSGG 1 cut(s) 768
BfaI CTAG 5 cut(s) 632, 906, 1092, 1643, 1787
BfrI CTTAAG 1 cut(s) 602
BfuI GTATCC 1 cut(s) 357
BisI GCNGC 1 cut(s) 501
BlpI GCTNAGC 1 cut(s) 1179
BlsI GCNGC 1 cut(s) 502
BmcAI AGTACT 1 cut(s) 1035
Bme1390I CCNGG 2 cut(s) 189, 768
Bme18I GGWCC 2 cut(s) 263, 1903
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 2 cut(s) 263, 1903
BmiI GGNNCC 2 cut(s) 264, 1545
BmrFI CCNGG 2 cut(s) 189, 768
BmsI GCATC 2 cut(s) 1441, 1570
BmtI GCTAGC 2 cut(s) 635, 1095
BpiI GAAGAC 3 cut(s) 66, 681, 1444
Bpu1102I GCTNAGC 1 cut(s) 1179
Bpu14I TTCGAA 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 768
Bsa29I ATCGAT 1 cut(s) 592
BsaAI YACGTR 1 cut(s) 848
BsaJI CCNNGG 4 cut(s) 350, 766, 1277, 1539
Bsc4I CCNNNNNNNGG 2 cut(s) 447, 1702
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 510
BseBI CCWGG 1 cut(s) 189
BseCI ATCGAT 1 cut(s) 592
BseDI CCNNGG 4 cut(s) 350, 766, 1277, 1539
BseGI GGATG 3 cut(s) 427, 1312, 1390
BseLI CCNNNNNNNGG 2 cut(s) 447, 1702
BseMI GCAATG 1 cut(s) 510
BseMII CTCAG 1 cut(s) 1515
BseNI ACTGG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 487
BsgI GTGCAG 1 cut(s) 1744
BshFI GGCC 3 cut(s) 480, 660, 1242
BshVI ATCGAT 1 cut(s) 592
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 1 cut(s) 768
BslFI GGGAC 1 cut(s) 705
BslI CCNNNNNNNGG 2 cut(s) 447, 1702
BsmFI GGGAC 1 cut(s) 705
BsmI GAATGC 4 cut(s) 237, 434, 691, 1375
BsnI GGCC 3 cut(s) 480, 660, 1242
BsoBI CYCGRG 1 cut(s) 275
Bsp119I TTCGAA 1 cut(s) 241
Bsp1407I TGTACA 1 cut(s) 1044
Bsp143I GATC 5 cut(s) 29, 184, 1543, 1684, 1953
Bsp1720I GCTNAGC 1 cut(s) 1179
Bsp19I CCATGG 1 cut(s) 350
BspACI CCGC 1 cut(s) 689
BspANI GGCC 3 cut(s) 480, 660, 1242
BspCNI CTCAG 1 cut(s) 1514
BspDI ATCGAT 1 cut(s) 592
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 264, 1545
BspOI GCTAGC 2 cut(s) 635, 1095
BspPI GGATC 4 cut(s) 179, 1538, 1551, 1679
BspT104I TTCGAA 1 cut(s) 241
BspTI CTTAAG 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 510
BsrGI TGTACA 1 cut(s) 1044
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 4 cut(s) 350, 766, 1277, 1539
BssMI GATC 5 cut(s) 29, 184, 1543, 1684, 1953
BssSI CACGAG 1 cut(s) 1548
BssT1I CCWWGG 3 cut(s) 350, 1277, 1539
Bst2BI CACGAG 1 cut(s) 1548
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 102, 553
Bst6I CTCTTC 1 cut(s) 458
BstAFI CTTAAG 1 cut(s) 602
BstAUI TGTACA 1 cut(s) 1044
BstBAI YACGTR 1 cut(s) 848
BstBI TTCGAA 1 cut(s) 241
BstC8I GCNNGC 3 cut(s) 633, 1093, 1585
BstDEI CTNAG 4 cut(s) 1179, 1501, 1529, 1862
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 3 cut(s) 427, 1312, 1390
BstKTI GATC 5 cut(s) 32, 187, 1546, 1687, 1956
BstMBI GATC 5 cut(s) 29, 184, 1543, 1684, 1953
BstMWI GCNNNNNNNGC 2 cut(s) 1199, 1835
BstNI CCWGG 1 cut(s) 189
BstNSI RCATGY 2 cut(s) 473, 1587
BstSCI CCNGG 2 cut(s) 187, 766
BstV1I GCAGC 1 cut(s) 487
BstV2I GAAGAC 3 cut(s) 66, 681, 1444
BstX2I RGATCY 1 cut(s) 1543
BstYI RGATCY 1 cut(s) 1543
Bsu15I ATCGAT 1 cut(s) 592
BsuI GTATCC 1 cut(s) 357
BsuRI GGCC 3 cut(s) 480, 660, 1242
BsuTUI ATCGAT 1 cut(s) 592
BtgI CCRYGG 1 cut(s) 350
BtsCI GGATG 3 cut(s) 427, 1312, 1390
BtsIMutI CAGTG 3 cut(s) 225, 411, 1818
Cac8I GCNNGC 3 cut(s) 633, 1093, 1585
CciI TCATGA 1 cut(s) 10
Cfr13I GGNCC 2 cut(s) 263, 1903
ClaI ATCGAT 1 cut(s) 592
CseI GACGC 1 cut(s) 1172
Csp6I GTAC 4 cut(s) 781, 1034, 1045, 1389
CviAII CATG 8 cut(s) 11, 48, 351, 470, 662, 1118, 1346, 1584
CviQI GTAC 4 cut(s) 781, 1034, 1045, 1389
DdeI CTNAG 4 cut(s) 1179, 1501, 1529, 1862
DpnI GATC 5 cut(s) 31, 186, 1545, 1686, 1955
DpnII GATC 5 cut(s) 29, 184, 1543, 1684, 1953
DraI TTTAAA 3 cut(s) 55, 655, 1570
EaeI YGGCCR 1 cut(s) 1240
Eam1104I CTCTTC 1 cut(s) 458
EarI CTCTTC 1 cut(s) 458
Eco130I CCWWGG 3 cut(s) 350, 1277, 1539
Eco147I AGGCCT 1 cut(s) 480
Eco47I GGWCC 2 cut(s) 263, 1903
Eco57I CTGAAG 6 cut(s) 435, 693, 1543, 1596, 1632, 1842
Eco88I CYCGRG 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 263
EcoRII CCWGG 1 cut(s) 187
EcoT14I CCWWGG 3 cut(s) 350, 1277, 1539
EcoT22I ATGCAT 1 cut(s) 1585
ErhI CCWWGG 3 cut(s) 350, 1277, 1539
FaeI CATG 8 cut(s) 14, 51, 354, 473, 665, 1121, 1349, 1587
FalI AAGNNNNNCTT 2 cut(s) 942, 974
FaqI GGGAC 1 cut(s) 705
FatI CATG 8 cut(s) 10, 47, 350, 469, 661, 1117, 1345, 1583
FauI CCCGC 1 cut(s) 682
FauNDI CATATG 1 cut(s) 206
FbaI TGATCA 1 cut(s) 1953
Fnu4HI GCNGC 1 cut(s) 501
FokI GGATG 3 cut(s) 414, 1319, 1397
Fsp4HI GCNGC 1 cut(s) 501
FspBI CTAG 5 cut(s) 632, 906, 1092, 1643, 1787
GluI GCNGC 1 cut(s) 501
HaeIII GGCC 3 cut(s) 480, 660, 1242
HapII CCGG 1 cut(s) 768
HgaI GACGC 1 cut(s) 1172
Hin1II CATG 8 cut(s) 14, 51, 354, 473, 665, 1121, 1349, 1587
HincII GTYRAC 1 cut(s) 311
HindII GTYRAC 1 cut(s) 311
HindIII AAGCTT 1 cut(s) 1295
HpaII CCGG 1 cut(s) 768
HphI GGTGA 4 cut(s) 416, 430, 1904, 1963
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 4 cut(s) 97, 1504, 1516, 1753
Hpy8I GTNNAC 1 cut(s) 311
HpyAV CCTTC 4 cut(s) 150, 1817, 1912, 1916
HpyCH4III ACNGT 2 cut(s) 102, 553
HpyCH4IV ACGT 4 cut(s) 181, 196, 316, 847
HpyF10VI GCNNNNNNNGC 2 cut(s) 1199, 1835
HpyF3I CTNAG 4 cut(s) 1179, 1501, 1529, 1862
HpySE526I ACGT 4 cut(s) 181, 196, 316, 847
Hsp92II CATG 8 cut(s) 14, 51, 354, 473, 665, 1121, 1349, 1587
Ksp22I TGATCA 1 cut(s) 1953
Kzo9I GATC 5 cut(s) 29, 184, 1543, 1684, 1953
LmnI GCTCC 1 cut(s) 1826
Lsp1109I GCAGC 1 cut(s) 487
LweI GCATC 2 cut(s) 1441, 1570
MaeI CTAG 5 cut(s) 632, 906, 1092, 1643, 1787
MaeII ACGT 4 cut(s) 181, 196, 316, 847
MalI GATC 5 cut(s) 31, 186, 1545, 1686, 1955
MboI GATC 5 cut(s) 29, 184, 1543, 1684, 1953
MfeI CAATTG 1 cut(s) 366
MflI RGATCY 1 cut(s) 1543
MlsI TGGCCA 1 cut(s) 1242
MluNI TGGCCA 1 cut(s) 1242
MlyI GAGTC 3 cut(s) 80, 316, 671
MmeI TCCRAC 1 cut(s) 838
Mox20I TGGCCA 1 cut(s) 1242
Mph1103I ATGCAT 1 cut(s) 1585
MscI TGGCCA 1 cut(s) 1242
MslI CAYNNNNRTG 1 cut(s) 1446
Msp20I TGGCCA 1 cut(s) 1242
MspCI CTTAAG 1 cut(s) 602
MspI CCGG 1 cut(s) 768
MspR9I CCNGG 2 cut(s) 189, 768
MunI CAATTG 1 cut(s) 366
Mva1269I GAATGC 4 cut(s) 237, 434, 691, 1375
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 1199, 1835
NciI CCSGG 1 cut(s) 768
NcoI CCATGG 1 cut(s) 350
NdeI CATATG 1 cut(s) 206
NdeII GATC 5 cut(s) 29, 184, 1543, 1684, 1953
NheI GCTAGC 2 cut(s) 631, 1091
NlaIII CATG 8 cut(s) 14, 51, 354, 473, 665, 1121, 1349, 1587
NlaIV GGNNCC 2 cut(s) 264, 1545
NsiI ATGCAT 1 cut(s) 1585
NspI RCATGY 2 cut(s) 473, 1587
NspV TTCGAA 1 cut(s) 241
PaeI GCATGC 1 cut(s) 1587
PagI TCATGA 1 cut(s) 10
PceI AGGCCT 1 cut(s) 480
PctI GAATGC 4 cut(s) 237, 434, 691, 1375
PfeI GAWTC 7 cut(s) 863, 1169, 1328, 1497, 1706, 1931, 1946
PflMI CCANNNNNTGG 1 cut(s) 1702
PfoI TCCNGGA 1 cut(s) 187
PkrI GCNGC 1 cut(s) 502
PleI GAGTC 3 cut(s) 79, 315, 671
PpsI GAGTC 3 cut(s) 79, 315, 671
Ppu21I YACGTR 1 cut(s) 848
PpuMI RGGWCCY 1 cut(s) 263
PsiI TTATAA 1 cut(s) 1380
Psp5II RGGWCCY 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 187
PspGI CCWGG 1 cut(s) 187
PspN4I GGNNCC 2 cut(s) 264, 1545
PspPI GGNCC 2 cut(s) 263, 1903
PspPPI RGGWCCY 1 cut(s) 263
PsrI GAACNNNNNNTAC 2 cut(s) 1509, 1541
PsuI RGATCY 1 cut(s) 1543
RsaI GTAC 4 cut(s) 782, 1035, 1046, 1390
RsaNI GTAC 4 cut(s) 781, 1034, 1045, 1389
RseI CAYNNNNRTG 1 cut(s) 1446
SatI GCNGC 1 cut(s) 501
Sau3AI GATC 5 cut(s) 29, 184, 1543, 1684, 1953
Sau96I GGNCC 2 cut(s) 263, 1903
ScaI AGTACT 1 cut(s) 1035
SchI GAGTC 3 cut(s) 80, 316, 671
ScrFI CCNGG 2 cut(s) 189, 768
SfaNI GCATC 2 cut(s) 1441, 1570
SfuI TTCGAA 1 cut(s) 241
SinI GGWCC 2 cut(s) 263, 1903
SmiMI CAYNNNNRTG 1 cut(s) 1446
SmlI CTYRAG 2 cut(s) 356, 602
SmoI CTYRAG 2 cut(s) 356, 602
SphI GCATGC 1 cut(s) 1587
SseBI AGGCCT 1 cut(s) 480
SsiI CCGC 1 cut(s) 689
SspI AATATT 3 cut(s) 121, 817, 872
SspMI CTAG 5 cut(s) 632, 906, 1092, 1643, 1787
StuI AGGCCT 1 cut(s) 480
StyD4I CCNGG 2 cut(s) 187, 766
StyI CCWWGG 3 cut(s) 350, 1277, 1539
TaaI ACNGT 2 cut(s) 102, 553
TaiI ACGT 4 cut(s) 184, 199, 319, 850
TaqI TCGA 3 cut(s) 241, 592, 961
TatI WGTACW 3 cut(s) 780, 1033, 1044
TfiI GAWTC 7 cut(s) 863, 1169, 1328, 1497, 1706, 1931, 1946
TscAI CASTG 3 cut(s) 225, 418, 1825
TseI GCWGC 1 cut(s) 500
TspDTI ATGAA 8 cut(s) 28, 681, 903, 1227, 1382, 1408, 1856, 1959
TspRI CASTG 3 cut(s) 225, 418, 1825
Van91I CCANNNNNTGG 1 cut(s) 1702
Vha464I CTTAAG 1 cut(s) 602
VpaK11BI GGWCC 2 cut(s) 263, 1903
XapI RAATTY 7 cut(s) 35, 284, 1159, 1225, 1564, 1699, 1754
XbaI TCTAGA 1 cut(s) 1642
XceI RCATGY 2 cut(s) 473, 1587
XspI CTAG 5 cut(s) 632, 906, 1092, 1643, 1787
ZrmI AGTACT 1 cut(s) 1035
Zsp2I ATGCAT 1 cut(s) 1585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.