RchiOBHm_Chr7g0242581

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000122
Physical Location & Seq
Forward (+)
68806956 .. 68809068
2113 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21740

Sequence Viewer

Length: 990 bp
ATGAGCCCAAAGCGAAGCGATCAAAATTCATTGACTCATGGTTTAAAAGAACAAATGTTGAGTCTTCAAGTTCAAATGGTGTATTGCTTCCCTTGTTTTCTATTTGACACTGAAGATTCTCAGCATACAGCATTCACCGTTGATGGGTTTAAGGCTTGGAAGAGAGTTTGTGGTAGTGATAATGTGTTGATGAAGCATGTAGGAGGCCTTAATTCTCCCCATCATGCTGCAATGCAAAAATGGGATTTATTAAGAAATCCTACCAAACAAATTGAAACAATTTTTCAGTCAAAATCTAGTAAGGATATAGAGGACAATCGATTGAGGCTTAAGGCTTCAATAGAAAGTGTAAGATTGCTAGCTAATCAAGGAGCTGCTTTTAGAGGCCATGATGAAACTGAAAACTCATTGAATGCGGGATATTTTAGAGAAGTCATAAAATCTTTTTCAAGAATGAGTATTGAGGTTGAGAGAGTTGTTTTGGGAAATGCTCCCGGAAATGCCAAGTACATTAGTCCATCAATTCAAAAGCAACTTCTAAATATTCTTGGTAATAAAGTGAGGAACAAGATACGTGAAGAAGTTGGAGATTCCAAATATTGTATTCTTGTTGATGAAGCAGTAGATATATCTAGTAAGGAACAAATGGCCATTATTTTGAGGTTTGTTGATTGTCAAGGTATTATTCGAGAACGATTTTTTAAGATTGTGAGTGTTCCTAACACTACCTCACAAACTCTTAAAGATGAGATTTCTAAAGTACTTACTATGTACAATCTTCAAGTGAGAAATATGCGTGGTCAAGGATATGATGGTGCTAGTAATATGAGAGGTATTTATAATGGGTTACAAGCATTGTTTCTTGAAGAGTGTCCTTATGCTTATTATGTGCATTGTTTTGCTCACCGCTTGCAATTGTCATTGAATGCTACAGCTAAAGGGGTGCCGGAGATTTGGCAATTATTTTCAAGTTTAAGTTTAATTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

329

Amino Acids

37.33

Weight (kDa)

8.86

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 45 - 282 9.1e-52 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 840
AccB1I GGYRCC 1 cut(s) 943
AciI CCGC 2 cut(s) 416, 907
AcoI YGGCCR 1 cut(s) 648
AcsI RAATTY 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 132
AfaI GTAC 3 cut(s) 509, 762, 773
AfiI CCNNNNNNNGG 1 cut(s) 144
AflII CTTAAG 1 cut(s) 329
AluBI AGCT 3 cut(s) 362, 374, 935
AluI AGCT 3 cut(s) 362, 374, 935
AoxI GGCC 3 cut(s) 205, 385, 648
ApeKI GCWGC 2 cut(s) 227, 374
ApoI RAATTY 1 cut(s) 25
ArsI GACNNNNNNTTYG 2 cut(s) 46, 78
AsuC2I CCSGG 1 cut(s) 495
AsuHPI GGTGA 2 cut(s) 127, 896
AsuNHI GCTAGC 1 cut(s) 358
BalI TGGCCA 1 cut(s) 650
BanI GGYRCC 1 cut(s) 943
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 56
BbvI GCAGC 2 cut(s) 214, 361
BccI CCATC 4 cut(s) 137, 228, 526, 806
BcnI CCSGG 1 cut(s) 495
BfaI CTAG 4 cut(s) 297, 359, 633, 819
BfmI CTRYAG 1 cut(s) 930
BfrI CTTAAG 1 cut(s) 329
BisI GCNGC 2 cut(s) 228, 375
BlsI GCNGC 2 cut(s) 229, 376
BmcAI AGTACT 1 cut(s) 762
Bme1390I CCNGG 1 cut(s) 495
BmiI GGNNCC 1 cut(s) 945
BmrFI CCNGG 1 cut(s) 495
BmtI GCTAGC 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 495
Bsa29I ATCGAT 1 cut(s) 319
BsaAI YACGTR 1 cut(s) 575
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse3DI GCAATG 1 cut(s) 237
BseCI ATCGAT 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 237
BseMII CTCAG 1 cut(s) 134
BseXI GCAGC 2 cut(s) 214, 361
BshFI GGCC 3 cut(s) 207, 387, 650
BshNI GGYRCC 1 cut(s) 943
BshVI ATCGAT 1 cut(s) 319
BsiSI CCGG 2 cut(s) 495, 947
BslI CCNNNNNNNGG 1 cut(s) 144
BsmI GAATGC 3 cut(s) 131, 418, 931
BsnI GGCC 3 cut(s) 207, 387, 650
Bsp1286I GDGCHC 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 771
Bsp143I GATC 1 cut(s) 19
BspACI CCGC 2 cut(s) 416, 907
BspANI GGCC 3 cut(s) 207, 387, 650
BspCNI CTCAG 1 cut(s) 133
BspDI ATCGAT 1 cut(s) 319
BspLI GGNNCC 1 cut(s) 945
BspOI GCTAGC 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 943
BspTI CTTAAG 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 237
BsrGI TGTACA 1 cut(s) 771
BssMI GATC 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 2 cut(s) 155, 861
BstAFI CTTAAG 1 cut(s) 329
BstAUI TGTACA 1 cut(s) 771
BstBAI YACGTR 1 cut(s) 575
BstC8I GCNNGC 2 cut(s) 360, 911
BstDEI CTNAG 1 cut(s) 120
BstKTI GATC 1 cut(s) 22
BstMBI GATC 1 cut(s) 19
BstNSI RCATGY 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 493
BstSFI CTRYAG 1 cut(s) 930
BstV1I GCAGC 2 cut(s) 214, 361
BstV2I GAAGAC 1 cut(s) 56
Bsu15I ATCGAT 1 cut(s) 319
BsuRI GGCC 3 cut(s) 207, 387, 650
BsuTUI ATCGAT 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 2 cut(s) 360, 911
ClaI ATCGAT 1 cut(s) 319
Csp6I GTAC 3 cut(s) 508, 761, 772
CviAII CATG 4 cut(s) 38, 197, 224, 389
CviQI GTAC 3 cut(s) 508, 761, 772
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
DraI TTTAAA 1 cut(s) 45
EaeI YGGCCR 1 cut(s) 648
Eam1104I CTCTTC 2 cut(s) 155, 861
EarI CTCTTC 2 cut(s) 155, 861
Eco147I AGGCCT 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 4 cut(s) 41, 200, 227, 392
FatI CATG 4 cut(s) 37, 196, 223, 388
FauI CCCGC 1 cut(s) 409
Fnu4HI GCNGC 2 cut(s) 228, 375
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 228, 375
FspBI CTAG 4 cut(s) 297, 359, 633, 819
GluI GCNGC 2 cut(s) 228, 375
HaeIII GGCC 3 cut(s) 207, 387, 650
HapII CCGG 2 cut(s) 495, 947
Hin1II CATG 4 cut(s) 41, 200, 227, 392
HinfI GANTC 4 cut(s) 34, 61, 116, 590
HpaII CCGG 2 cut(s) 495, 947
HphI GGTGA 2 cut(s) 127, 896
Hpy188III TCNNGA 3 cut(s) 450, 689, 863
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 574
HpyCH4V TGCA 4 cut(s) 230, 235, 892, 913
HpyF3I CTNAG 1 cut(s) 120
HpySE526I ACGT 1 cut(s) 574
Hsp92II CATG 4 cut(s) 41, 200, 227, 392
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 2 cut(s) 371, 496
LpnPI CCDG 2 cut(s) 508, 960
Lsp1109I GCAGC 2 cut(s) 214, 361
MaeI CTAG 4 cut(s) 297, 359, 633, 819
MaeII ACGT 1 cut(s) 574
MaeIII GTNAC 1 cut(s) 846
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 6 cut(s) 56, 125, 172, 590, 770, 878
MfeI CAATTG 1 cut(s) 914
MhlI GDGCHC 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 650
MluCI AATT 8 cut(s) 25, 211, 270, 279, 522, 914, 959, 981
MluNI TGGCCA 1 cut(s) 650
MlyI GAGTC 2 cut(s) 28, 70
MmeI TCCRAC 1 cut(s) 565
MnlI CCTC 9 cut(s) 197, 304, 318, 377, 457, 555, 654, 739, 824
Mox20I TGGCCA 1 cut(s) 650
MscI TGGCCA 1 cut(s) 650
MseI TTAA 9 cut(s) 44, 150, 210, 251, 330, 702, 741, 974, 980
Msp20I TGGCCA 1 cut(s) 650
MspCI CTTAAG 1 cut(s) 329
MspI CCGG 2 cut(s) 495, 947
MspR9I CCNGG 1 cut(s) 495
MunI CAATTG 1 cut(s) 914
Mva1269I GAATGC 3 cut(s) 131, 418, 931
NciI CCSGG 1 cut(s) 495
NdeII GATC 1 cut(s) 19
NheI GCTAGC 1 cut(s) 358
NlaIII CATG 4 cut(s) 41, 200, 227, 392
NlaIV GGNNCC 1 cut(s) 945
NspI RCATGY 1 cut(s) 200
PceI AGGCCT 1 cut(s) 207
PctI GAATGC 3 cut(s) 131, 418, 931
PfeI GAWTC 2 cut(s) 116, 590
PfoI TCCNGGA 1 cut(s) 493
PkrI GCNGC 2 cut(s) 229, 376
PleI GAGTC 2 cut(s) 28, 69
PpsI GAGTC 2 cut(s) 28, 69
Ppu21I YACGTR 1 cut(s) 575
PsiI TTATAA 1 cut(s) 840
PspN4I GGNNCC 1 cut(s) 945
RsaI GTAC 3 cut(s) 509, 762, 773
RsaNI GTAC 3 cut(s) 508, 761, 772
SaqAI TTAA 9 cut(s) 44, 150, 210, 251, 330, 702, 741, 974, 980
SatI GCNGC 2 cut(s) 228, 375
Sau3AI GATC 1 cut(s) 19
ScaI AGTACT 1 cut(s) 762
SchI GAGTC 2 cut(s) 28, 70
ScrFI CCNGG 1 cut(s) 495
SduI GDGCHC 1 cut(s) 8
SetI ASST 9 cut(s) 364, 376, 468, 577, 665, 682, 731, 835, 937
SfcI CTRYAG 1 cut(s) 930
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 8 cut(s) 25, 211, 270, 279, 522, 914, 959, 981
SseBI AGGCCT 1 cut(s) 207
SsiI CCGC 2 cut(s) 416, 907
SspI AATATT 2 cut(s) 544, 599
SspMI CTAG 4 cut(s) 297, 359, 633, 819
StuI AGGCCT 1 cut(s) 207
StyD4I CCNGG 1 cut(s) 493
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 577
TaqI TCGA 2 cut(s) 319, 688
TasI AATT 8 cut(s) 25, 211, 270, 279, 522, 914, 959, 981
TatI WGTACW 3 cut(s) 507, 760, 771
TfiI GAWTC 2 cut(s) 116, 590
Tru1I TTAA 9 cut(s) 44, 150, 210, 251, 330, 702, 741, 974, 980
Tru9I TTAA 9 cut(s) 44, 150, 210, 251, 330, 702, 741, 974, 980
TscAI CASTG 1 cut(s) 115
TseI GCWGC 2 cut(s) 227, 374
TspDTI ATGAA 4 cut(s) 18, 206, 408, 630
TspRI CASTG 1 cut(s) 115
Vha464I CTTAAG 1 cut(s) 329
XapI RAATTY 1 cut(s) 25
XceI RCATGY 1 cut(s) 200
XspI CTAG 4 cut(s) 297, 359, 633, 819
ZrmI AGTACT 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.