Rw5G031830

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000122
Physical Location & Seq
Forward (+)
53037323 .. 53038168
846 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G031830.1

Sequence Viewer

Length: 789 bp
ATGCTGACTAGTATCATTAATGTTGTTGACTCATCTGCTAAGCATGTTTCTGAGTTAAAATCTATTCAAGAAGTTGAAGTTGTGGAACAAATTGCTGCTGGCGAACTTGAAACTAGAAAGGGAGCTAATCAGACATGCAATTTGCAAAGAGCTGGAGCTACAAGGTGGAGTTTAAGGTATTATTCTATCGAGAACTTGATGAAATTGTATAACTCAACTAGTTCAGTTTTGAAAAACATGATAGATAGTGGACTCAATGGAAAAATATGTGGAGAGGCTTTAGGTGCTTCTAAAGCTCTAAGATCATTTGACTTTGTGTTTTGCTTATTGTTGTTGGACCAAACTATGGGAATCACAAATGCTCTTTGTAAGTCGCTGCAAGAACAGTCTCAAGAGATCATAAATGTTATGAATCTAGTTTCTAGTATGAAGGGTTGTCTTAAAAAGTTGAGAGAATATGGTTGGGTTGATTTCTTCGCTAGTGTTGTATCGTTTTGTGACACACATACAATTGATCCTCCAGATTTTAGTGCTCGCCATATGGAAGGTACTGGTCGTCTTTCTCAACAACAAAATTGTGTCACTATTGAGCATTATAGATTCAATGAGCAAACAAGAGAACTCCTGATTCTTAGTTCTGCATTCGATCCTCGATTTGATTTTCAATCATTTGACATTGACAAAATATGTTGTTTGGCTGAGAAATTTTATCCTCATGATGTGCCTGATTTGAATGATCTAAGAGACCAGTTGGAGCATATTGAGTATCAATTCTTTGAACTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

262

Amino Acids

29.78

Weight (kDa)

5.11

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 346
AclWI GGATC 2 cut(s) 509, 641
AcsI RAATTY 1 cut(s) 704
AfaI GTAC 1 cut(s) 550
AfiI CCNNNNNNNGG 1 cut(s) 346
AgsI TTSAA 8 cut(s) 68, 77, 110, 232, 604, 665, 733, 779
AhlI ACTAGT 2 cut(s) 8, 218
AluBI AGCT 4 cut(s) 125, 152, 158, 296
AluI AGCT 4 cut(s) 125, 152, 158, 296
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 2 cut(s) 393, 738
AlwI GGATC 2 cut(s) 509, 641
ApeKI GCWGC 2 cut(s) 95, 376
ApoI RAATTY 1 cut(s) 704
ArsI GACNNNNNNTTYG 2 cut(s) 124, 156
AseI ATTAAT 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 337
AvaII GGWCC 1 cut(s) 337
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 2 cut(s) 82, 363
BcoDI GTCTC 2 cut(s) 393, 738
BcuI ACTAGT 2 cut(s) 8, 218
BfaI CTAG 6 cut(s) 9, 114, 219, 416, 423, 480
BisI GCNGC 2 cut(s) 96, 377
BlpI GCTNAGC 1 cut(s) 39
BlsI GCNGC 2 cut(s) 97, 378
Bme18I GGWCC 1 cut(s) 337
BmgT120I GGNCC 1 cut(s) 337
BpmI CTGGAG 2 cut(s) 174, 504
Bpu1102I GCTNAGC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 738
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse1I ACTGG 2 cut(s) 556, 748
BseLI CCNNNNNNNGG 1 cut(s) 346
BseMII CTCAG 2 cut(s) 42, 690
BseNI ACTGG 2 cut(s) 556, 748
BseXI GCAGC 2 cut(s) 82, 363
BsiHKAI GWGCWC 1 cut(s) 535
BslI CCNNNNNNNGG 1 cut(s) 346
BsmAI GTCTC 2 cut(s) 393, 738
BsmI GAATGC 1 cut(s) 641
Bso31I GGTCTC 1 cut(s) 738
Bsp1286I GDGCHC 1 cut(s) 535
Bsp143I GATC 5 cut(s) 302, 396, 514, 646, 736
Bsp1720I GCTNAGC 1 cut(s) 39
BspCNI CTCAG 2 cut(s) 43, 691
BspHI TCATGA 1 cut(s) 715
BspPI GGATC 2 cut(s) 509, 641
BspTNI GGTCTC 1 cut(s) 738
BsrI ACTGG 2 cut(s) 556, 748
BssMI GATC 5 cut(s) 302, 396, 514, 646, 736
Bst4CI ACNGT 1 cut(s) 387
BstC8I GCNNGC 2 cut(s) 100, 535
BstDEI CTNAG 6 cut(s) 39, 51, 299, 632, 699, 740
BstKTI GATC 5 cut(s) 305, 399, 517, 649, 739
BstMAI GTCTC 2 cut(s) 393, 738
BstMBI GATC 5 cut(s) 302, 396, 514, 646, 736
BstMWI GCNNNNNNNGC 2 cut(s) 284, 293
BstNSI RCATGY 2 cut(s) 47, 138
BstV1I GCAGC 2 cut(s) 82, 363
Cac8I GCNNGC 2 cut(s) 100, 535
CciI TCATGA 1 cut(s) 715
Cfr13I GGNCC 1 cut(s) 337
Csp6I GTAC 1 cut(s) 549
CviAII CATG 4 cut(s) 44, 135, 238, 716
CviJI RGCY 6 cut(s) 125, 152, 158, 278, 296, 698
CviKI_1 RGCY 6 cut(s) 125, 152, 158, 278, 296, 698
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 6 cut(s) 39, 51, 299, 632, 699, 740
DpnI GATC 5 cut(s) 304, 398, 516, 648, 738
DpnII GATC 5 cut(s) 302, 396, 514, 646, 736
Eco31I GGTCTC 1 cut(s) 738
Eco47I GGWCC 1 cut(s) 337
FaeI CATG 4 cut(s) 47, 138, 241, 719
FatI CATG 4 cut(s) 43, 134, 237, 715
FauNDI CATATG 1 cut(s) 540
Fnu4HI GCNGC 2 cut(s) 96, 377
Fsp4HI GCNGC 2 cut(s) 96, 377
FspBI CTAG 6 cut(s) 9, 114, 219, 416, 423, 480
GluI GCNGC 2 cut(s) 96, 377
GsuI CTGGAG 2 cut(s) 174, 504
Hin1II CATG 4 cut(s) 47, 138, 241, 719
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 6 cut(s) 29, 252, 351, 412, 600, 628
Hpy166II GTNNAC 2 cut(s) 28, 251
Hpy188I TCNGA 2 cut(s) 52, 132
Hpy188III TCNNGA 6 cut(s) 68, 190, 392, 521, 625, 716
Hpy8I GTNNAC 2 cut(s) 28, 251
HpyAV CCTTC 2 cut(s) 424, 539
HpyCH4III ACNGT 1 cut(s) 387
HpyCH4V TGCA 4 cut(s) 138, 145, 379, 641
HpyF10VI GCNNNNNNNGC 2 cut(s) 284, 293
HpyF3I CTNAG 6 cut(s) 39, 51, 299, 632, 699, 740
Hsp92II CATG 4 cut(s) 47, 138, 241, 719
Kzo9I GATC 5 cut(s) 302, 396, 514, 646, 736
LmnI GCTCC 3 cut(s) 122, 155, 754
LpnPI CCDG 7 cut(s) 84, 138, 534, 537, 638, 738, 761
Lsp1109I GCAGC 2 cut(s) 82, 363
MaeI CTAG 6 cut(s) 9, 114, 219, 416, 423, 480
MaeIII GTNAC 2 cut(s) 497, 580
MalI GATC 5 cut(s) 304, 398, 516, 648, 738
MboI GATC 5 cut(s) 302, 396, 514, 646, 736
MboII GAAGA 1 cut(s) 466
MfeI CAATTG 1 cut(s) 510
MhlI GDGCHC 1 cut(s) 535
MluCI AATT 7 cut(s) 90, 139, 203, 510, 574, 704, 770
MlyI GAGTC 2 cut(s) 23, 246
MmeI TCCRAC 2 cut(s) 315, 732
MnlI CCTC 4 cut(s) 268, 528, 660, 723
MseI TTAA 4 cut(s) 18, 56, 173, 441
MunI CAATTG 1 cut(s) 510
Mva1269I GAATGC 1 cut(s) 641
MwoI GCNNNNNNNGC 2 cut(s) 284, 293
NdeI CATATG 1 cut(s) 540
NdeII GATC 5 cut(s) 302, 396, 514, 646, 736
NlaIII CATG 4 cut(s) 47, 138, 241, 719
NmuCI GTSAC 2 cut(s) 497, 580
NspI RCATGY 2 cut(s) 47, 138
PagI TCATGA 1 cut(s) 715
PctI GAATGC 1 cut(s) 641
PfeI GAWTC 4 cut(s) 351, 412, 600, 628
PflMI CCANNNNNTGG 1 cut(s) 346
PkrI GCNGC 2 cut(s) 97, 378
PleI GAGTC 2 cut(s) 23, 246
PpsI GAGTC 2 cut(s) 23, 246
PshBI ATTAAT 1 cut(s) 18
PspPI GGNCC 1 cut(s) 337
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
SaqAI TTAA 4 cut(s) 18, 56, 173, 441
SatI GCNGC 2 cut(s) 96, 377
Sau3AI GATC 5 cut(s) 302, 396, 514, 646, 736
Sau96I GGNCC 1 cut(s) 337
SchI GAGTC 2 cut(s) 23, 246
SduI GDGCHC 1 cut(s) 535
SetI ASST 8 cut(s) 127, 154, 160, 167, 179, 286, 298, 550
SinI GGWCC 1 cut(s) 337
SmlI CTYRAG 1 cut(s) 390
SmoI CTYRAG 1 cut(s) 390
SpeI ACTAGT 2 cut(s) 8, 218
Sse9I AATT 7 cut(s) 90, 139, 203, 510, 574, 704, 770
SspMI CTAG 6 cut(s) 9, 114, 219, 416, 423, 480
TaaI ACNGT 1 cut(s) 387
TaqI TCGA 3 cut(s) 189, 645, 652
TasI AATT 7 cut(s) 90, 139, 203, 510, 574, 704, 770
TfiI GAWTC 4 cut(s) 351, 412, 600, 628
Tru1I TTAA 4 cut(s) 18, 56, 173, 441
Tru9I TTAA 4 cut(s) 18, 56, 173, 441
TseFI GTSAC 2 cut(s) 497, 580
TseI GCWGC 2 cut(s) 95, 376
Tsp45I GTSAC 2 cut(s) 497, 580
TspDTI ATGAA 4 cut(s) 215, 425, 443, 774
Van91I CCANNNNNTGG 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 337
VspI ATTAAT 1 cut(s) 18
XapI RAATTY 1 cut(s) 704
XceI RCATGY 2 cut(s) 47, 138
XspI CTAG 6 cut(s) 9, 114, 219, 416, 423, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.