Rroxscaffold_6G00404800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000122
Physical Location & Seq
Reverse (-)
27312933 .. 27315205
2273 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404800.1

Sequence Viewer

Length: 456 bp
ATGACAGATCACCGGAAACCCAAGAGGTACAAAAATCTTTCGTCATGGTTTACAAGTGATGCTCTATCAAGTGATAGTGTCGATGAGATTAGAAGTGGGAGTGGGAGTGGGATTAGAAGTGGTGCTCCATGGTTTATGTCCCATCCGTTGTATGTTTTGATCCAAAATAATAAAAGTGTGAGGATGAGCCTACCACTGGGTTCCAAACCTCCAAAAAAAATAAATTATTGTGCCCTTCTAATTAGCCTAGACAAGAATTGGATCCTGGTTCCGCCATCGCTTTTTACATGTCACCATGCTCCGAGAGGAGAGCCCGAACACAACTGCCAACAAAAGGTCGAAAAAAATCCGACCATAGACATGGTGCATGCAATTGATTCCAAAGATATTTTCATTGATGAAATGCTAGAATGGCACATACGTTTCGGTTCTTATATGACACTCGGTAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.18

Weight (kDa)

8.79

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 272
AclWI GGATC 3 cut(s) 154, 256, 269
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 2 cut(s) 196, 334
AflIII ACRYGT 1 cut(s) 287
AjnI CCWGG 1 cut(s) 264
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
Alw21I GWGCWC 1 cut(s) 127
AlwI GGATC 3 cut(s) 154, 256, 269
AsuHPI GGTGA 1 cut(s) 284
BaeGI GKGCMC 1 cut(s) 235
BamHI GGATCC 1 cut(s) 261
BanII GRGCYC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 127
BccI CCATC 2 cut(s) 150, 283
BciT130I CCWGG 1 cut(s) 266
BfaI CTAG 2 cut(s) 248, 407
Bme1390I CCNGG 1 cut(s) 266
BmiI GGNNCC 3 cut(s) 202, 263, 270
BmrFI CCNGG 1 cut(s) 266
BmrI ACTGGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 49
BmuI ACTGGG 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 128
BsaWI WCCGGW 1 cut(s) 12
BsaXI ACNNNNNCTCC 2 cut(s) 91, 121
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 334
Bse1I ACTGG 1 cut(s) 201
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 128
BseGI GGATG 2 cut(s) 142, 189
BseLI CCNNNNNNNGG 2 cut(s) 196, 334
BseNI ACTGG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 321
BseSI GKGCMC 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 127
BsiSI CCGG 1 cut(s) 13
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 2 cut(s) 196, 334
BsmFI GGGAC 1 cut(s) 124
Bsp1286I GDGCHC 3 cut(s) 127, 235, 315
Bsp143I GATC 3 cut(s) 7, 159, 261
Bsp19I CCATGG 1 cut(s) 128
BspACI CCGC 1 cut(s) 272
BspLI GGNNCC 3 cut(s) 202, 263, 270
BspPI GGATC 3 cut(s) 154, 256, 269
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 128
BssMI GATC 3 cut(s) 7, 159, 261
BssT1I CCWWGG 1 cut(s) 128
Bst2UI CCWGG 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 369
BstDSI CCRYGG 1 cut(s) 128
BstF5I GGATG 2 cut(s) 142, 189
BstKTI GATC 3 cut(s) 10, 162, 264
BstMBI GATC 3 cut(s) 7, 159, 261
BstMWI GCNNNNNNNGC 1 cut(s) 412
BstNI CCWGG 1 cut(s) 266
BstNSI RCATGY 2 cut(s) 291, 371
BstSCI CCNGG 1 cut(s) 264
BstSLI GKGCMC 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 261
BstXI CCANNNNNNTGG 1 cut(s) 361
BstYI RGATCY 1 cut(s) 261
BtgI CCRYGG 1 cut(s) 128
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 142, 189
BtsIMutI CAGTG 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 369
Csp6I GTAC 1 cut(s) 28
CviAII CATG 6 cut(s) 45, 129, 288, 296, 361, 368
CviJI RGCY 3 cut(s) 189, 246, 313
CviKI_1 RGCY 3 cut(s) 189, 246, 313
CviQI GTAC 1 cut(s) 28
DpnI GATC 3 cut(s) 9, 161, 263
DpnII GATC 3 cut(s) 7, 159, 261
EciI GGCGGA 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 128
Eco24I GRGCYC 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 315
ErhI CCWWGG 1 cut(s) 128
FaeI CATG 6 cut(s) 48, 132, 291, 299, 364, 371
FaqI GGGAC 1 cut(s) 124
FatI CATG 6 cut(s) 44, 128, 287, 295, 360, 367
FokI GGATG 2 cut(s) 129, 196
FriOI GRGCYC 1 cut(s) 315
FspBI CTAG 2 cut(s) 248, 407
HapII CCGG 1 cut(s) 13
Hin1II CATG 6 cut(s) 48, 132, 291, 299, 364, 371
HinfI GANTC 1 cut(s) 377
HpaII CCGG 1 cut(s) 13
HphI GGTGA 1 cut(s) 284
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 2 cut(s) 303, 351
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 421
HpyCH4V TGCA 2 cut(s) 367, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 412
HpySE526I ACGT 1 cut(s) 421
Hsp92II CATG 6 cut(s) 48, 132, 291, 299, 364, 371
Kzo9I GATC 3 cut(s) 7, 159, 261
LmnI GCTCC 2 cut(s) 130, 304
LpnPI CCDG 4 cut(s) 26, 182, 251, 278
LweI GCATC 1 cut(s) 49
MaeI CTAG 2 cut(s) 248, 407
MaeII ACGT 1 cut(s) 421
MaeIII GTNAC 1 cut(s) 290
MalI GATC 3 cut(s) 9, 161, 263
MboI GATC 3 cut(s) 7, 159, 261
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 1 cut(s) 261
MhlI GDGCHC 3 cut(s) 127, 235, 315
MluCI AATT 4 cut(s) 223, 240, 256, 372
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 4 cut(s) 18, 174, 219, 299
MseI TTAA 1 cut(s) 454
MslI CAYNNNNRTG 1 cut(s) 359
MspI CCGG 1 cut(s) 13
MspR9I CCNGG 1 cut(s) 266
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 1 cut(s) 412
NcoI CCATGG 1 cut(s) 128
NdeII GATC 3 cut(s) 7, 159, 261
NlaIII CATG 6 cut(s) 48, 132, 291, 299, 364, 371
NlaIV GGNNCC 3 cut(s) 202, 263, 270
NmuCI GTSAC 1 cut(s) 290
NspI RCATGY 2 cut(s) 291, 371
PaeI GCATGC 1 cut(s) 371
PciI ACATGT 1 cut(s) 287
PfeI GAWTC 1 cut(s) 377
PscI ACATGT 1 cut(s) 287
Psp6I CCWGG 1 cut(s) 264
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 3 cut(s) 202, 263, 270
PsuI RGATCY 1 cut(s) 261
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
RseI CAYNNNNRTG 1 cut(s) 359
SaqAI TTAA 1 cut(s) 454
Sau3AI GATC 3 cut(s) 7, 159, 261
ScrFI CCNGG 1 cut(s) 266
SduI GDGCHC 3 cut(s) 127, 235, 315
SetI ASST 4 cut(s) 29, 211, 339, 424
SfaNI GCATC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 359
SphI GCATGC 1 cut(s) 371
Sse9I AATT 4 cut(s) 223, 240, 256, 372
SsiI CCGC 1 cut(s) 272
SspMI CTAG 2 cut(s) 248, 407
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 1 cut(s) 128
TaiI ACGT 1 cut(s) 424
TaqI TCGA 2 cut(s) 81, 339
TasI AATT 4 cut(s) 223, 240, 256, 372
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 1 cut(s) 454
Tru9I TTAA 1 cut(s) 454
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 2 cut(s) 382, 414
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 1 cut(s) 201
XceI RCATGY 2 cut(s) 291, 371
XspI CTAG 2 cut(s) 248, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.