Rw4G007300

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000122
Physical Location & Seq
Forward (+)
15273544 .. 15274887
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G007300.1

Sequence Viewer

Length: 1344 bp
ATGCAAAAATGGGATTTATTAAGAAATCCTACCAAACAAATTGAAACAATTTTTCAGTCAAAATCTAGTAAGGATATAGAGGACAATCGATTGAGGCTTAACGCTTCAATAGAAAGTGTAAGATTGCTAGCTAATCAAGGAGCTGCTTTTAGAGGCCATGATGAAACTGAAAACTCATTGAATGCGAGATATTTTAGAGAAGTCATAAAATCTTTTTCAAGAATGAGTATTGAGGTTGAGAGAGTTGTTTTGGGAAATGCTCCCGGAAATGCCAAGTACATTAGTCCATCAATTCAAAAGCAACTTCTAAATATTCTTGGTAATAAAGTTAGGAACAAGATACATGAAGAAGTAGGAGATTCCAAATATTGTATTCTTGTTGATGAAGCAGTAGATATATCTAGTAAGGAACAAATGACCATTATTTTGAGGTTTGTTGATTGTCAAGGTATTATTCGAGAACGATTTTTTAAGATTGTGAGTGTTCCTAACACTACCTCACAAACTCTTAAAGATGAGATTTCTAAAGTACTTACTATGTACAATCTTCAAGTGAGAAATATGCGTGGTCAAGGATATGATGGTGCTAGCAATATGAGAGGTATTTATAATGGGTTACAAGCATTGTTTCTTGAAGAGTGTCCTTATGCTTATTATGTGCATTGTTTTACTCACCGCTTGCAATTGTCATTGAATGCTACAGCTAAAGGAGTGCCGGAGATTTGGCAATTTTTTTCAAGTTTAAGTTTAATTGTGAATTTTGTTGATTCTTCTGCTAAGCGTCATTCTGCATTAAAAGCTGTGAGAAAGGAAGAAATTGCAGATTTGGTAGCTTGTGGCCAACTTCAAACAGGTACTGGTGCTAATCAAGTTTGTACTTTGCAACGAGCTGCTGCTACACGTTGGAGCTCACATTTTCGTTCAATTAAGAGTTTGATTGAATTGTTTAGTTCAACCAAAAAAACTCTTAGTTATATGATTGAGCAAGGACCCAAGGAATTGCAAGGAGAAGCTGTGGCTGTTCTTAAAGCTATGATGTCTTTTGATTTTGTGTTATGCTTGCTTCTAATGCACAAATTGATGAAAATTACTGAAGTTCTTTGTCAGACATTGCAGCGAAAATCTCTTGACTTCGTACATGCTATGAAGTTTGTTGGACATACAAAATCATTTCTTCAAGAGATGAGAGAAGAAGGTTGGGATGACTTGGTAAGAAATGTTGAAACTTTTTGTGAGAAACATGATATTGATATGCCTGATATGAATGCTCGTTATAAGGATGGTACAGGTCGTCGTTGCCAACAAAAAGAGATTTCATTACAGTTGAGCATCATTACCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

447

Amino Acids

50.99

Weight (kDa)

8.94

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 14 - 205 2.3e-47 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 609, 1275
AciI CCGC 1 cut(s) 676
AcoI YGGCCR 1 cut(s) 838
AcsI RAATTY 1 cut(s) 757
AcuI CTGAAG 1 cut(s) 1113
AfaI GTAC 7 cut(s) 278, 531, 542, 856, 877, 1137, 1285
AflIII ACRYGT 1 cut(s) 899
AluBI AGCT 9 cut(s) 131, 143, 704, 800, 833, 890, 909, 1013, 1031
AluI AGCT 9 cut(s) 131, 143, 704, 800, 833, 890, 909, 1013, 1031
Alw21I GWGCWC 1 cut(s) 911
AlwNI CAGNNNCTG 1 cut(s) 857
AoxI GGCC 2 cut(s) 154, 838
ApeKI GCWGC 4 cut(s) 143, 890, 893, 1114
ApoI RAATTY 1 cut(s) 757
ArsI GACNNNNNNTTYG 2 cut(s) 409, 441
AspS9I GGNCC 1 cut(s) 989
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 665
AsuNHI GCTAGC 2 cut(s) 127, 587
AvaII GGWCC 1 cut(s) 989
BalI TGGCCA 1 cut(s) 840
BanII GRGCYC 1 cut(s) 911
Bbv12I GWGCWC 1 cut(s) 911
BbvI GCAGC 4 cut(s) 130, 877, 880, 1126
BccI CCATC 3 cut(s) 295, 575, 1274
BcnI CCSGG 1 cut(s) 264
BfaI CTAG 4 cut(s) 66, 128, 402, 588
BfmI CTRYAG 1 cut(s) 699
BisI GCNGC 4 cut(s) 144, 891, 894, 1115
BlpI GCTNAGC 1 cut(s) 777
BlsI GCNGC 4 cut(s) 145, 892, 895, 1116
BmcAI AGTACT 1 cut(s) 531
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 1 cut(s) 989
BmgT120I GGNCC 1 cut(s) 989
BmiI GGNNCC 1 cut(s) 991
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 1338
BmtI GCTAGC 2 cut(s) 131, 591
Bpu1102I GCTNAGC 1 cut(s) 777
BpuMI CCSGG 1 cut(s) 264
Bsa29I ATCGAT 1 cut(s) 88
BsaJI CCNNGG 1 cut(s) 993
BsaXI ACNNNNNCTCC 2 cut(s) 999, 1029
Bse1I ACTGG 1 cut(s) 862
Bse3DI GCAATG 1 cut(s) 1109
BseCI ATCGAT 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 993
BseGI GGATG 2 cut(s) 1207, 1285
BseMI GCAATG 1 cut(s) 1109
BseNI ACTGG 1 cut(s) 862
BseXI GCAGC 4 cut(s) 130, 877, 880, 1126
BshFI GGCC 2 cut(s) 156, 840
BshVI ATCGAT 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 911
BsiSI CCGG 2 cut(s) 264, 716
BsmI GAATGC 3 cut(s) 187, 700, 1270
BsnI GGCC 2 cut(s) 156, 840
Bsp1286I GDGCHC 1 cut(s) 911
Bsp1407I TGTACA 1 cut(s) 540
Bsp1720I GCTNAGC 1 cut(s) 777
BspACI CCGC 1 cut(s) 676
BspANI GGCC 2 cut(s) 156, 840
BspDI ATCGAT 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 991
BspOI GCTAGC 2 cut(s) 131, 591
BsrDI GCAATG 1 cut(s) 1109
BsrGI TGTACA 1 cut(s) 540
BsrI ACTGG 1 cut(s) 862
BssECI CCNNGG 1 cut(s) 993
BssT1I CCWWGG 1 cut(s) 993
Bst4CI ACNGT 1 cut(s) 1323
Bst6I CTCTTC 1 cut(s) 630
BstAUI TGTACA 1 cut(s) 540
BstC8I GCNNGC 4 cut(s) 129, 589, 680, 1061
BstDEI CTNAG 2 cut(s) 777, 968
BstF5I GGATG 2 cut(s) 1207, 1285
BstMWI GCNNNNNNNGC 2 cut(s) 797, 1069
BstNSI RCATGY 1 cut(s) 1142
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 699
BstV1I GCAGC 4 cut(s) 130, 877, 880, 1126
Bsu15I ATCGAT 1 cut(s) 88
BsuRI GGCC 2 cut(s) 156, 840
BsuTUI ATCGAT 1 cut(s) 88
BtsCI GGATG 2 cut(s) 1207, 1285
Cac8I GCNNGC 4 cut(s) 129, 589, 680, 1061
CaiI CAGNNNCTG 1 cut(s) 857
Cfr13I GGNCC 1 cut(s) 989
ClaI ATCGAT 1 cut(s) 88
CseI GACGC 1 cut(s) 770
Csp6I GTAC 7 cut(s) 277, 530, 541, 855, 876, 1136, 1284
CviAII CATG 4 cut(s) 158, 344, 1139, 1241
CviQI GTAC 7 cut(s) 277, 530, 541, 855, 876, 1136, 1284
DdeI CTNAG 2 cut(s) 777, 968
EaeI YGGCCR 1 cut(s) 838
Eam1104I CTCTTC 1 cut(s) 630
EarI CTCTTC 1 cut(s) 630
Ecl136II GAGCTC 1 cut(s) 909
Eco130I CCWWGG 1 cut(s) 993
Eco24I GRGCYC 1 cut(s) 911
Eco47I GGWCC 1 cut(s) 989
Eco53kI GAGCTC 1 cut(s) 909
Eco57I CTGAAG 1 cut(s) 1113
EcoICRI GAGCTC 1 cut(s) 909
EcoO109I RGGNCCY 1 cut(s) 989
EcoT14I CCWWGG 1 cut(s) 993
EcoT38I GRGCYC 1 cut(s) 911
ErhI CCWWGG 1 cut(s) 993
FaeI CATG 4 cut(s) 161, 347, 1142, 1244
FatI CATG 4 cut(s) 157, 343, 1138, 1240
Fnu4HI GCNGC 4 cut(s) 144, 891, 894, 1115
FokI GGATG 2 cut(s) 1214, 1292
FriOI GRGCYC 1 cut(s) 911
Fsp4HI GCNGC 4 cut(s) 144, 891, 894, 1115
FspBI CTAG 4 cut(s) 66, 128, 402, 588
GluI GCNGC 4 cut(s) 144, 891, 894, 1115
HaeIII GGCC 2 cut(s) 156, 840
HapII CCGG 2 cut(s) 264, 716
HgaI GACGC 1 cut(s) 770
Hin1II CATG 4 cut(s) 161, 347, 1142, 1244
HinfI GANTC 2 cut(s) 359, 767
HpaII CCGG 2 cut(s) 264, 716
HphI GGTGA 1 cut(s) 665
Hpy188I TCNGA 1 cut(s) 1107
Hpy188III TCNNGA 5 cut(s) 219, 458, 632, 1127, 1178
Hpy99I CGWCG 1 cut(s) 1296
HpyAV CCTTC 1 cut(s) 1187
HpyCH4III ACNGT 1 cut(s) 1323
HpyCH4IV ACGT 1 cut(s) 901
HpyCH4V TGCA 9 cut(s) 4, 661, 682, 791, 821, 883, 1003, 1072, 1114
HpyF10VI GCNNNNNNNGC 2 cut(s) 797, 1069
HpyF3I CTNAG 2 cut(s) 777, 968
HpySE526I ACGT 1 cut(s) 901
Hsp92II CATG 4 cut(s) 161, 347, 1142, 1244
LmnI GCTCC 3 cut(s) 140, 265, 906
LpnPI CCDG 6 cut(s) 277, 729, 837, 843, 1269, 1272
Lsp1109I GCAGC 4 cut(s) 130, 877, 880, 1126
LweI GCATC 1 cut(s) 1338
MaeI CTAG 4 cut(s) 66, 128, 402, 588
MaeII ACGT 1 cut(s) 901
MaeIII GTNAC 1 cut(s) 615
MboII GAAGA 7 cut(s) 359, 539, 647, 762, 824, 1166, 1202
MfeI CAATTG 1 cut(s) 683
MhlI GDGCHC 1 cut(s) 911
MlsI TGGCCA 1 cut(s) 840
MluNI TGGCCA 1 cut(s) 840
MmeI TCCRAC 2 cut(s) 884, 1135
MnlI CCTC 7 cut(s) 73, 87, 146, 226, 423, 508, 593
Mox20I TGGCCA 1 cut(s) 840
MscI TGGCCA 1 cut(s) 840
MseI TTAA 9 cut(s) 20, 99, 471, 510, 743, 749, 794, 927, 1026
Msp20I TGGCCA 1 cut(s) 840
MspI CCGG 2 cut(s) 264, 716
MspR9I CCNGG 1 cut(s) 264
MunI CAATTG 1 cut(s) 683
Mva1269I GAATGC 3 cut(s) 187, 700, 1270
MwoI GCNNNNNNNGC 2 cut(s) 797, 1069
NciI CCSGG 1 cut(s) 264
NheI GCTAGC 2 cut(s) 127, 587
NlaIII CATG 4 cut(s) 161, 347, 1142, 1244
NlaIV GGNNCC 1 cut(s) 991
NspI RCATGY 1 cut(s) 1142
PctI GAATGC 3 cut(s) 187, 700, 1270
PfeI GAWTC 2 cut(s) 359, 767
PfoI TCCNGGA 1 cut(s) 262
PkrI GCNGC 4 cut(s) 145, 892, 895, 1116
PpuMI RGGWCCY 1 cut(s) 989
PsiI TTATAA 2 cut(s) 609, 1275
Psp124BI GAGCTC 1 cut(s) 911
Psp5II RGGWCCY 1 cut(s) 989
PspN4I GGNNCC 1 cut(s) 991
PspPI GGNCC 1 cut(s) 989
PspPPI RGGWCCY 1 cut(s) 989
PstNI CAGNNNCTG 1 cut(s) 857
RsaI GTAC 7 cut(s) 278, 531, 542, 856, 877, 1137, 1285
RsaNI GTAC 7 cut(s) 277, 530, 541, 855, 876, 1136, 1284
SacI GAGCTC 1 cut(s) 911
SaqAI TTAA 9 cut(s) 20, 99, 471, 510, 743, 749, 794, 927, 1026
SatI GCNGC 4 cut(s) 144, 891, 894, 1115
Sau96I GGNCC 1 cut(s) 989
ScaI AGTACT 1 cut(s) 531
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 911
SfaNI GCATC 1 cut(s) 1338
SfcI CTRYAG 1 cut(s) 699
SinI GGWCC 1 cut(s) 989
SsiI CCGC 1 cut(s) 676
SspI AATATT 2 cut(s) 313, 368
SspMI CTAG 4 cut(s) 66, 128, 402, 588
SstI GAGCTC 1 cut(s) 911
StyD4I CCNGG 1 cut(s) 262
StyI CCWWGG 1 cut(s) 993
TaaI ACNGT 1 cut(s) 1323
TaiI ACGT 1 cut(s) 904
TaqI TCGA 2 cut(s) 88, 457
TatI WGTACW 4 cut(s) 276, 529, 540, 875
TfiI GAWTC 2 cut(s) 359, 767
Tru1I TTAA 9 cut(s) 20, 99, 471, 510, 743, 749, 794, 927, 1026
Tru9I TTAA 9 cut(s) 20, 99, 471, 510, 743, 749, 794, 927, 1026
TseI GCWGC 4 cut(s) 143, 890, 893, 1114
TspDTI ATGAA 7 cut(s) 177, 360, 399, 1097, 1160, 1277, 1305
VpaK11BI GGWCC 1 cut(s) 989
XapI RAATTY 1 cut(s) 757
XceI RCATGY 1 cut(s) 1142
XspI CTAG 4 cut(s) 66, 128, 402, 588
ZrmI AGTACT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.