RchiOBHm_Chr4g0421421

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000122
Physical Location & Seq
Reverse (-)
47090399 .. 47091986
1588 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39107

Sequence Viewer

Length: 744 bp
ATGTCCAAACAATCTGGCATTTTGGATCATGTGGGAGGAGTTAATTCCCCACATAATACTTGCATGCATAAGTGGGATACACTAAGAAACTCATCTAAGCATACTGAAAGAGTGATTAGCACACAATCATCACAAGAAGTAGCAAGTAACCGACTTCGGCTTAATTCTACTATAGAGAGTGTAAGGTTGTTGGCAAATCAAGGATGTGCTTTTAGAGGTTATAATGAATCGGCTAATTCATCCAATGGTGGCAATTTCAATGCGGTTTTGCAAGCCTTTGGAAGAGTTAATATAGAAGTCCACAAAGTCTTACATAATGCTCCTGGGAATGCCAAGTATATTTCTCCAATTATTCAAAGACAAATCCTAAATATTCTTGGTAACAAAGTTAGAACCAAGATTCGTGAGGAAGTTGGAGATGCTAAATTTTGTATCCTTGTTGGTGAAGTGGTTGATGTGTGTAATAGAGAACAAATGGCTATCATTCTTCGATTTGTTGGTTGTGATGGGTTTATTAGAGAACGATTTTTCAAAGTTATTAGTGTTGCAGACACTTGTTCTCAAACTCTTAAAAATGAGATATCCAAAGTCCTTGCCCAATATGATCTTCAAGTAGAAAATATGTGTGGCCAAGGTTATGATGGTGCTAGCAACATGCGGGGTGAATTTAATGGTTTACAAACTTTGTTTCGTGAAGAGTGTCCATATGCATATTATGTGCATTGCTTTGCTCATCGCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

247

Amino Acids

27.66

Weight (kDa)

8.72

Isoelectric Point (pI)

52.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 9 - 225 1.2e-46 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 222, 742
AciI CCGC 2 cut(s) 263, 658
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 628
AcsI RAATTY 2 cut(s) 425, 665
AgsI TTSAA 4 cut(s) 259, 356, 532, 611
AjnI CCWGG 1 cut(s) 322
AjuI GAANNNNNNNTTGG 2 cut(s) 591, 623
AlwI GGATC 1 cut(s) 33
AoxI GGCC 1 cut(s) 628
ApoI RAATTY 2 cut(s) 425, 665
AsuHPI GGTGA 2 cut(s) 455, 674
AsuNHI GCTAGC 1 cut(s) 647
BalI TGGCCA 1 cut(s) 630
BccI CCATC 2 cut(s) 500, 635
BciT130I CCWGG 1 cut(s) 324
BciVI GTATCC 2 cut(s) 70, 443
BfaI CTAG 1 cut(s) 648
BfmI CTRYAG 1 cut(s) 171
BfuI GTATCC 2 cut(s) 70, 443
Bme1390I CCNGG 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 1 cut(s) 409
BmtI GCTAGC 1 cut(s) 651
BsaJI CCNNGG 2 cut(s) 323, 631
Bse3DI GCAATG 1 cut(s) 721
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 323, 631
BseGI GGATG 2 cut(s) 209, 239
BseMI GCAATG 1 cut(s) 721
BseRI GAGGAG 1 cut(s) 51
BshFI GGCC 1 cut(s) 630
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 1 cut(s) 630
Bsp143I GATC 2 cut(s) 25, 604
BspACI CCGC 2 cut(s) 263, 658
BspANI GGCC 1 cut(s) 630
BspOI GCTAGC 1 cut(s) 651
BspPI GGATC 1 cut(s) 33
BsrDI GCAATG 1 cut(s) 721
BssECI CCNNGG 2 cut(s) 323, 631
BssMI GATC 2 cut(s) 25, 604
BssT1I CCWWGG 1 cut(s) 631
Bst2UI CCWGG 1 cut(s) 324
Bst6I CTCTTC 2 cut(s) 277, 690
BstC8I GCNNGC 3 cut(s) 65, 273, 649
BstDEI CTNAG 2 cut(s) 83, 96
BstF5I GGATG 2 cut(s) 209, 239
BstKTI GATC 2 cut(s) 28, 607
BstMBI GATC 2 cut(s) 25, 604
BstNI CCWGG 1 cut(s) 324
BstNSI RCATGY 2 cut(s) 67, 658
BstSCI CCNGG 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 171
BsuI GTATCC 2 cut(s) 70, 443
BsuRI GGCC 1 cut(s) 630
BtgZI GCGATG 1 cut(s) 719
BtsCI GGATG 2 cut(s) 209, 239
Cac8I GCNNGC 3 cut(s) 65, 273, 649
CviAII CATG 3 cut(s) 29, 64, 655
CviJI RGCY 5 cut(s) 160, 233, 275, 479, 630
CviKI_1 RGCY 5 cut(s) 160, 233, 275, 479, 630
DdeI CTNAG 2 cut(s) 83, 96
DpnI GATC 2 cut(s) 27, 606
DpnII GATC 2 cut(s) 25, 604
EaeI YGGCCR 1 cut(s) 628
Eam1104I CTCTTC 2 cut(s) 277, 690
EarI CTCTTC 2 cut(s) 277, 690
Eco130I CCWWGG 1 cut(s) 631
Eco32I GATATC 1 cut(s) 582
EcoRII CCWGG 1 cut(s) 322
EcoRV GATATC 1 cut(s) 582
EcoT14I CCWWGG 1 cut(s) 631
EcoT22I ATGCAT 2 cut(s) 69, 712
ErhI CCWWGG 1 cut(s) 631
FaeI CATG 3 cut(s) 32, 67, 658
FatI CATG 3 cut(s) 28, 63, 654
FauI CCCGC 1 cut(s) 651
FauNDI CATATG 1 cut(s) 706
FokI GGATG 2 cut(s) 216, 226
FspBI CTAG 1 cut(s) 648
HaeIII GGCC 1 cut(s) 630
Hin1II CATG 3 cut(s) 32, 67, 658
HinfI GANTC 2 cut(s) 227, 400
HphI GGTGA 2 cut(s) 455, 674
Hpy166II GTNNAC 2 cut(s) 301, 677
Hpy188III TCNNGA 2 cut(s) 404, 692
Hpy8I GTNNAC 2 cut(s) 301, 677
HpyCH4V TGCA 6 cut(s) 63, 67, 271, 548, 710, 721
HpyF3I CTNAG 2 cut(s) 83, 96
Hsp92II CATG 3 cut(s) 32, 67, 658
Kzo9I GATC 2 cut(s) 25, 604
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 2 cut(s) 309, 336
LweI GCATC 1 cut(s) 409
MaeI CTAG 1 cut(s) 648
MaeIII GTNAC 2 cut(s) 146, 380
MalI GATC 2 cut(s) 27, 606
MboI GATC 2 cut(s) 25, 604
MboII GAAGA 4 cut(s) 294, 479, 599, 707
MlsI TGGCCA 1 cut(s) 630
MluCI AATT 7 cut(s) 43, 163, 235, 253, 348, 425, 665
MluNI TGGCCA 1 cut(s) 630
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 3 cut(s) 29, 209, 400
Mox20I TGGCCA 1 cut(s) 630
Mph1103I ATGCAT 2 cut(s) 69, 712
MscI TGGCCA 1 cut(s) 630
MseI TTAA 5 cut(s) 42, 162, 288, 570, 669
Msp20I TGGCCA 1 cut(s) 630
MspR9I CCNGG 1 cut(s) 324
Mva1269I GAATGC 1 cut(s) 334
MvaI CCWGG 1 cut(s) 324
NdeI CATATG 1 cut(s) 706
NdeII GATC 2 cut(s) 25, 604
NheI GCTAGC 1 cut(s) 647
NlaIII CATG 3 cut(s) 32, 67, 658
NsiI ATGCAT 2 cut(s) 69, 712
NspI RCATGY 2 cut(s) 67, 658
PaeI GCATGC 1 cut(s) 67
PctI GAATGC 1 cut(s) 334
PfeI GAWTC 2 cut(s) 227, 400
PsiI TTATAA 2 cut(s) 222, 742
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
SaqAI TTAA 5 cut(s) 42, 162, 288, 570, 669
Sau3AI GATC 2 cut(s) 25, 604
ScrFI CCNGG 1 cut(s) 324
SetI ASST 3 cut(s) 188, 220, 637
SfaNI GCATC 1 cut(s) 409
SfcI CTRYAG 1 cut(s) 171
SphI GCATGC 1 cut(s) 67
Sse9I AATT 7 cut(s) 43, 163, 235, 253, 348, 425, 665
SsiI CCGC 2 cut(s) 263, 658
SspI AATATT 1 cut(s) 373
SspMI CTAG 1 cut(s) 648
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 1 cut(s) 631
TaqI TCGA 1 cut(s) 490
TasI AATT 7 cut(s) 43, 163, 235, 253, 348, 425, 665
TfiI GAWTC 2 cut(s) 227, 400
Tru1I TTAA 5 cut(s) 42, 162, 288, 570, 669
Tru9I TTAA 5 cut(s) 42, 162, 288, 570, 669
TspDTI ATGAA 2 cut(s) 228, 240
XapI RAATTY 2 cut(s) 425, 665
XceI RCATGY 2 cut(s) 67, 658
XcmI CCANNNNNNNNNTGG 1 cut(s) 638
XspI CTAG 1 cut(s) 648
Zsp2I ATGCAT 2 cut(s) 69, 712
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.