FvH4_4g15271

Zinc finger MYM-type protein 1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
18894264 .. 18895751
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g15271.t1

Sequence Viewer

Length: 1320 bp
ATGGGTATTGTCCTACGATTTGTTGATTGCAAAGGCTTTGTGAGGGAGCAGTTCTTTGGTATTGTGAATGTTGCTGACACAAAAGCTCAAACTCTTAAAGATGAGGTATGCAAGGTGTTAGCAGAAGAAGTTAGAGTTGTTTACAGATTTTTTTCAATGCTGATTAAGATTGTGAATTTCGTTGGTGGTTCTACCAAGCGTAGTACAGAGTTAAAACTGACAAGAGAAGCTGAAATTGAAGAGTTGTTGGATGCTGGATTGGTTGAGACAGGAAAAGGAGCTAATCAAACTCTTTGTTTACAGAGACCTGGAACCACTCGATGGGGAAGTCATTTTAAGTCTGTTAATAGTTTGATTGAATTATTCAGCTCAACCAAGCTCGTGGTGGAGAACTTAAAGGACAATGGACACACTAGACAAATTTGTGGTGAAGCTGAAGGTATATATCTCTCTATGACCTCTTTTGAGTTCGTGTTTGTCTTGCATTTTCTGAATAAAGTCATGGGCATCACTGATTTTCTTTGTCAAAAATTCCAAAAGAAGTCTGCAGATATTGTTAGTGCTCTTAATCATATTTCTACTACAAAAATGTTGCTTCAAAATTTTAGGGACAATGGTTGGGAGAATTTTCTTGAAACTGTGATATCATTTTGTGAAACTCATGAGATTGATGTGCCTGATATGAGTGCTCCACAAAGGGTGGGTACTGGTCGTTCTTGTCAACAAAATGATGACATTACAATAGAACACCACTATCATTTTGATATATTTAATGTTGTTATAGATAAACAGATGAAGGAGTTAGATGATAGATTTCCAGAGCAATCAAAGGAACTTCTCACTCTTACTGCAGCTTTAGATCCTCAAGATGATTTTAGGTGTTTTAAGAAGGATGATATTTGCAGTCTTGCTGAAAAGTTCTATCCCCAAGATTTTACTTCTGCTGAGTTGCATGCTTTAGATTTGCAATTGACATTTTATGCTGAAGATATTCATAGCCGTCCTGAGCTTCAGAATATTACTAGTCTTTCAGAATTATGTGTGAAATTGGTTGAAACAAGATTAGCAGAAGACTACCACTTGATTCATAGATTGCTTTGTTTGGTATTAACTCTTCCTGTCTCTACGGCATCGACAGAACGAGCATTTTCAGCTTTGAGAATTATTAAAAATCGACTTCGGAGCAAGATAGAAGAAGAGTTTCTTGATGATTGCATGTTGGTTCATATCGAAAGACAATTTGCTGATAGTATTGACAATGAGTCAAGTATTGATGAATTTGCTACAAAGCCTCGTAGAGTACAGCTTAAGATTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

440

Amino Acids

50.36

Weight (kDa)

5.42

Isoelectric Point (pI)

42.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 357 - 408 2.5e-07 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 321
AclWI GGATC 1 cut(s) 854
AcsI RAATTY 6 cut(s) 175, 420, 530, 601, 625, 1277
AcuI CTGAAG 3 cut(s) 456, 995, 1005
AfaI GTAC 3 cut(s) 205, 706, 1302
AfiI CCNNNNNNNGG 1 cut(s) 321
AflII CTTAAG 1 cut(s) 1307
AgsI TTSAA 6 cut(s) 156, 239, 359, 599, 635, 1055
AhdI GACNNNNNGTC 1 cut(s) 1261
AhlI ACTAGT 1 cut(s) 1022
AjnI CCWGG 1 cut(s) 307
Alw21I GWGCWC 2 cut(s) 565, 691
Alw26I GTCTC 3 cut(s) 260, 298, 1126
AlwI GGATC 1 cut(s) 854
ApeKI GCWGC 1 cut(s) 851
ApoI RAATTY 6 cut(s) 175, 420, 530, 601, 625, 1277
Asp700I GAANNNNTTC 2 cut(s) 990, 1200
AsuHPI GGTGA 1 cut(s) 440
BarI GAAGNNNNNNTAC 2 cut(s) 1098, 1130
BauI CACGAG 1 cut(s) 380
BbsI GAAGAC 1 cut(s) 1077
Bbv12I GWGCWC 2 cut(s) 565, 691
BbvI GCAGC 1 cut(s) 863
BccI CCATC 1 cut(s) 315
BceAI ACGGC 2 cut(s) 984, 1143
BciT130I CCWGG 1 cut(s) 309
BcoDI GTCTC 3 cut(s) 260, 298, 1126
BcuI ACTAGT 1 cut(s) 1022
BfaI CTAG 2 cut(s) 414, 1023
BfmI CTRYAG 2 cut(s) 546, 849
BfrI CTTAAG 1 cut(s) 1307
BisI GCNGC 1 cut(s) 852
BlsI GCNGC 1 cut(s) 853
Bme1390I CCNGG 1 cut(s) 309
BmeRI GACNNNNNGTC 1 cut(s) 1261
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 3 cut(s) 241, 516, 1139
BpiI GAAGAC 1 cut(s) 1077
Bpu10I CCTNAGC 1 cut(s) 1005
BpuEI CTTGAG 1 cut(s) 849
BsaI GGTCTC 1 cut(s) 298
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse1I ACTGG 1 cut(s) 712
BseBI CCWGG 1 cut(s) 309
BseGI GGATG 2 cut(s) 256, 898
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMII CTCAG 2 cut(s) 936, 996
BseNI ACTGG 1 cut(s) 712
BseXI GCAGC 1 cut(s) 863
BsiHKAI GWGCWC 2 cut(s) 565, 691
BslFI GGGAC 1 cut(s) 623
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 3 cut(s) 260, 298, 1126
BsmFI GGGAC 1 cut(s) 623
Bso31I GGTCTC 1 cut(s) 298
Bsp1286I GDGCHC 2 cut(s) 565, 691
Bsp143I GATC 1 cut(s) 859
BspCNI CTCAG 2 cut(s) 937, 997
BspHI TCATGA 1 cut(s) 661
BspLI GGNNCC 1 cut(s) 313
BspMAI CTGCAG 2 cut(s) 550, 853
BspPI GGATC 1 cut(s) 854
BspTI CTTAAG 1 cut(s) 1307
BspTNI GGTCTC 1 cut(s) 298
BsrI ACTGG 1 cut(s) 712
BssMI GATC 1 cut(s) 859
BssSI CACGAG 1 cut(s) 380
Bst2BI CACGAG 1 cut(s) 380
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 640
Bst6I CTCTTC 3 cut(s) 234, 1119, 1191
BstAFI CTTAAG 1 cut(s) 1307
BstC8I GCNNGC 1 cut(s) 954
BstDEI CTNAG 2 cut(s) 945, 1005
BstF5I GGATG 2 cut(s) 256, 898
BstKTI GATC 1 cut(s) 862
BstMAI GTCTC 3 cut(s) 260, 298, 1126
BstMBI GATC 1 cut(s) 859
BstMWI GCNNNNNNNGC 1 cut(s) 1151
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 2 cut(s) 956, 1219
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 2 cut(s) 546, 849
BstV1I GCAGC 1 cut(s) 863
BstV2I GAAGAC 1 cut(s) 1077
BstX2I RGATCY 1 cut(s) 859
BstXI CCANNNNNNTGG 1 cut(s) 382
BstYI RGATCY 1 cut(s) 859
BtsCI GGATG 2 cut(s) 256, 898
BtsIMutI CAGTG 1 cut(s) 510
Cac8I GCNNGC 1 cut(s) 954
CciI TCATGA 1 cut(s) 661
Csp6I GTAC 3 cut(s) 204, 705, 1301
CviAII CATG 4 cut(s) 502, 662, 953, 1216
CviQI GTAC 3 cut(s) 204, 705, 1301
DdeI CTNAG 2 cut(s) 945, 1005
DpnI GATC 1 cut(s) 861
DpnII GATC 1 cut(s) 859
DriI GACNNNNNGTC 1 cut(s) 1261
Eam1104I CTCTTC 3 cut(s) 234, 1119, 1191
Eam1105I GACNNNNNGTC 1 cut(s) 1261
EarI CTCTTC 3 cut(s) 234, 1119, 1191
Eco31I GGTCTC 1 cut(s) 298
Eco32I GATATC 1 cut(s) 645
Eco57I CTGAAG 3 cut(s) 456, 995, 1005
EcoRII CCWGG 1 cut(s) 307
EcoRV GATATC 1 cut(s) 645
FaeI CATG 4 cut(s) 505, 665, 956, 1219
FalI AAGNNNNNCTT 2 cut(s) 1188, 1220
FaqI GGGAC 1 cut(s) 623
FatI CATG 4 cut(s) 501, 661, 952, 1215
Fnu4HI GCNGC 1 cut(s) 852
FokI GGATG 2 cut(s) 263, 905
Fsp4HI GCNGC 1 cut(s) 852
FspBI CTAG 2 cut(s) 414, 1023
GluI GCNGC 1 cut(s) 852
Hin1II CATG 4 cut(s) 505, 665, 956, 1219
HincII GTYRAC 1 cut(s) 722
HindII GTYRAC 1 cut(s) 722
HinfI GANTC 2 cut(s) 1084, 1262
HphI GGTGA 1 cut(s) 440
Hpy166II GTNNAC 3 cut(s) 142, 299, 722
Hpy188I TCNGA 4 cut(s) 492, 1014, 1033, 1182
Hpy188III TCNNGA 6 cut(s) 632, 662, 818, 866, 1004, 1205
Hpy8I GTNNAC 3 cut(s) 142, 299, 722
HpyAV CCTTC 3 cut(s) 431, 790, 883
HpyCH4III ACNGT 1 cut(s) 640
HpyCH4V TGCA 9 cut(s) 30, 111, 484, 548, 851, 903, 952, 967, 1215
HpyF10VI GCNNNNNNNGC 1 cut(s) 1151
HpyF3I CTNAG 2 cut(s) 945, 1005
Hsp92II CATG 4 cut(s) 505, 665, 956, 1219
Kzo9I GATC 1 cut(s) 859
LmnI GCTCC 4 cut(s) 46, 278, 694, 1182
LpnPI CCDG 9 cut(s) 240, 255, 294, 321, 690, 693, 831, 1017, 1131
Lsp1109I GCAGC 1 cut(s) 863
LweI GCATC 3 cut(s) 241, 516, 1139
MaeI CTAG 2 cut(s) 414, 1023
MalI GATC 1 cut(s) 861
MboI GATC 1 cut(s) 859
MboII GAAGA 7 cut(s) 137, 251, 998, 1082, 1106, 1205, 1208
MfeI CAATTG 1 cut(s) 968
MflI RGATCY 1 cut(s) 859
MhlI GDGCHC 2 cut(s) 565, 691
MlyI GAGTC 1 cut(s) 1271
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 5 cut(s) 36, 97, 469, 873, 1302
MroXI GAANNNNTTC 2 cut(s) 990, 1200
MspCI CTTAAG 1 cut(s) 1307
MspR9I CCNGG 1 cut(s) 309
MunI CAATTG 1 cut(s) 968
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 1 cut(s) 1151
NdeII GATC 1 cut(s) 859
NlaIII CATG 4 cut(s) 505, 665, 956, 1219
NlaIV GGNNCC 1 cut(s) 313
NspI RCATGY 2 cut(s) 956, 1219
PaeI GCATGC 1 cut(s) 956
PagI TCATGA 1 cut(s) 661
PdmI GAANNNNTTC 2 cut(s) 990, 1200
PfeI GAWTC 1 cut(s) 1084
PflMI CCANNNNNTGG 1 cut(s) 321
PkrI GCNGC 1 cut(s) 853
PleI GAGTC 1 cut(s) 1270
PpsI GAGTC 1 cut(s) 1270
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 313
PsrI GAACNNNNNNTAC 2 cut(s) 697, 729
PstI CTGCAG 2 cut(s) 550, 853
PsuI RGATCY 1 cut(s) 859
RsaI GTAC 3 cut(s) 205, 706, 1302
RsaNI GTAC 3 cut(s) 204, 705, 1301
SatI GCNGC 1 cut(s) 852
Sau3AI GATC 1 cut(s) 859
SchI GAGTC 1 cut(s) 1271
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 2 cut(s) 565, 691
SfaNI GCATC 3 cut(s) 241, 516, 1139
SfcI CTRYAG 2 cut(s) 546, 849
SmlI CTYRAG 2 cut(s) 864, 1307
SmoI CTYRAG 2 cut(s) 864, 1307
SpeI ACTAGT 1 cut(s) 1022
SphI GCATGC 1 cut(s) 956
SspI AATATT 1 cut(s) 1018
SspMI CTAG 2 cut(s) 414, 1023
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 1 cut(s) 640
TaqI TCGA 4 cut(s) 319, 1133, 1174, 1230
TatI WGTACW 2 cut(s) 203, 1300
TfiI GAWTC 1 cut(s) 1084
TscAI CASTG 1 cut(s) 517
TseI GCWGC 1 cut(s) 851
TspDTI ATGAA 5 cut(s) 809, 983, 1076, 1214, 1290
TspRI CASTG 1 cut(s) 517
Van91I CCANNNNNTGG 1 cut(s) 321
Vha464I CTTAAG 1 cut(s) 1307
XapI RAATTY 6 cut(s) 175, 420, 530, 601, 625, 1277
XceI RCATGY 2 cut(s) 956, 1219
XcmI CCANNNNNNNNNTGG 1 cut(s) 382
XmnI GAANNNNTTC 2 cut(s) 990, 1200
XspI CTAG 2 cut(s) 414, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.