Rw2G016850

Zinc finger MYM-type protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
20380415 .. 20381668
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G016850.1

Sequence Viewer

Length: 1254 bp
ATGTCCAAACAATCTCATGTGGGAGGCGTTGATTCCCCACATAATACTTGCATGCATAAGTGGGATACACTAAGAAACCCATCTAAGCATATTGAAAGAGTGATTAGCACACAATCATCACAAGAAGTAGCAAATAACCGACTTCGGCTTAATTCTACTATAGAGAGTGTAAGGTTGTTGGCAAACCAAGGATGTGCTTTTAGAGGTCATGATGAATCGGCTAATTCATCCAATGGTGGCAATTTCAATGCGGTTTTGCAAGCCTTTGGAAGAGTTAATTTAGAAGTCCACAAAGTCTTACATAATGCTCCTGGGAATGCTAAGTATATTTCTCCAATTATTCAAAGACAAATCCTAAATATTCTTGGTAACAAAGTTAGAACCAAGATTCATGAGGAAGTGGGAGATGCTAAATTTTGTATCCTTGTTGATGAACCGGTTGATGTGTCTAATAGAGAAAAAATGGCTATTATTCTTCGATTTGTTGATTGTGATGGGTTTATTAGAGAACGATTTTTCAAAGGTATTAGTGTTGCAGACACTTGTTCTCAAACTCTTAAAAATGAGATATCCAAAGTCCTTGCCCAATATGATCTTCAAGTAGAAAATATGCGTGGCCAAGGTTATGATGGTGCTAGCAACATGCGGGGTGAATTTAATGGTTTACAAGCTTTGTTTCGTGAAGAGTGTCCATATGCATATTATGTGCATTGCTTTGCTCATCGCTTACAATTGACTTTAAATGCCGCAACTAAAGGAGTGCATGATATTTGGCAATTCTTTTCAACTCTAAATGTGATTGTTAATTTTGTTGATTCTTCTGCAAAACGGCATTCAGCATTAAGAGTCATCAGAGAAGAAGAAATTGCAGATTTAGTGGCTGCAGGTACCCTTGAGACAGGTACAGGGGCTAATCAAACTTGCACTTTGCAACGAGCAGGAGCTACTCGTTGGGGCTCACATCTTCGCTCTATTTCAAGTTTGATCAAGTTATCTGGAGCTACTAAAAAAACTCTTGCAGATTTGGTTGCAAATGGACCAAATAAATTACAAGGAGAAGCAAGGAGTGTAGGTAGGGTTATGAAGCGTTTTGATTTTGTGTTTTGCTTGCTTTTGATGCATGATGTCATGAAGATTACTGACTTTCTTTATCAATCATTGCAAAAAAAAAGCCATAGACATCTTGAATGCTCTAAATTTTCTTTCAATAACAAAATCAAAACTTCAAGATATGAGAGAAGATGGTTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

417

Amino Acids

46.9

Weight (kDa)

9.41

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 5 - 221 1.8e-49 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 875
Acc65I GGTACC 1 cut(s) 887
AccB1I GGYRCC 1 cut(s) 887
AciI CCGC 3 cut(s) 251, 646, 747
AcoI YGGCCR 1 cut(s) 616
AcsI RAATTY 3 cut(s) 413, 653, 1196
AfaI GTAC 2 cut(s) 889, 904
AgeI ACCGGT 1 cut(s) 436
AjnI CCWGG 1 cut(s) 310
AjuI GAANNNNNNNTTGG 2 cut(s) 579, 611
AluBI AGCT 3 cut(s) 671, 944, 1001
AluI AGCT 3 cut(s) 671, 944, 1001
Alw26I GTCTC 1 cut(s) 890
AoxI GGCC 1 cut(s) 616
ApeKI GCWGC 1 cut(s) 881
ApoI RAATTY 3 cut(s) 413, 653, 1196
AsiGI ACCGGT 1 cut(s) 436
Asp718I GGTACC 1 cut(s) 887
AspS9I GGNCC 1 cut(s) 1037
AsuHPI GGTGA 1 cut(s) 662
AsuNHI GCTAGC 1 cut(s) 635
AvaII GGWCC 1 cut(s) 1037
BalI TGGCCA 1 cut(s) 618
BanI GGYRCC 1 cut(s) 887
BanII GRGCYC 1 cut(s) 959
BbvI GCAGC 1 cut(s) 868
BccI CCATC 4 cut(s) 88, 488, 623, 1236
BceAI ACGGC 1 cut(s) 845
BciT130I CCWGG 1 cut(s) 312
BciVI GTATCC 2 cut(s) 58, 431
BclI TGATCA 1 cut(s) 984
BcoDI GTCTC 1 cut(s) 890
BfaI CTAG 1 cut(s) 636
BfmI CTRYAG 2 cut(s) 159, 882
BfuAI ACCTGC 1 cut(s) 875
BfuI GTATCC 2 cut(s) 58, 431
BisI GCNGC 2 cut(s) 747, 882
BlsI GCNGC 2 cut(s) 748, 883
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 1 cut(s) 1037
BmgT120I GGNCC 1 cut(s) 1037
BmiI GGNNCC 1 cut(s) 889
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 2 cut(s) 397, 1107
BmtI GCTAGC 1 cut(s) 639
BpmI CTGGAG 1 cut(s) 1017
BpuEI CTTGAG 1 cut(s) 914
BsaJI CCNNGG 3 cut(s) 187, 311, 619
BsaWI WCCGGW 1 cut(s) 436
BsaXI ACNNNNNCTCC 2 cut(s) 1057, 1087
Bse118I RCCGGY 1 cut(s) 436
Bse3DI GCAATG 2 cut(s) 709, 1157
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 187, 311, 619
BseGI GGATG 2 cut(s) 197, 227
BseMI GCAATG 2 cut(s) 709, 1157
BseXI GCAGC 1 cut(s) 868
BshFI GGCC 1 cut(s) 618
BshNI GGYRCC 1 cut(s) 887
BshTI ACCGGT 1 cut(s) 436
BsiSI CCGG 1 cut(s) 437
BsmAI GTCTC 1 cut(s) 890
BsmI GAATGC 3 cut(s) 322, 832, 1193
BsnI GGCC 1 cut(s) 618
Bsp1286I GDGCHC 1 cut(s) 959
Bsp143I GATC 2 cut(s) 592, 984
BspACI CCGC 3 cut(s) 251, 646, 747
BspANI GGCC 1 cut(s) 618
BspHI TCATGA 3 cut(s) 208, 391, 1128
BspLI GGNNCC 1 cut(s) 889
BspMAI CTGCAG 1 cut(s) 886
BspMI ACCTGC 1 cut(s) 875
BspOI GCTAGC 1 cut(s) 639
BspT107I GGYRCC 1 cut(s) 887
BsrDI GCAATG 2 cut(s) 709, 1157
BsrFI RCCGGY 1 cut(s) 436
BssAI RCCGGY 1 cut(s) 436
BssECI CCNNGG 3 cut(s) 187, 311, 619
BssMI GATC 2 cut(s) 592, 984
BssT1I CCWWGG 2 cut(s) 187, 619
Bst2UI CCWGG 1 cut(s) 312
Bst6I CTCTTC 2 cut(s) 265, 678
BstC8I GCNNGC 4 cut(s) 53, 261, 637, 1109
BstDEI CTNAG 3 cut(s) 71, 84, 321
BstF5I GGATG 2 cut(s) 197, 227
BstKTI GATC 2 cut(s) 595, 987
BstMAI GTCTC 1 cut(s) 890
BstMBI GATC 2 cut(s) 592, 984
BstMWI GCNNNNNNNGC 1 cut(s) 1117
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 2 cut(s) 55, 646
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 2 cut(s) 159, 882
BstV1I GCAGC 1 cut(s) 868
BsuI GTATCC 2 cut(s) 58, 431
BsuRI GGCC 1 cut(s) 618
BtgZI GCGATG 1 cut(s) 707
BtsCI GGATG 2 cut(s) 197, 227
BveI ACCTGC 1 cut(s) 875
Cac8I GCNNGC 4 cut(s) 53, 261, 637, 1109
CciI TCATGA 3 cut(s) 208, 391, 1128
Cfr10I RCCGGY 1 cut(s) 436
Cfr13I GGNCC 1 cut(s) 1037
Csp6I GTAC 2 cut(s) 888, 903
CspAI ACCGGT 1 cut(s) 436
CviAII CATG 8 cut(s) 17, 52, 209, 392, 643, 764, 1121, 1129
CviQI GTAC 2 cut(s) 888, 903
DdeI CTNAG 3 cut(s) 71, 84, 321
DpnI GATC 2 cut(s) 594, 986
DpnII GATC 2 cut(s) 592, 984
DraI TTTAAA 1 cut(s) 741
EaeI YGGCCR 1 cut(s) 616
Eam1104I CTCTTC 2 cut(s) 265, 678
EarI CTCTTC 2 cut(s) 265, 678
Eco130I CCWWGG 2 cut(s) 187, 619
Eco24I GRGCYC 1 cut(s) 959
Eco32I GATATC 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 1037
EcoRII CCWGG 1 cut(s) 310
EcoRV GATATC 1 cut(s) 570
EcoT14I CCWWGG 2 cut(s) 187, 619
EcoT22I ATGCAT 3 cut(s) 57, 700, 1122
EcoT38I GRGCYC 1 cut(s) 959
ErhI CCWWGG 2 cut(s) 187, 619
FaeI CATG 8 cut(s) 20, 55, 212, 395, 646, 767, 1124, 1132
FatI CATG 8 cut(s) 16, 51, 208, 391, 642, 763, 1120, 1128
FauI CCCGC 1 cut(s) 639
FauNDI CATATG 1 cut(s) 694
FbaI TGATCA 1 cut(s) 984
Fnu4HI GCNGC 2 cut(s) 747, 882
FokI GGATG 2 cut(s) 204, 214
FriOI GRGCYC 1 cut(s) 959
Fsp4HI GCNGC 2 cut(s) 747, 882
FspBI CTAG 1 cut(s) 636
GluI GCNGC 2 cut(s) 747, 882
GsuI CTGGAG 1 cut(s) 1017
HaeIII GGCC 1 cut(s) 618
HapII CCGG 1 cut(s) 437
Hin1II CATG 8 cut(s) 20, 55, 212, 395, 646, 767, 1124, 1132
HindIII AAGCTT 1 cut(s) 669
HinfI GANTC 5 cut(s) 32, 215, 388, 815, 846
HpaII CCGG 1 cut(s) 437
HphI GGTGA 1 cut(s) 662
Hpy166II GTNNAC 2 cut(s) 289, 665
Hpy188I TCNGA 1 cut(s) 854
Hpy188III TCNNGA 7 cut(s) 209, 392, 680, 996, 1129, 1184, 1227
Hpy8I GTNNAC 2 cut(s) 289, 665
HpyF10VI GCNNNNNNNGC 1 cut(s) 1117
HpyF3I CTNAG 3 cut(s) 71, 84, 321
Hsp92II CATG 8 cut(s) 20, 55, 212, 395, 646, 767, 1124, 1132
KpnI GGTACC 1 cut(s) 891
Ksp22I TGATCA 1 cut(s) 984
Kzo9I GATC 2 cut(s) 592, 984
LmnI GCTCC 3 cut(s) 313, 941, 998
LpnPI CCDG 8 cut(s) 297, 324, 450, 870, 885, 891, 924, 981
Lsp1109I GCAGC 1 cut(s) 868
LweI GCATC 2 cut(s) 397, 1107
MaeI CTAG 1 cut(s) 636
MaeIII GTNAC 1 cut(s) 368
MalI GATC 2 cut(s) 594, 986
MboI GATC 2 cut(s) 592, 984
MfeI CAATTG 1 cut(s) 731
MhlI GDGCHC 1 cut(s) 959
MlsI TGGCCA 1 cut(s) 618
MluNI TGGCCA 1 cut(s) 618
MlyI GAGTC 1 cut(s) 855
MnlI CCTC 3 cut(s) 17, 197, 388
Mox20I TGGCCA 1 cut(s) 618
Mph1103I ATGCAT 3 cut(s) 57, 700, 1122
MscI TGGCCA 1 cut(s) 618
MseI TTAA 7 cut(s) 150, 276, 558, 657, 740, 804, 842
Msp20I TGGCCA 1 cut(s) 618
MspI CCGG 1 cut(s) 437
MspR9I CCNGG 1 cut(s) 312
MunI CAATTG 1 cut(s) 731
Mva1269I GAATGC 3 cut(s) 322, 832, 1193
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 1117
NdeI CATATG 1 cut(s) 694
NdeII GATC 2 cut(s) 592, 984
NheI GCTAGC 1 cut(s) 635
NlaIII CATG 8 cut(s) 20, 55, 212, 395, 646, 767, 1124, 1132
NlaIV GGNNCC 1 cut(s) 889
NsiI ATGCAT 3 cut(s) 57, 700, 1122
NspI RCATGY 2 cut(s) 55, 646
PaeI GCATGC 1 cut(s) 55
PagI TCATGA 3 cut(s) 208, 391, 1128
PctI GAATGC 3 cut(s) 322, 832, 1193
PfeI GAWTC 4 cut(s) 32, 215, 388, 815
PinAI ACCGGT 1 cut(s) 436
PkrI GCNGC 2 cut(s) 748, 883
PleI GAGTC 1 cut(s) 854
PpsI GAGTC 1 cut(s) 854
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 889
PspPI GGNCC 1 cut(s) 1037
PstI CTGCAG 1 cut(s) 886
RsaI GTAC 2 cut(s) 889, 904
RsaNI GTAC 2 cut(s) 888, 903
SaqAI TTAA 7 cut(s) 150, 276, 558, 657, 740, 804, 842
SatI GCNGC 2 cut(s) 747, 882
Sau3AI GATC 2 cut(s) 592, 984
Sau96I GGNCC 1 cut(s) 1037
SchI GAGTC 1 cut(s) 855
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 959
SfaNI GCATC 2 cut(s) 397, 1107
SfcI CTRYAG 2 cut(s) 159, 882
SinI GGWCC 1 cut(s) 1037
SmlI CTYRAG 1 cut(s) 893
SmoI CTYRAG 1 cut(s) 893
SphI GCATGC 1 cut(s) 55
SsiI CCGC 3 cut(s) 251, 646, 747
SspI AATATT 1 cut(s) 361
SspMI CTAG 1 cut(s) 636
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 2 cut(s) 187, 619
TaqI TCGA 1 cut(s) 478
TauI GCSGC 1 cut(s) 749
TfiI GAWTC 4 cut(s) 32, 215, 388, 815
Tru1I TTAA 7 cut(s) 150, 276, 558, 657, 740, 804, 842
Tru9I TTAA 7 cut(s) 150, 276, 558, 657, 740, 804, 842
TseI GCWGC 1 cut(s) 881
TspDTI ATGAA 6 cut(s) 216, 228, 380, 447, 1097, 1145
VpaK11BI GGWCC 1 cut(s) 1037
XapI RAATTY 3 cut(s) 413, 653, 1196
XceI RCATGY 2 cut(s) 55, 646
XcmI CCANNNNNNNNNTGG 1 cut(s) 626
XspI CTAG 1 cut(s) 636
Zsp2I ATGCAT 3 cut(s) 57, 700, 1122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.