Rw4G009290

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000122
Physical Location & Seq
Forward (+)
20818033 .. 20820726
2694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G009290.1

Sequence Viewer

Length: 2277 bp
ATGTCGGATCATAATCGACCAACCAAGAAAGCAAAAACTCTTGATTCTTGGCTCAAGAAAATAAGAGAAGATCAAAATAGTAGTACACCCTTTGCATCTAATGAGCATCATCATGTCACTTCTCCTATACTGGAGCCTAGAGAGTTTGCTTCTACTGCTCCTGCATCCAATGCTGATAGTACAATACTCAATGAGCATCATCATGTCACTTCTCCTATACTCGAGCCTAGAGAGTTTGTTCCTACCGCTTCTGCATCCAATACTGAAAGTACAATACTCAATGAGAATCATCATGTCACATCTCCAATACCAGAGCCTAGAGAGTCTATTCCTACTCCTCTCACATCCAGTACTGATAGTGCAATACTCAATGAGCAACCTCACGTCACATCTCTGACACGTGAAGATATAGATTTTGTTGTTGGTGATTTGGAACGAGATCCAGGGAAACGAATTCAGATATATGAATATCCTGTTAATCAGCGTGACCACATTCGACGTGGGTATATAAAGTTGGGGCCATATCAACCTAAACTTTTTGAGTATCCAAGAGTTCGGTCAGGAACCCAATATCTTATGAACCGACAAAACAGAGAGGAAATTTTGAAGAATCGGCTGAGACTCAAGACAACCATTGAATCTGTTCGTTTTCTTGCATATCAAGGATGTGCTTTTCGGGGTCATGACGAATCTGTAGATTCAAGAAACCGTGGCAATTGTGTTGAACTTATAAAGCATACTGCGAAGTTCAGTGAAGAAGTTGCTAGAGTTGTATTAGAAAATGCCCCCAGAAATGCTACATACACCTCACCCACAATCCAAAAGCAGATTTTAAATGTTCTTGCAAACAAAGTGAGAAAGCTTATTTGTGGAGAAGTTGGGGATTCTAGTTTTTGTATTCTTGTTGATGAAGCACGAGACTCATCTCATAAAGAACAAATGGCCATTATTTTAAGATTTGTTGACAAAGAGGGTTTTCTAAGAGAACGGTTTTTTGATATTGTGATGGTTGAAGACACTACTGCGGAGACACTTCATCAAGAAATATCTAAAGTTCTTCTCCATCATAATTTGCAAGTTGAGAGAATGCGAGGTCAAGGGTATGACGGTGCTAGTAACATGAGAGGGGAATGGAATGGGCTACAAGCATTATTTTTGAGGGATTGCTCATCTGCATATTACATACATTGTTTTGCTCATCAGTTACAATTAGCCCTAGTTGCAGCTTCAAAAAAAGTTGATCCTATTTGGGTATTCTTTTCCTCCTTGAGTACGATTGTCAATGTTATTTGTGCTTCTCCAAAACGTCTCAATGAATTTCATGTTGCTCAAGTAATGCATATTACAGAATTGGTAGTAGCAGCTACTCGTTGGGGTTCTCATTTTACTTCTGTTTGTGACTTGATTGATAAGTATGATGCGACATGTACAGTTCTTGAATTTATTATGGATGATAAGTCCACAGAGTCTTTACGTGCGGAAGCTAGTGAACTGCAACATAAATCTCAAGATATCTTGAATGCTATGAATCTAGTGGAAGTTACAGTGAACTCTCTTCAAAAATTGAGAGAAAATGGTTGGGAAGATTTTCTTGAAAAAGTGGAATCTTTTTGCAAGCAACATGATATTGATATACCTACTATGGATGGTCAACACAGTGTGAGTACACGTCGCCGTTATTGTCAGCAAAGAAGCATAACAACTGAGCATCATTATCGTGTTGACATATTCTATGCTGCAATAGATTTTGAGTTGGTGGAGTTAAATGGCAGGTTTAGTGAAAGAGCAAAAGAACTTCTTATTCTTAGCTCATCTTTGGACCCTGTAGATGGTTTTAAGGCATTTAACATTGATAATATTTGCACACTTGCAGAAAAATTTTATCCTCAAGATTTCACAAGACAAGAGTTGCATATTTTGAGAAGCGAGCTGATCATTTATGAGTCTGATGTACCTCATCATGATGTGCTAAAGAATGTGACTACTCTTTCTGAGTTATGCAGAGGATTTTTTGAGACAAAAAGATCACAGAGATATCAAATGATTGATCGGTTGATTCGTCTTGTTTTGACTTTGCCGGTTTCTACAGCAACTACAGAAAGAGCATTTTCAGCTATGAAACGTGTCAAAACAATATTGCGCAACAAGATGGAGAATGACTTTTTGGCTGATAACTTGATTGTCCACATTGAAAAAGAGTTGGCTGAGAATTATGATACAGATTCAATAATTAAAGATTTTGCTTCTATTCAAGAGCGTAGGGTGCAGTTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

758

Amino Acids

87.18

Weight (kDa)

6.06

Isoelectric Point (pI)

49.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 199 - 380 7.1e-52 Domain of unknown function (DUF4371)
Dimer_Tnp_hAT PF05699 673 - 733 5.6e-09 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 731
Acc16I TGCGCA 1 cut(s) 2141
Acc36I ACCTGC 1 cut(s) 1761
AciI CCGC 3 cut(s) 246, 1025, 1478
AclWI GGATC 3 cut(s) 15, 434, 1235
AcoI YGGCCR 1 cut(s) 942
AcsI RAATTY 5 cut(s) 453, 600, 1316, 1439, 1877
AcvI CACGTG 1 cut(s) 401
AdeI CACNNNGTG 1 cut(s) 1660
AfaI GTAC 8 cut(s) 85, 181, 271, 352, 1273, 1429, 1666, 1953
AfiI CCNNNNNNNGG 1 cut(s) 1829
AflIII ACRYGT 4 cut(s) 398, 1424, 1667, 2122
AjiI CACGTC 3 cut(s) 385, 500, 1670
AjnI CCWGG 1 cut(s) 442
AjuI GAANNNNNNNTTGG 2 cut(s) 2147, 2179
AluBI AGCT 7 cut(s) 862, 1226, 1364, 1484, 1809, 1930, 2114
AluI AGCT 7 cut(s) 862, 1226, 1364, 1484, 1809, 1930, 2114
Alw26I GTCTC 5 cut(s) 613, 912, 1022, 1313, 2009
AlwI GGATC 3 cut(s) 15, 434, 1235
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 2 cut(s) 518, 942
ApeKI GCWGC 3 cut(s) 1223, 1361, 1736
ApoI RAATTY 5 cut(s) 453, 600, 1316, 1439, 1877
Asp700I GAANNNNTTC 2 cut(s) 642, 1587
AspLEI GCGC 1 cut(s) 2142
AspS9I GGNCC 2 cut(s) 518, 1819
AsuHPI GGTGA 2 cut(s) 437, 801
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 1819
BalI TGGCCA 1 cut(s) 944
BauI CACGAG 1 cut(s) 915
BbrPI CACGTG 1 cut(s) 401
BbsI GAAGAC 1 cut(s) 1020
BbvI GCAGC 3 cut(s) 1235, 1373, 1723
BccI CCATC 5 cut(s) 1000, 1071, 1640, 1823, 2143
BceAI ACGGC 1 cut(s) 1659
BcgI CGANNNNNNTGC 2 cut(s) 1697, 1731
BciT130I CCWGG 1 cut(s) 444
BciVI GTATCC 1 cut(s) 555
BclI TGATCA 1 cut(s) 1932
BcoDI GTCTC 5 cut(s) 613, 912, 1022, 1313, 2009
BfaI CTAG 9 cut(s) 138, 228, 318, 765, 888, 1113, 1217, 1485, 1532
BfmI CTRYAG 4 cut(s) 693, 1824, 2085, 2094
BfuAI ACCTGC 1 cut(s) 1761
BfuI GTATCC 1 cut(s) 555
BisI GCNGC 3 cut(s) 1224, 1362, 1737
BlsI GCNGC 3 cut(s) 1225, 1363, 1738
BmcAI AGTACT 1 cut(s) 352
Bme1390I CCNGG 1 cut(s) 444
Bme18I GGWCC 1 cut(s) 1819
BmeT110I CYCGRG 1 cut(s) 221
BmgBI CACGTC 3 cut(s) 385, 500, 1670
BmgT120I GGNCC 2 cut(s) 518, 1819
BmiI GGNNCC 4 cut(s) 135, 519, 565, 1821
BmrFI CCNGG 1 cut(s) 444
BmsI GCATC 7 cut(s) 104, 115, 173, 205, 263, 1408, 1717
BpiI GAAGAC 1 cut(s) 1020
BpmI CTGGAG 1 cut(s) 152
BpuEI CTTGAG 6 cut(s) 38, 608, 1288, 1314, 1491, 1872
BsaAI YACGTR 2 cut(s) 401, 1475
BsaBI GATNNNNATC 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 443, 709
Bsc4I CCNNNNNNNGG 1 cut(s) 1829
Bse118I RCCGGY 1 cut(s) 2077
Bse1I ACTGG 2 cut(s) 135, 348
Bse8I GATNNNNATC 1 cut(s) 12
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 2 cut(s) 443, 709
BseGI GGATG 6 cut(s) 164, 254, 344, 671, 1456, 1651
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 1829
BseMII CTCAG 4 cut(s) 608, 1695, 1983, 2196
BseNI ACTGG 2 cut(s) 135, 348
BseRI GAGGAG 1 cut(s) 327
BseXI GCAGC 3 cut(s) 1235, 1373, 1723
BshFI GGCC 2 cut(s) 520, 944
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 1 cut(s) 2078
BslI CCNNNNNNNGG 1 cut(s) 1829
BsmAI GTCTC 5 cut(s) 613, 912, 1022, 1313, 2009
BsmBI CGTCTC 1 cut(s) 1313
BsmI GAATGC 2 cut(s) 1092, 1525
BsnI GGCC 2 cut(s) 520, 944
BsoBI CYCGRG 1 cut(s) 221
Bsp1407I TGTACA 1 cut(s) 1427
Bsp143I GATC 7 cut(s) 7, 70, 439, 1240, 1932, 2024, 2047
BspACI CCGC 3 cut(s) 246, 1025, 1478
BspANI GGCC 2 cut(s) 520, 944
BspCNI CTCAG 4 cut(s) 609, 1696, 1984, 2197
BspHI TCATGA 2 cut(s) 682, 1960
BspLI GGNNCC 4 cut(s) 135, 519, 565, 1821
BspMI ACCTGC 1 cut(s) 1761
BspPI GGATC 3 cut(s) 15, 434, 1235
BsrFI RCCGGY 1 cut(s) 2077
BsrGI TGTACA 1 cut(s) 1427
BsrI ACTGG 2 cut(s) 135, 348
BssAI RCCGGY 1 cut(s) 2077
BssECI CCNNGG 2 cut(s) 443, 709
BssMI GATC 7 cut(s) 7, 70, 439, 1240, 1932, 2024, 2047
BssSI CACGAG 1 cut(s) 915
Bst2BI CACGAG 1 cut(s) 915
Bst2UI CCWGG 1 cut(s) 444
Bst4CI ACNGT 6 cut(s) 710, 990, 1109, 1432, 1546, 1658
Bst6I CTCTTC 1 cut(s) 1560
BstAPI GCANNNNNTGC 1 cut(s) 170
BstAUI TGTACA 1 cut(s) 1427
BstBAI YACGTR 2 cut(s) 401, 1475
BstC8I GCNNGC 2 cut(s) 1616, 1928
BstDEI CTNAG 6 cut(s) 617, 980, 1704, 1805, 1992, 2205
BstDSI CCRYGG 1 cut(s) 709
BstF5I GGATG 6 cut(s) 164, 254, 344, 671, 1456, 1651
BstHHI GCGC 1 cut(s) 2142
BstKTI GATC 7 cut(s) 10, 73, 442, 1243, 1935, 2027, 2050
BstMAI GTCTC 5 cut(s) 613, 912, 1022, 1313, 2009
BstMBI GATC 7 cut(s) 7, 70, 439, 1240, 1932, 2024, 2047
BstMWI GCNNNNNNNGC 5 cut(s) 155, 170, 1220, 2111, 2263
BstNI CCWGG 1 cut(s) 444
BstNSI RCATGY 1 cut(s) 1428
BstSCI CCNGG 1 cut(s) 442
BstSFI CTRYAG 4 cut(s) 693, 1824, 2085, 2094
BstV1I GCAGC 3 cut(s) 1235, 1373, 1723
BstV2I GAAGAC 1 cut(s) 1020
BstX2I RGATCY 1 cut(s) 439
BstYI RGATCY 1 cut(s) 439
BsuI GTATCC 1 cut(s) 555
BsuRI GGCC 2 cut(s) 520, 944
BtgI CCRYGG 1 cut(s) 709
BtrI CACGTC 3 cut(s) 385, 500, 1670
BtsCI GGATG 6 cut(s) 164, 254, 344, 671, 1456, 1651
BtsIMutI CAGTG 3 cut(s) 757, 1551, 1663
BveI ACCTGC 1 cut(s) 1761
Cac8I GCNNGC 2 cut(s) 1616, 1928
CciI TCATGA 2 cut(s) 682, 1960
CfoI GCGC 1 cut(s) 2142
Cfr10I RCCGGY 1 cut(s) 2077
Cfr13I GGNCC 2 cut(s) 518, 1819
Csp6I GTAC 8 cut(s) 84, 180, 270, 351, 1272, 1428, 1665, 1952
CviAII CATG 9 cut(s) 113, 203, 293, 683, 1120, 1322, 1425, 1622, 1961
CviQI GTAC 8 cut(s) 84, 180, 270, 351, 1272, 1428, 1665, 1952
DdeI CTNAG 6 cut(s) 617, 980, 1704, 1805, 1992, 2205
DpnI GATC 7 cut(s) 9, 72, 441, 1242, 1934, 2026, 2049
DpnII GATC 7 cut(s) 7, 70, 439, 1240, 1932, 2024, 2047
DraI TTTAAA 1 cut(s) 834
DraIII CACNNNGTG 1 cut(s) 1660
EaeI YGGCCR 1 cut(s) 942
Eam1104I CTCTTC 1 cut(s) 1560
EarI CTCTTC 1 cut(s) 1560
Eco32I GATATC 2 cut(s) 1513, 2036
Eco47I GGWCC 1 cut(s) 1819
Eco72I CACGTG 1 cut(s) 401
Eco88I CYCGRG 1 cut(s) 221
EcoRI GAATTC 1 cut(s) 453
EcoRII CCWGG 1 cut(s) 442
EcoRV GATATC 2 cut(s) 1513, 2036
EcoT22I ATGCAT 1 cut(s) 1341
Esp3I CGTCTC 1 cut(s) 1313
FaeI CATG 9 cut(s) 116, 206, 296, 686, 1123, 1325, 1428, 1625, 1964
FalI AAGNNNNNCTT 4 cut(s) 1575, 1607, 1782, 1814
FatI CATG 9 cut(s) 112, 202, 292, 682, 1119, 1321, 1424, 1621, 1960
FbaI TGATCA 1 cut(s) 1932
Fnu4HI GCNGC 3 cut(s) 1224, 1362, 1737
FokI GGATG 6 cut(s) 151, 241, 331, 678, 1463, 1658
Fsp4HI GCNGC 3 cut(s) 1224, 1362, 1737
FspBI CTAG 9 cut(s) 138, 228, 318, 765, 888, 1113, 1217, 1485, 1532
FspI TGCGCA 1 cut(s) 2141
GlaI GCGC 1 cut(s) 2141
GluI GCNGC 3 cut(s) 1224, 1362, 1737
GsuI CTGGAG 1 cut(s) 152
HaeIII GGCC 2 cut(s) 520, 944
HapII CCGG 1 cut(s) 2078
HhaI GCGC 1 cut(s) 2142
Hin1II CATG 9 cut(s) 116, 206, 296, 686, 1123, 1325, 1428, 1625, 1964
Hin6I GCGC 1 cut(s) 2140
HinP1I GCGC 1 cut(s) 2140
HincII GTYRAC 3 cut(s) 964, 1652, 1723
HindII GTYRAC 3 cut(s) 964, 1652, 1723
HindIII AAGCTT 1 cut(s) 860
HpaII CCGG 1 cut(s) 2078
HphI GGTGA 2 cut(s) 437, 801
Hpy166II GTNNAC 9 cut(s) 86, 964, 1461, 1490, 1549, 1652, 1667, 1723, 2185
Hpy188I TCNGA 5 cut(s) 7, 396, 459, 1948, 1993
Hpy8I GTNNAC 9 cut(s) 86, 964, 1461, 1490, 1549, 1652, 1667, 1723, 2185
Hpy99I CGWCG 2 cut(s) 501, 1674
HpyCH4III ACNGT 6 cut(s) 710, 990, 1109, 1432, 1546, 1658
HpyCH4IV ACGT 7 cut(s) 384, 400, 499, 1306, 1474, 1669, 2122
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 170, 1220, 2111, 2263
HpyF3I CTNAG 6 cut(s) 617, 980, 1704, 1805, 1992, 2205
HpySE526I ACGT 7 cut(s) 384, 400, 499, 1306, 1474, 1669, 2122
Hsp92II CATG 9 cut(s) 116, 206, 296, 686, 1123, 1325, 1428, 1625, 1964
HspAI GCGC 1 cut(s) 2140
Ksp22I TGATCA 1 cut(s) 1932
Kzo9I GATC 7 cut(s) 7, 70, 439, 1240, 1932, 2024, 2047
LmnI GCTCC 2 cut(s) 133, 163
Lsp1109I GCAGC 3 cut(s) 1235, 1373, 1723
LweI GCATC 7 cut(s) 104, 115, 173, 205, 263, 1408, 1717
MaeI CTAG 9 cut(s) 138, 228, 318, 765, 888, 1113, 1217, 1485, 1532
MaeII ACGT 7 cut(s) 384, 400, 499, 1306, 1474, 1669, 2122
MalI GATC 7 cut(s) 9, 72, 441, 1242, 1934, 2026, 2049
MboI GATC 7 cut(s) 7, 70, 439, 1240, 1932, 2024, 2047
MboII GAAGA 8 cut(s) 80, 416, 619, 767, 1025, 1049, 1547, 1595
MfeI CAATTG 1 cut(s) 715
MflI RGATCY 1 cut(s) 439
MlsI TGGCCA 1 cut(s) 944
MluNI TGGCCA 1 cut(s) 944
MlyI GAGTC 5 cut(s) 332, 615, 914, 1475, 1952
Mox20I TGGCCA 1 cut(s) 944
Mph1103I ATGCAT 1 cut(s) 1341
MroXI GAANNNNTTC 2 cut(s) 642, 1587
MscI TGGCCA 1 cut(s) 944
MseI TTAA 7 cut(s) 477, 833, 953, 1763, 1836, 1845, 2232
MslI CAYNNNNRTG 4 cut(s) 111, 201, 1716, 1962
Msp20I TGGCCA 1 cut(s) 944
MspI CCGG 1 cut(s) 2078
MspR9I CCNGG 1 cut(s) 444
MunI CAATTG 1 cut(s) 715
Mva1269I GAATGC 2 cut(s) 1092, 1525
MvaI CCWGG 1 cut(s) 444
MwoI GCNNNNNNNGC 5 cut(s) 155, 170, 1220, 2111, 2263
NdeII GATC 7 cut(s) 7, 70, 439, 1240, 1932, 2024, 2047
NlaIII CATG 9 cut(s) 116, 206, 296, 686, 1123, 1325, 1428, 1625, 1964
NlaIV GGNNCC 4 cut(s) 135, 519, 565, 1821
NmuCI GTSAC 7 cut(s) 115, 205, 295, 385, 485, 1397, 1978
NsbI TGCGCA 1 cut(s) 2141
NsiI ATGCAT 1 cut(s) 1341
NspI RCATGY 1 cut(s) 1428
PaeR7I CTCGAG 1 cut(s) 221
PagI TCATGA 2 cut(s) 682, 1960
PciI ACATGT 1 cut(s) 1424
PcsI WCGNNNNNNNCGW 1 cut(s) 2056
PctI GAATGC 2 cut(s) 1092, 1525
PdmI GAANNNNTTC 2 cut(s) 642, 1587
PkrI GCNGC 3 cut(s) 1225, 1363, 1738
PleI GAGTC 5 cut(s) 331, 615, 914, 1474, 1951
PmaCI CACGTG 1 cut(s) 401
PmlI CACGTG 1 cut(s) 401
PpsI GAGTC 5 cut(s) 331, 615, 914, 1474, 1951
Ppu21I YACGTR 2 cut(s) 401, 1475
PscI ACATGT 1 cut(s) 1424
PsiI TTATAA 1 cut(s) 731
Psp6I CCWGG 1 cut(s) 442
PspCI CACGTG 1 cut(s) 401
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 4 cut(s) 135, 519, 565, 1821
PspPI GGNCC 2 cut(s) 518, 1819
PspXI VCTCGAGB 1 cut(s) 221
PsuI RGATCY 1 cut(s) 439
RsaI GTAC 8 cut(s) 85, 181, 271, 352, 1273, 1429, 1666, 1953
RsaNI GTAC 8 cut(s) 84, 180, 270, 351, 1272, 1428, 1665, 1952
RseI CAYNNNNRTG 4 cut(s) 111, 201, 1716, 1962
SaqAI TTAA 7 cut(s) 477, 833, 953, 1763, 1836, 1845, 2232
SatI GCNGC 3 cut(s) 1224, 1362, 1737
Sau3AI GATC 7 cut(s) 7, 70, 439, 1240, 1932, 2024, 2047
Sau96I GGNCC 2 cut(s) 518, 1819
ScaI AGTACT 1 cut(s) 352
SchI GAGTC 5 cut(s) 332, 615, 914, 1475, 1952
ScrFI CCNGG 1 cut(s) 444
SfaNI GCATC 7 cut(s) 104, 115, 173, 205, 263, 1408, 1717
SfcI CTRYAG 4 cut(s) 693, 1824, 2085, 2094
Sfr274I CTCGAG 1 cut(s) 221
SinI GGWCC 1 cut(s) 1819
SlaI CTCGAG 1 cut(s) 221
SmiMI CAYNNNNRTG 4 cut(s) 111, 201, 1716, 1962
SmlI CTYRAG 7 cut(s) 53, 221, 623, 1267, 1329, 1506, 1887
SmoI CTYRAG 7 cut(s) 53, 221, 623, 1267, 1329, 1506, 1887
SsiI CCGC 3 cut(s) 246, 1025, 1478
SspI AATATT 2 cut(s) 1858, 2136
SspMI CTAG 9 cut(s) 138, 228, 318, 765, 888, 1113, 1217, 1485, 1532
StyD4I CCNGG 1 cut(s) 442
TaaI ACNGT 6 cut(s) 710, 990, 1109, 1432, 1546, 1658
TaiI ACGT 7 cut(s) 387, 403, 502, 1309, 1477, 1672, 2125
TaqI TCGA 3 cut(s) 16, 222, 496
TaqII GACCGA 1 cut(s) 546
TatI WGTACW 6 cut(s) 83, 179, 269, 350, 1427, 1664
Tru1I TTAA 7 cut(s) 477, 833, 953, 1763, 1836, 1845, 2232
Tru9I TTAA 7 cut(s) 477, 833, 953, 1763, 1836, 1845, 2232
TscAI CASTG 3 cut(s) 757, 1551, 1663
TseFI GTSAC 7 cut(s) 115, 205, 295, 385, 485, 1397, 1978
TseI GCWGC 3 cut(s) 1223, 1361, 1736
Tsp45I GTSAC 7 cut(s) 115, 205, 295, 385, 485, 1397, 1978
TspDTI ATGAA 8 cut(s) 480, 593, 924, 1025, 1310, 1329, 1541, 2132
TspRI CASTG 3 cut(s) 757, 1551, 1663
VpaK11BI GGWCC 1 cut(s) 1819
XapI RAATTY 5 cut(s) 453, 600, 1316, 1439, 1877
XceI RCATGY 1 cut(s) 1428
XcmI CCANNNNNNNNNTGG 1 cut(s) 497
XhoI CTCGAG 1 cut(s) 221
XmnI GAANNNNTTC 2 cut(s) 642, 1587
XspI CTAG 9 cut(s) 138, 228, 318, 765, 888, 1113, 1217, 1485, 1532
ZrmI AGTACT 1 cut(s) 352
Zsp2I ATGCAT 1 cut(s) 1341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.