Rmu_sc0004509.1_g000007

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004509.1
OG0000122
Physical Location & Seq
Reverse (-)
11070 .. 12203
1134 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004509.1_g000007.1.cds

Sequence Viewer

Length: 1134 bp
atgtcggatcaccggaaacccaagaggtacaaaaatatactgtcatggtttgcaaatgataatccatcaagtgatagtgtcgatgggagtgggagtgggagtagaaatgtgactgataattctgttaatgatgtccctttaaacccttctccatctattccactagaagagtgtcgtaatgaaagaattgagagagaaagttttgattttacttcccttgaacgtgatccaggaatacggcgtccaatatgcaagtatcctttgaatgagcgtgacaatattcgaagagcttatgtggtcttaggactgaatcaaccccacttaagtagttactcatcttcatttgacggagctcaaggtcaaagatttagtcccaagtggttcaaagaattgtcttggcttgagtattctgaagaattggacaaagcattttacttcctttgtttcttgtttgatagttatccatcccatcatccagcatttactgagcataggtttcaaggttggaagaatgttatgtcaaaaaaatctggcattctccatcacataggaggcataaattccgcacataatattgccatgcacaagtgggagtcactaagaaacccatctaagcatattgaaacagtgattagcacacaatcatcacaagaagtagcagataacctactccggcttattactactatagagagtgtaaggttgttggcacaccaaggatgtgcttttagaggccatgatgaatcggttatttcatgcaatggtggcaatttcaatgcggttgtgaattcgtttggaagaatgaatatagatattcgcaaagtcttacaaaatgctcctgggaaagctaagtatatttctcccattattcaaaaacaaattgcaaatatacttggtaacaaagttagaaccaacattcgggaggaagtgggagatgccaaattttgtatccttgttgatgaagcggttgatgtatctaatagggaacaaatggctatcattcttcgatttgttgattgtgataggtttattagagaacgttttttcaaagtgcttagtgtggcagacacttgttctcaaactctaaaagatgagatatccaaagtccttactcaatatgatcttcaagtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

377

Amino Acids

43.0

Weight (kDa)

8.07

Isoelectric Point (pI)

58.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 564, 779, 965
AclI AACGTT 1 cut(s) 1039
AclWI GGATC 2 cut(s) 15, 221
AcsI RAATTY 3 cut(s) 559, 787, 941
AcuI CTGAAG 1 cut(s) 432
AcyI GRCGYC 1 cut(s) 241
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 1 cut(s) 918
AflII CTTAAG 1 cut(s) 322
AgsI TTSAA 9 cut(s) 221, 265, 385, 500, 623, 775, 872, 1048, 1127
AjnI CCWGG 2 cut(s) 229, 838
AluBI AGCT 3 cut(s) 290, 353, 848
AluI AGCT 3 cut(s) 290, 353, 848
Alw21I GWGCWC 1 cut(s) 355
AlwI GGATC 2 cut(s) 15, 221
AoxI GGCC 1 cut(s) 733
ApoI RAATTY 3 cut(s) 559, 787, 941
ArsI GACNNNNNNTTYG 2 cut(s) 355, 387
AsuII TTCGAA 1 cut(s) 283
BanII GRGCYC 1 cut(s) 355
Bbv12I GWGCWC 1 cut(s) 355
BccI CCATC 7 cut(s) 73, 77, 160, 472, 477, 549, 616
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 2 cut(s) 231, 840
BciVI GTATCC 2 cut(s) 267, 959
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 687
BfrI CTTAAG 1 cut(s) 322
BfuI GTATCC 2 cut(s) 267, 959
Bme1390I CCNGG 2 cut(s) 231, 840
BmrFI CCNGG 2 cut(s) 231, 840
BmsI GCATC 1 cut(s) 925
Bpu14I TTCGAA 1 cut(s) 283
BpuEI CTTGAG 2 cut(s) 339, 422
BsaBI GATNNNNATC 1 cut(s) 459
BsaHI GRCGYC 1 cut(s) 241
BsaJI CCNNGG 2 cut(s) 715, 839
BsaWI WCCGGW 1 cut(s) 12
BsaXI ACNNNNNCTCC 4 cut(s) 79, 85, 109, 115
Bsc4I CCNNNNNNNGG 1 cut(s) 918
Bse3DI GCAATG 1 cut(s) 766
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 2 cut(s) 231, 840
BseDI CCNNGG 2 cut(s) 715, 839
BseGI GGATG 3 cut(s) 464, 472, 725
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 1 cut(s) 918
BseMI GCAATG 1 cut(s) 766
BseMII CTCAG 1 cut(s) 477
BshFI GGCC 1 cut(s) 735
BsiHKAI GWGCWC 1 cut(s) 355
BsiSI CCGG 2 cut(s) 13, 673
BslFI GGGAC 2 cut(s) 119, 357
BslI CCNNNNNNNGG 1 cut(s) 918
BsmFI GGGAC 2 cut(s) 119, 357
BsmI GAATGC 1 cut(s) 534
BsnI GGCC 1 cut(s) 735
Bsp119I TTCGAA 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 355
Bsp143I GATC 3 cut(s) 7, 226, 1120
BspACI CCGC 3 cut(s) 564, 779, 965
BspANI GGCC 1 cut(s) 735
BspCNI CTCAG 1 cut(s) 478
BspPI GGATC 2 cut(s) 15, 221
BspQI GCTCTTC 1 cut(s) 280
BspT104I TTCGAA 1 cut(s) 283
BspTI CTTAAG 1 cut(s) 322
BsrDI GCAATG 1 cut(s) 766
BssECI CCNNGG 2 cut(s) 715, 839
BssMI GATC 3 cut(s) 7, 226, 1120
BssNI GRCGYC 1 cut(s) 241
BssT1I CCWWGG 1 cut(s) 715
Bst2UI CCWGG 2 cut(s) 231, 840
Bst4CI ACNGT 2 cut(s) 42, 628
Bst6I CTCTTC 2 cut(s) 162, 280
BstACI GRCGYC 1 cut(s) 241
BstAFI CTTAAG 1 cut(s) 322
BstBI TTCGAA 1 cut(s) 283
BstDEI CTNAG 6 cut(s) 301, 486, 599, 612, 849, 1055
BstF5I GGATG 3 cut(s) 464, 472, 725
BstKTI GATC 3 cut(s) 10, 229, 1123
BstMBI GATC 3 cut(s) 7, 226, 1120
BstMWI GCNNNNNNNGC 1 cut(s) 765
BstNI CCWGG 2 cut(s) 231, 840
BstSCI CCNGG 2 cut(s) 229, 838
BstSFI CTRYAG 1 cut(s) 687
BsuI GTATCC 2 cut(s) 267, 959
BsuRI GGCC 1 cut(s) 735
BtsCI GGATG 3 cut(s) 464, 472, 725
BtsIMutI CAGTG 1 cut(s) 633
CseI GACGC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 28
CviAII CATG 4 cut(s) 45, 580, 737, 756
CviJI RGCY 7 cut(s) 290, 353, 400, 676, 735, 848, 995
CviKI_1 RGCY 7 cut(s) 290, 353, 400, 676, 735, 848, 995
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 6 cut(s) 301, 486, 599, 612, 849, 1055
DpnI GATC 3 cut(s) 9, 228, 1122
DpnII GATC 3 cut(s) 7, 226, 1120
DraI TTTAAA 1 cut(s) 141
Eam1104I CTCTTC 2 cut(s) 162, 280
EarI CTCTTC 2 cut(s) 162, 280
Ecl136II GAGCTC 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 715
Eco24I GRGCYC 1 cut(s) 355
Eco32I GATATC 1 cut(s) 1098
Eco53kI GAGCTC 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 432
EcoICRI GAGCTC 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 787
EcoRII CCWGG 2 cut(s) 229, 838
EcoRV GATATC 1 cut(s) 1098
EcoT14I CCWWGG 1 cut(s) 715
EcoT38I GRGCYC 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 715
FaeI CATG 4 cut(s) 48, 583, 740, 759
FaqI GGGAC 2 cut(s) 119, 357
FatI CATG 4 cut(s) 44, 579, 736, 755
FokI GGATG 3 cut(s) 451, 459, 732
FriOI GRGCYC 1 cut(s) 355
FspBI CTAG 1 cut(s) 164
HaeIII GGCC 1 cut(s) 735
HapII CCGG 2 cut(s) 13, 673
HgaI GACGC 1 cut(s) 230
Hin1I GRCGYC 1 cut(s) 241
Hin1II CATG 4 cut(s) 48, 583, 740, 759
HinfI GANTC 3 cut(s) 310, 593, 743
HpaII CCGG 2 cut(s) 13, 673
Hpy188I TCNGA 2 cut(s) 7, 412
Hpy188III TCNNGA 1 cut(s) 920
HpyAV CCTTC 1 cut(s) 156
HpyCH4III ACNGT 2 cut(s) 42, 628
HpyCH4IV ACGT 2 cut(s) 223, 1039
HpyCH4V TGCA 5 cut(s) 53, 252, 583, 759, 884
HpyF10VI GCNNNNNNNGC 1 cut(s) 765
HpyF3I CTNAG 6 cut(s) 301, 486, 599, 612, 849, 1055
HpySE526I ACGT 2 cut(s) 223, 1039
Hsp92I GRCGYC 1 cut(s) 241
Hsp92II CATG 4 cut(s) 48, 583, 740, 759
Kzo9I GATC 3 cut(s) 7, 226, 1120
LguI GCTCTTC 1 cut(s) 280
LmnI GCTCC 2 cut(s) 350, 841
LpnPI CCDG 8 cut(s) 26, 216, 243, 489, 516, 686, 825, 852
LweI GCATC 1 cut(s) 925
MaeI CTAG 1 cut(s) 164
MaeII ACGT 2 cut(s) 223, 1039
MaeIII GTNAC 5 cut(s) 109, 272, 329, 594, 896
MalI GATC 3 cut(s) 9, 228, 1122
MboI GATC 3 cut(s) 7, 226, 1120
MboII GAAGA 8 cut(s) 179, 297, 330, 425, 520, 810, 995, 1115
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 9 cut(s) 118, 186, 389, 416, 559, 769, 787, 879, 941
MlyI GAGTC 1 cut(s) 602
MmeI TCCRAC 1 cut(s) 485
MnlI CCTC 4 cut(s) 18, 545, 725, 916
MseI TTAA 4 cut(s) 126, 140, 323, 1132
MspCI CTTAAG 1 cut(s) 322
MspI CCGG 2 cut(s) 13, 673
MspR9I CCNGG 2 cut(s) 231, 840
Mva1269I GAATGC 1 cut(s) 534
MvaI CCWGG 2 cut(s) 231, 840
MwoI GCNNNNNNNGC 1 cut(s) 765
NdeII GATC 3 cut(s) 7, 226, 1120
NlaIII CATG 4 cut(s) 48, 583, 740, 759
NmuCI GTSAC 3 cut(s) 109, 272, 594
NspV TTCGAA 1 cut(s) 283
PciSI GCTCTTC 1 cut(s) 280
PctI GAATGC 1 cut(s) 534
PfeI GAWTC 2 cut(s) 310, 743
PfoI TCCNGGA 1 cut(s) 229
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
Psp124BI GAGCTC 1 cut(s) 355
Psp1406I AACGTT 1 cut(s) 1039
Psp6I CCWGG 2 cut(s) 229, 838
PspGI CCWGG 2 cut(s) 229, 838
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SacI GAGCTC 1 cut(s) 355
SapI GCTCTTC 1 cut(s) 280
SaqAI TTAA 4 cut(s) 126, 140, 323, 1132
Sau3AI GATC 3 cut(s) 7, 226, 1120
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 2 cut(s) 231, 840
SduI GDGCHC 1 cut(s) 355
SfaNI GCATC 1 cut(s) 925
SfcI CTRYAG 1 cut(s) 687
SfuI TTCGAA 1 cut(s) 283
SmlI CTYRAG 3 cut(s) 322, 354, 401
SmoI CTYRAG 3 cut(s) 322, 354, 401
Sse9I AATT 9 cut(s) 118, 186, 389, 416, 559, 769, 787, 879, 941
SsiI CCGC 3 cut(s) 564, 779, 965
SspI AATATT 2 cut(s) 280, 574
SspMI CTAG 1 cut(s) 164
SstI GAGCTC 1 cut(s) 355
StyD4I CCNGG 2 cut(s) 229, 838
StyI CCWWGG 1 cut(s) 715
TaaI ACNGT 2 cut(s) 42, 628
TaiI ACGT 2 cut(s) 226, 1042
TaqI TCGA 3 cut(s) 81, 283, 1006
TasI AATT 9 cut(s) 118, 186, 389, 416, 559, 769, 787, 879, 941
TfiI GAWTC 2 cut(s) 310, 743
Tru1I TTAA 4 cut(s) 126, 140, 323, 1132
Tru9I TTAA 4 cut(s) 126, 140, 323, 1132
TscAI CASTG 1 cut(s) 633
TseFI GTSAC 3 cut(s) 109, 272, 594
Tsp45I GTSAC 3 cut(s) 109, 272, 594
TspDTI ATGAA 6 cut(s) 195, 330, 744, 756, 818, 975
TspGWI ACGGA 1 cut(s) 363
TspRI CASTG 1 cut(s) 633
Vha464I CTTAAG 1 cut(s) 322
XapI RAATTY 3 cut(s) 559, 787, 941
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.