AT3G31402

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000122
Physical Location & Seq
Reverse (-)
12770931 .. 12773539
2609 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G31402.1

Sequence Viewer

Length: 1182 bp
ATGAGAGATAATGCTGGTAAATGTATAAGAAGTGATGCATTTATCACAGATGGATTCTGTAGGTGGAATAATTTTAAGAGTTTTCCAGAACATGTAGGAGGTGTTGATAGTTTTCACAACAATGTAGTTATGAAGTGTGAAAACTTGACGAAACAAGGATTAGCTTTCCGTGGGCATTATAAGTCTGAAAATTCTGCTAATAAAGGAAATTTTGTGGAACTCTTAAAGTATACTGCTGATCAAAATGAAGTTGTGAAAGTCAAATCTGTAATTGAAGAAATTGATCATAACGTTTTTGGTTTGTTAGTAGATGAATCTGCTGATGTGTCTGATAAAGAACAAATGACACTCGTGTTTAGATTTTTTGATAAAAGTGGGATAGTCAAAGAGAGATTTCTGAGTATTATACATGTGAAAGAGACATCTGCAATATCTTTAAAATCTGCTATTGATGATTTGTTTGCTAAATACAGATTGAACATTAAAAAGGGGAGAGGACAAGGGTATGACGGAGAAATTGGAGCTTCATGCAAGAGGAAAGATTTGATCCGAGAGAAGCATAGAAAAAAGATTCTAGAAGGAATAATTAATGGTGAAATCAGTACTAGAACATGGTTGAATCAAGAGATCTCTCTTCAAAGACCAGGATATACTCGTTGGAATTCTCACTACATAACTCTATTGCGGTTGACTAAGATGTACTTTTCTATCATCAAGAAATTTGACGACCATTTTAATGAGGTGAACACTGAATTGCTTATTTGTGCTGCTTCTTTATCTCCCATTGATGCATTTTATGAGTTTGATCACTCAAAGTTAGTGAGGTTATCTAAGTTCTACCAAGTTGACTTTAGTTTAGGAGAGTTCATATCTATTGAGAAAGAATTATCTATCTACATTGATACTGTTCGAAATGATGAGAGATTTTCTAATTTAAAGAATCTTGGAGACATTGCTCAGAAGGTGGTGGAAACACGAAAACATTTGTCATATCCCTTTGGTTATAGGCTTTTGAAATTGGTTTTGATTTTGCATGTTGCTACTGCTACTGTTGAGAGATGTTTTTCAGCCATGAAGATCAGATCTCCAGTTCTTAACTATCAAGGAGATGATTTCTCCGGTGAAGCCATGGAATCTAAGGAAAAGAAGAGGAGCAGCGTGTATAGAAACGGAATTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

393

Amino Acids

45.27

Weight (kDa)

8.87

Isoelectric Point (pI)

33.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 12 - 53 9e-07 Domain of unknown function (DUF4371)
DUF4371 PF14291 49 - 86 8e-13 Domain of unknown function (DUF4371)
DUF4371 PF14291 88 - 172 4.9e-38 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AccI GTMKAC 1 cut(s) 230
AciI CCGC 1 cut(s) 685
AclI AACGTT 1 cut(s) 291
AclWI GGATC 1 cut(s) 541
AcsI RAATTY 4 cut(s) 190, 208, 661, 719
AfaI GTAC 2 cut(s) 604, 701
AflIII ACRYGT 2 cut(s) 91, 409
AgsI TTSAA 6 cut(s) 275, 478, 619, 638, 1015, 1178
AjnI CCWGG 1 cut(s) 643
AluBI AGCT 2 cut(s) 164, 524
AluI AGCT 2 cut(s) 164, 524
Alw26I GTCTC 2 cut(s) 413, 942
AlwI GGATC 1 cut(s) 541
ApeKI GCWGC 2 cut(s) 767, 1155
ApoI RAATTY 4 cut(s) 190, 208, 661, 719
AseI ATTAAT 1 cut(s) 588
AsuHPI GGTGA 3 cut(s) 605, 754, 1133
AsuII TTCGAA 1 cut(s) 910
BauI CACGAG 1 cut(s) 350
BbvI GCAGC 2 cut(s) 754, 1167
BccI CCATC 1 cut(s) 44
BciT130I CCWGG 1 cut(s) 645
BclI TGATCA 3 cut(s) 238, 283, 805
BcoDI GTCTC 2 cut(s) 413, 942
BfaI CTAG 2 cut(s) 575, 606
BfmI CTRYAG 1 cut(s) 58
BglII AGATCT 2 cut(s) 627, 1082
BisI GCNGC 2 cut(s) 768, 1156
BlsI GCNGC 2 cut(s) 769, 1157
BmcAI AGTACT 1 cut(s) 604
Bme1390I CCNGG 1 cut(s) 645
BmrFI CCNGG 1 cut(s) 645
BmsI GCATC 2 cut(s) 25, 778
BpmI CTGGAG 1 cut(s) 1071
Bpu14I TTCGAA 1 cut(s) 910
BsaJI CCNNGG 2 cut(s) 169, 1128
BsaWI WCCGGW 1 cut(s) 1118
Bse1I ACTGG 1 cut(s) 1088
Bse3DI GCAATG 1 cut(s) 951
BseBI CCWGG 1 cut(s) 645
BseDI CCNNGG 2 cut(s) 169, 1128
BseMI GCAATG 1 cut(s) 951
BseMII CTCAG 2 cut(s) 389, 971
BseNI ACTGG 1 cut(s) 1088
BseRI GAGGAG 1 cut(s) 1165
BseXI GCAGC 2 cut(s) 754, 1167
BsiSI CCGG 1 cut(s) 1119
BsmAI GTCTC 2 cut(s) 413, 942
Bsp119I TTCGAA 1 cut(s) 910
Bsp143I GATC 7 cut(s) 238, 283, 546, 627, 805, 1077, 1082
Bsp19I CCATGG 1 cut(s) 1128
BspACI CCGC 1 cut(s) 685
BspCNI CTCAG 2 cut(s) 390, 970
BspPI GGATC 1 cut(s) 541
BspT104I TTCGAA 1 cut(s) 910
BsrDI GCAATG 1 cut(s) 951
BsrI ACTGG 1 cut(s) 1088
BssECI CCNNGG 2 cut(s) 169, 1128
BssMI GATC 7 cut(s) 238, 283, 546, 627, 805, 1077, 1082
BssNAI GTATAC 1 cut(s) 231
BssSI CACGAG 1 cut(s) 350
BssT1I CCWWGG 1 cut(s) 1128
Bst1107I GTATAC 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 350
Bst2UI CCWGG 1 cut(s) 645
Bst4CI ACNGT 2 cut(s) 907, 1051
Bst6I CTCTTC 2 cut(s) 639, 1142
BstBI TTCGAA 1 cut(s) 910
BstDEI CTNAG 5 cut(s) 398, 693, 831, 957, 1137
BstDSI CCRYGG 2 cut(s) 169, 1128
BstKTI GATC 7 cut(s) 241, 286, 549, 630, 808, 1080, 1085
BstMAI GTCTC 2 cut(s) 413, 942
BstMBI GATC 7 cut(s) 238, 283, 546, 627, 805, 1077, 1082
BstNI CCWGG 1 cut(s) 645
BstNSI RCATGY 3 cut(s) 95, 413, 1037
BstSCI CCNGG 1 cut(s) 643
BstSFI CTRYAG 1 cut(s) 58
BstV1I GCAGC 2 cut(s) 754, 1167
BstX2I RGATCY 2 cut(s) 627, 1082
BstYI RGATCY 2 cut(s) 627, 1082
BstZ17I GTATAC 1 cut(s) 231
BtgI CCRYGG 2 cut(s) 169, 1128
BtsIMutI CAGTG 1 cut(s) 747
Csp6I GTAC 2 cut(s) 603, 700
CviAII CATG 7 cut(s) 92, 410, 528, 612, 1034, 1072, 1129
CviJI RGCY 5 cut(s) 164, 524, 1009, 1070, 1127
CviKI_1 RGCY 5 cut(s) 164, 524, 1009, 1070, 1127
CviQI GTAC 2 cut(s) 603, 700
DdeI CTNAG 5 cut(s) 398, 693, 831, 957, 1137
DpnI GATC 7 cut(s) 240, 285, 548, 629, 807, 1079, 1084
DpnII GATC 7 cut(s) 238, 283, 546, 627, 805, 1077, 1082
DraI TTTAAA 2 cut(s) 438, 936
Eam1104I CTCTTC 2 cut(s) 639, 1142
EarI CTCTTC 2 cut(s) 639, 1142
Eco130I CCWWGG 1 cut(s) 1128
EcoRI GAATTC 1 cut(s) 661
EcoRII CCWGG 1 cut(s) 643
EcoT14I CCWWGG 1 cut(s) 1128
EcoT22I ATGCAT 2 cut(s) 40, 793
ErhI CCWWGG 1 cut(s) 1128
FaeI CATG 7 cut(s) 95, 413, 531, 615, 1037, 1075, 1132
FalI AAGNNNNNCTT 2 cut(s) 686, 718
FatI CATG 7 cut(s) 91, 409, 527, 611, 1033, 1071, 1128
FbaI TGATCA 3 cut(s) 238, 283, 805
FblI GTMKAC 1 cut(s) 230
Fnu4HI GCNGC 2 cut(s) 768, 1156
Fsp4HI GCNGC 2 cut(s) 768, 1156
FspBI CTAG 2 cut(s) 575, 606
GluI GCNGC 2 cut(s) 768, 1156
GsuI CTGGAG 1 cut(s) 1071
HapII CCGG 1 cut(s) 1119
Hin1II CATG 7 cut(s) 95, 413, 531, 615, 1037, 1075, 1132
HincII GTYRAC 2 cut(s) 690, 847
HindII GTYRAC 2 cut(s) 690, 847
HinfI GANTC 6 cut(s) 54, 314, 571, 619, 940, 1133
HpaII CCGG 1 cut(s) 1119
HphI GGTGA 3 cut(s) 605, 754, 1133
Hpy166II GTNNAC 4 cut(s) 231, 690, 745, 847
Hpy188I TCNGA 6 cut(s) 187, 331, 399, 551, 960, 1082
Hpy188III TCNNGA 4 cut(s) 86, 575, 623, 715
Hpy8I GTNNAC 4 cut(s) 231, 690, 745, 847
HpyAV CCTTC 2 cut(s) 572, 955
HpyCH4III ACNGT 2 cut(s) 907, 1051
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 5 cut(s) 38, 428, 531, 791, 1033
HpyF3I CTNAG 5 cut(s) 398, 693, 831, 957, 1137
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 7 cut(s) 95, 413, 531, 615, 1037, 1075, 1132
Ksp22I TGATCA 3 cut(s) 238, 283, 805
Kzo9I GATC 7 cut(s) 238, 283, 546, 627, 805, 1077, 1082
LmnI GCTCC 2 cut(s) 521, 1152
LpnPI CCDG 5 cut(s) 99, 630, 657, 1101, 1132
Lsp1109I GCAGC 2 cut(s) 754, 1167
LweI GCATC 2 cut(s) 25, 778
MaeI CTAG 2 cut(s) 575, 606
MaeII ACGT 1 cut(s) 291
MalI GATC 7 cut(s) 240, 285, 548, 629, 807, 1079, 1084
MboI GATC 7 cut(s) 238, 283, 546, 627, 805, 1077, 1082
MboII GAAGA 4 cut(s) 287, 626, 1087, 1159
MflI RGATCY 2 cut(s) 627, 1082
MmeI TCCRAC 1 cut(s) 638
MnlI CCTC 6 cut(s) 92, 488, 528, 733, 816, 1143
Mph1103I ATGCAT 2 cut(s) 40, 793
MseI TTAA 8 cut(s) 75, 224, 437, 483, 588, 735, 935, 1095
MslI CAYNNNNRTG 2 cut(s) 120, 735
MspI CCGG 1 cut(s) 1119
MspR9I CCNGG 1 cut(s) 645
MvaI CCWGG 1 cut(s) 645
NcoI CCATGG 1 cut(s) 1128
NdeII GATC 7 cut(s) 238, 283, 546, 627, 805, 1077, 1082
NlaIII CATG 7 cut(s) 95, 413, 531, 615, 1037, 1075, 1132
NsiI ATGCAT 2 cut(s) 40, 793
NspI RCATGY 3 cut(s) 95, 413, 1037
NspV TTCGAA 1 cut(s) 910
PciI ACATGT 2 cut(s) 91, 409
PfeI GAWTC 6 cut(s) 54, 314, 571, 619, 940, 1133
PkrI GCNGC 2 cut(s) 769, 1157
PscI ACATGT 2 cut(s) 91, 409
PshBI ATTAAT 1 cut(s) 588
PsiI TTATAA 1 cut(s) 180
Psp1406I AACGTT 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 643
PspGI CCWGG 1 cut(s) 643
PsuI RGATCY 2 cut(s) 627, 1082
RsaI GTAC 2 cut(s) 604, 701
RsaNI GTAC 2 cut(s) 603, 700
RseI CAYNNNNRTG 2 cut(s) 120, 735
SaqAI TTAA 8 cut(s) 75, 224, 437, 483, 588, 735, 935, 1095
SatI GCNGC 2 cut(s) 768, 1156
Sau3AI GATC 7 cut(s) 238, 283, 546, 627, 805, 1077, 1082
ScaI AGTACT 1 cut(s) 604
ScrFI CCNGG 1 cut(s) 645
SetI ASST 8 cut(s) 65, 103, 166, 294, 526, 744, 827, 966
SfaNI GCATC 2 cut(s) 25, 778
SfcI CTRYAG 1 cut(s) 58
SfuI TTCGAA 1 cut(s) 910
SmiMI CAYNNNNRTG 2 cut(s) 120, 735
SsiI CCGC 1 cut(s) 685
SspMI CTAG 2 cut(s) 575, 606
StyD4I CCNGG 1 cut(s) 643
StyI CCWWGG 1 cut(s) 1128
TaaI ACNGT 2 cut(s) 907, 1051
TaiI ACGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 910
TatI WGTACW 2 cut(s) 602, 699
TfiI GAWTC 6 cut(s) 54, 314, 571, 619, 940, 1133
Tru1I TTAA 8 cut(s) 75, 224, 437, 483, 588, 735, 935, 1095
Tru9I TTAA 8 cut(s) 75, 224, 437, 483, 588, 735, 935, 1095
TscAI CASTG 1 cut(s) 754
TseI GCWGC 2 cut(s) 767, 1155
TspDTI ATGAA 6 cut(s) 146, 261, 327, 516, 856, 1088
TspGWI ACGGA 2 cut(s) 158, 525
TspRI CASTG 1 cut(s) 754
VspI ATTAAT 1 cut(s) 588
XapI RAATTY 4 cut(s) 190, 208, 661, 719
XbaI TCTAGA 1 cut(s) 574
XceI RCATGY 3 cut(s) 95, 413, 1037
XmiI GTMKAC 1 cut(s) 230
XspI CTAG 2 cut(s) 575, 606
ZrmI AGTACT 1 cut(s) 604
Zsp2I ATGCAT 2 cut(s) 40, 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.