Rmu_sc0029861.1_g000001

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0029861.1
OG0000122
Physical Location & Seq
Forward (+)
6733 .. 7474
742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0029861.1_g000001.1.cds

Sequence Viewer

Length: 585 bp
atgctaccaccccttgaagatagccgtattcaggtagaaataaacttggcaaatcttccttcagatcctggattacaaatcggaatttcagattatgatccgaatattcgagaccaagttcgaagagaatatctgcaaagggcaaatattggagatcaagcaggtggtgatgtctttactagtgatggttttcgaaattggaaaaagaaagaaagattatatgatcatgtcggagaccacagcagtgctcataatcaagctttgaagaagtgtgaagccttgatgaatgaaaatcaacacattcgaaatattatccacaagaatgctaagcaatccagaacaaattatcgaattcggctcactgcatcagttgattgcattcggtttcttctaagacaaggccttgcatttcgaggccatgatgagtcggacaattcaagcaatcagggtaactttcttcaactcttacaatttcttgctgatcatgatcaagaagttagagctgttgctttgaaaaatggtcctgaaaacctcaaaatgacatcacctatgattcagaaagacagtaaatgctgctgcagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

194

Amino Acids

22.1

Weight (kDa)

7.69

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 152
Acc36I ACCTGC 1 cut(s) 152
AclWI GGATC 2 cut(s) 59, 92
AcsI RAATTY 2 cut(s) 84, 351
AcuI CTGAAG 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 5 cut(s) 17, 265, 438, 461, 514
AhlI ACTAGT 1 cut(s) 179
AjnI CCWGG 1 cut(s) 67
AleI CACNNNNGTG 1 cut(s) 243
AluBI AGCT 2 cut(s) 260, 503
AluI AGCT 2 cut(s) 260, 503
Alw21I GWGCWC 1 cut(s) 250
Alw26I GTCTC 2 cut(s) 105, 228
AlwI GGATC 2 cut(s) 59, 92
AlwNI CAGNNNCTG 1 cut(s) 68
AoxI GGCC 2 cut(s) 400, 415
ApeKI GCWGC 2 cut(s) 573, 576
ApoI RAATTY 2 cut(s) 84, 351
AspS9I GGNCC 1 cut(s) 521
AsuHPI GGTGA 2 cut(s) 179, 537
AsuII TTCGAA 3 cut(s) 121, 193, 304
AvaII GGWCC 1 cut(s) 521
Bbv12I GWGCWC 1 cut(s) 250
BbvI GCAGC 2 cut(s) 560, 563
BccI CCATC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 9
BciT130I CCWGG 1 cut(s) 69
BclI TGATCA 3 cut(s) 223, 481, 487
BcoDI GTCTC 2 cut(s) 105, 228
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 577
BfuAI ACCTGC 1 cut(s) 152
BisI GCNGC 2 cut(s) 574, 577
BlpI GCTNAGC 1 cut(s) 327
BlsI GCNGC 2 cut(s) 575, 578
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 521
BmgT120I GGNCC 1 cut(s) 521
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 374
Bpu1102I GCTNAGC 1 cut(s) 327
Bpu14I TTCGAA 3 cut(s) 121, 193, 304
BsaBI GATNNNNATC 2 cut(s) 96, 486
BsaI GGTCTC 2 cut(s) 105, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse8I GATNNNNATC 2 cut(s) 96, 486
BseBI CCWGG 1 cut(s) 69
BseJI GATNNNNATC 2 cut(s) 96, 486
BseLI CCNNNNNNNGG 1 cut(s) 31
BseXI GCAGC 2 cut(s) 560, 563
BshFI GGCC 2 cut(s) 402, 417
BsiHKAI GWGCWC 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 2 cut(s) 105, 228
BsmI GAATGC 2 cut(s) 328, 378
BsnI GGCC 2 cut(s) 402, 417
Bso31I GGTCTC 2 cut(s) 105, 228
Bsp119I TTCGAA 3 cut(s) 121, 193, 304
Bsp1286I GDGCHC 1 cut(s) 250
Bsp143I GATC 6 cut(s) 64, 97, 154, 223, 481, 487
Bsp1720I GCTNAGC 1 cut(s) 327
BspANI GGCC 2 cut(s) 402, 417
BspHI TCATGA 1 cut(s) 484
BspMAI CTGCAG 1 cut(s) 581
BspMI ACCTGC 1 cut(s) 152
BspPI GGATC 2 cut(s) 59, 92
BspT104I TTCGAA 3 cut(s) 121, 193, 304
BspTNI GGTCTC 2 cut(s) 105, 228
BssMI GATC 6 cut(s) 64, 97, 154, 223, 481, 487
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 1 cut(s) 566
Bst6I CTCTTC 1 cut(s) 118
BstBI TTCGAA 3 cut(s) 121, 193, 304
BstDEI CTNAG 2 cut(s) 327, 392
BstKTI GATC 6 cut(s) 67, 100, 157, 226, 484, 490
BstMAI GTCTC 2 cut(s) 105, 228
BstMBI GATC 6 cut(s) 64, 97, 154, 223, 481, 487
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 1 cut(s) 67
BstSFI CTRYAG 1 cut(s) 577
BstV1I GCAGC 2 cut(s) 560, 563
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BsuRI GGCC 2 cut(s) 402, 417
BtsI GCAGTG 2 cut(s) 250, 360
BtsIMutI CAGTG 2 cut(s) 250, 360
BveI ACCTGC 1 cut(s) 152
CaiI CAGNNNCTG 1 cut(s) 68
CciI TCATGA 1 cut(s) 484
Cfr13I GGNCC 1 cut(s) 521
CviAII CATG 3 cut(s) 227, 419, 485
CviJI RGCY 7 cut(s) 24, 260, 278, 358, 402, 417, 503
CviKI_1 RGCY 7 cut(s) 24, 260, 278, 358, 402, 417, 503
DdeI CTNAG 2 cut(s) 327, 392
DpnI GATC 6 cut(s) 66, 99, 156, 225, 483, 489
DpnII GATC 6 cut(s) 64, 97, 154, 223, 481, 487
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Eco147I AGGCCT 1 cut(s) 402
Eco31I GGTCTC 2 cut(s) 105, 228
Eco47I GGWCC 1 cut(s) 521
Eco57I CTGAAG 1 cut(s) 45
EcoRI GAATTC 1 cut(s) 351
EcoRII CCWGG 1 cut(s) 67
FaeI CATG 3 cut(s) 230, 422, 488
FaiI YATR 8 cut(s) 96, 220, 222, 228, 252, 420, 486, 551
FatI CATG 3 cut(s) 226, 418, 484
FbaI TGATCA 3 cut(s) 223, 481, 487
Fnu4HI GCNGC 2 cut(s) 574, 577
Fsp4HI GCNGC 2 cut(s) 574, 577
FspBI CTAG 1 cut(s) 180
GluI GCNGC 2 cut(s) 574, 577
HaeIII GGCC 2 cut(s) 402, 417
Hin1II CATG 3 cut(s) 230, 422, 488
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 2 cut(s) 425, 553
HphI GGTGA 2 cut(s) 179, 537
Hpy188I TCNGA 7 cut(s) 64, 83, 91, 102, 233, 430, 558
Hpy188III TCNNGA 5 cut(s) 110, 336, 485, 491, 524
HpyAV CCTTC 1 cut(s) 69
HpyCH4III ACNGT 1 cut(s) 566
HpyCH4V TGCA 5 cut(s) 136, 365, 378, 407, 579
HpyF3I CTNAG 2 cut(s) 327, 392
Hsp92II CATG 3 cut(s) 230, 422, 488
Ksp22I TGATCA 3 cut(s) 223, 481, 487
Kzo9I GATC 6 cut(s) 64, 97, 154, 223, 481, 487
LpnPI CCDG 7 cut(s) 17, 54, 81, 147, 349, 431, 537
Lsp1109I GCAGC 2 cut(s) 560, 563
LweI GCATC 1 cut(s) 374
MaeI CTAG 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 449
MalI GATC 6 cut(s) 66, 99, 156, 225, 483, 489
MboI GATC 6 cut(s) 64, 97, 154, 223, 481, 487
MboII GAAGA 6 cut(s) 29, 47, 135, 277, 380, 449
MflI RGATCY 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 6 cut(s) 84, 196, 343, 351, 433, 470
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 2 cut(s) 211, 408
MnlI CCTC 2 cut(s) 407, 542
MslI CAYNNNNRTG 2 cut(s) 243, 321
MspR9I CCNGG 1 cut(s) 69
Mva1269I GAATGC 2 cut(s) 328, 378
MvaI CCWGG 1 cut(s) 69
NdeII GATC 6 cut(s) 64, 97, 154, 223, 481, 487
NlaIII CATG 3 cut(s) 230, 422, 488
NspV TTCGAA 3 cut(s) 121, 193, 304
OliI CACNNNNGTG 1 cut(s) 243
PagI TCATGA 1 cut(s) 484
PaqCI CACCTGC 1 cut(s) 152
PceI AGGCCT 1 cut(s) 402
PctI GAATGC 2 cut(s) 328, 378
PfeI GAWTC 1 cut(s) 553
PfoI TCCNGGA 1 cut(s) 67
PkrI GCNGC 2 cut(s) 575, 578
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspPI GGNCC 1 cut(s) 521
PstI CTGCAG 1 cut(s) 581
PstNI CAGNNNCTG 1 cut(s) 68
PsuI RGATCY 1 cut(s) 64
RseI CAYNNNNRTG 2 cut(s) 243, 321
SatI GCNGC 2 cut(s) 574, 577
Sau3AI GATC 6 cut(s) 64, 97, 154, 223, 481, 487
Sau96I GGNCC 1 cut(s) 521
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 1 cut(s) 69
SduI GDGCHC 1 cut(s) 250
SetI ASST 6 cut(s) 36, 166, 262, 505, 534, 550
SfaNI GCATC 1 cut(s) 374
SfcI CTRYAG 1 cut(s) 577
SfuI TTCGAA 3 cut(s) 121, 193, 304
SinI GGWCC 1 cut(s) 521
SmiMI CAYNNNNRTG 2 cut(s) 243, 321
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 6 cut(s) 84, 196, 343, 351, 433, 470
SseBI AGGCCT 1 cut(s) 402
SspI AATATT 3 cut(s) 106, 148, 310
SspMI CTAG 1 cut(s) 180
StuI AGGCCT 1 cut(s) 402
StyD4I CCNGG 1 cut(s) 67
TaaI ACNGT 1 cut(s) 566
TaqI TCGA 6 cut(s) 109, 121, 193, 304, 349, 412
TasI AATT 6 cut(s) 84, 196, 343, 351, 433, 470
TfiI GAWTC 1 cut(s) 553
TscAI CASTG 2 cut(s) 250, 367
TseI GCWGC 2 cut(s) 573, 576
TspDTI ATGAA 2 cut(s) 299, 303
TspRI CASTG 2 cut(s) 250, 367
VpaK11BI GGWCC 1 cut(s) 521
XapI RAATTY 2 cut(s) 84, 351
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.