Rroxscaffold_1G00013960

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000122
Physical Location & Seq
Reverse (-)
17245501 .. 17248530
3030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013960.1

Sequence Viewer

Length: 2112 bp
ATGGCATACATACAAAAAGGTCCTTGTCAGCCTCGAGACTATAAGTTTCCCAAGAAGACTCTGGCAGGAAACTCAGAAAGACGGTTCAATCCGGCTTGGTTTGATGAATTTCCTACTTGGTTGGAATATAGCATTGAAAAAGATGCTGCCTTTTGTCTCTGTTGTTATCTCTTCAAACCTGATATTGGAGAACAAACAGGCAGTGATGCATTCGTTCGCAAAGGGTTTTCGAATTGGAAGAAGAAAGAAGGTTTACAAGGTCATGTTGGAGGACCTAATAGTTTCCACAACAAAGCTAGGATAAATTATGAAGCCTTATTGAACCAAAACCAAGCTCGAAGTGATTGTCAAACACTTTTGGGTGCATCAATTGATTGTGTCAAGTTTCTTATGCGACAAGGTCTTCTATTCTGTGGACATGATGAATATGAAACTTCAAATGACCAAGGAAGTGTTGTTGGACTTTTGAGATTTCTATATGATCATAGTACAGATATAAAAGCTGCTGCATCAAGAAATTCTCCTGAGACTCTGAAGGTGACATCATGTGATATTCAGAAGGACATTGTAAGTGCTATTTCAACTGAAATCATCAATACAATTACTAGAGATATCAGCGATTCACTATTTTCCATTCTTATTAATGAATTCCTTGACATTTCTTCAATGAATCAAATGGCTATTATTTTACGTTTTGTGGACAAGGGTACTGTAATTGAGCGATATTTAGGTATGGTGCATGTTACCAATGCTACAGCTCTCTCCCTCAAGGTGGCTGTTGATGACTTTTTTTCTAGTCATGGATTAATCATGTCTAGGTTGCGGGGACAAACTTACGTTGGGACAAGTAATATGCATTGTGAGTTCAATAGTCTTAAGACACTTATTATGAAGGAGAATAAGTGTGCATTTTATGTTCATAGCTTTACTCATGATCTTCATTCAGTTCTCATAGATGTGGCGAAGAATCACAAAGAAATCATGGGTCTCTTTACTGCGGTTGCTAATGTAGTGAAGGTTGTTGGAACCTTTGTTCAATGTCGTGATACACTTCGGAAGAAACATGGTGTGTTAGTTCTTGAAGCACTCAATACTGGTGAGTTTTTAAGAGGACAAGGTCTAAATGAGGAAAGCGCAAATTTTAAGACTTTATCAAGCTTGCGTACTGTGTTCTCATCAGTGATAGATGTGCTTGAGATGATGGCAGAGGTTGGATCAGATTCTGAGCAGAAGTATAAAGCAGAAATTCTACTGGATTCCCTCCAATCTTTCAATTTTATTTTTTGCTTACATATGATGGTAATGATTTTGGGAATCACAGATGATTTGTCACAAGCATTTCAAAGAAAAGATCAAGATATTCTAAACATCCTGAACTTGGTACAAATATGCAAAAAGCAACTGAAGATGATGAGGGAGAGTTGTTGGGATTCTTTACTTGATCAAGTTTCTAGTTTCTGTGACAAACATCATATTGAAGTTCATAAGATGGATGGTATGTTTCTAACTCGAGGGCGGCCAAGGCATAAAGTTCAAGTGATCACAAACAAGCATCATTATTGTGTTGAGTTGTTCTACAATGTTATAGATCTGCAACTTCAAGAGTTAAACAATCAATTCACTGAGATGAATACTGAGTTGCTTCTTTGTGTGGCATGTTTAGATCCAAGTAATTCATTCTCTGCTTTTGACAAACTAAAGTTGATTCAACTTGCTCGATATTATCCAAATGACTTTTCCACAACTGACTTTATGATACTTGAAGACCAGCTTGAGAAATACATTTTGGACATGCGTTCCAGCATTGGATTTTCAACCTTGAAAGGAATTTCTGATCTTGCTGAAAAATTGGTTGAGACAGGAAAAGATCAGGTTTACCCATTAGTTTACTTGCTGTTGACATTGTCTCTAATTTTACCAGTTGCAACTCCCAGGGTAGAAAGACTGTTTTCTGCTGTGAATTTGTTGAAGAATCGGTTACACAATCAAATGGAAGATCAATGGATGAGGGATAGCTTGATTGGATACGTTGAGAAGGACATTCTTGATAGTATTGATAAGAAGGTCGTACTGCAGCGACTTCAACATATCAAAAAATTTCCATGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

703

Amino Acids

80.32

Weight (kDa)

6.5

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 69 - 290 4.9e-49 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 823, 998, 1516
AclWI GGATC 2 cut(s) 1222, 1658
AcoI YGGCCR 1 cut(s) 1517
AcsI RAATTY 8 cut(s) 107, 517, 647, 1138, 1245, 1827, 1960, 2096
AcuI CTGAAG 2 cut(s) 554, 1424
AfaI GTAC 5 cut(s) 490, 709, 1165, 1383, 2070
AfiI CCNNNNNNNGG 3 cut(s) 185, 772, 1378
AflII CTTAAG 1 cut(s) 875
AjnI CCWGG 1 cut(s) 1931
AjuI GAANNNNNNNTTGG 4 cut(s) 1720, 1752, 1769, 1801
AloI GAACNNNNNNTCC 2 cut(s) 1017, 1049
AluBI AGCT 8 cut(s) 296, 335, 503, 758, 924, 1158, 1771, 2016
AluI AGCT 8 cut(s) 296, 335, 503, 758, 924, 1158, 1771, 2016
Alw26I GTCTC 6 cut(s) 30, 161, 521, 992, 1850, 1911
AlwI GGATC 2 cut(s) 1222, 1658
AlwNI CAGNNNCTG 1 cut(s) 1223
Ama87I CYCGRG 2 cut(s) 33, 1509
AoxI GGCC 1 cut(s) 1517
ApeKI GCWGC 4 cut(s) 146, 503, 506, 2074
ApoI RAATTY 8 cut(s) 107, 517, 647, 1138, 1245, 1827, 1960, 2096
ArsI GACNNNNNNTTYG 2 cut(s) 331, 363
AseI ATTAAT 2 cut(s) 642, 806
AspLEI GCGC 1 cut(s) 1136
AspS9I GGNCC 2 cut(s) 20, 272
AsuHPI GGTGA 2 cut(s) 550, 1109
AsuII TTCGAA 1 cut(s) 230
AvaI CYCGRG 2 cut(s) 33, 1509
AvaII GGWCC 2 cut(s) 20, 272
BbsI GAAGAC 3 cut(s) 62, 395, 1770
BbvI GCAGC 4 cut(s) 133, 490, 493, 2086
BccI CCATC 4 cut(s) 1195, 1291, 1483, 1487
BciT130I CCWGG 1 cut(s) 1933
BciVI GTATCC 1 cut(s) 2018
BclI TGATCA 3 cut(s) 481, 1441, 1539
BcoDI GTCTC 6 cut(s) 30, 161, 521, 992, 1850, 1911
BfaI CTAG 5 cut(s) 297, 606, 795, 816, 1452
BfmI CTRYAG 2 cut(s) 753, 2072
BfrI CTTAAG 1 cut(s) 875
BfuI GTATCC 1 cut(s) 2018
BglII AGATCT 1 cut(s) 1588
BisI GCNGC 5 cut(s) 147, 504, 507, 1517, 2075
BlsI GCNGC 5 cut(s) 148, 505, 508, 1518, 2076
Bme1390I CCNGG 1 cut(s) 1933
Bme18I GGWCC 2 cut(s) 20, 272
BmeT110I CYCGRG 2 cut(s) 33, 1509
BmgT120I GGNCC 2 cut(s) 20, 272
BmiI GGNNCC 1 cut(s) 1027
BmrFI CCNGG 1 cut(s) 1933
BmsI GCATC 5 cut(s) 133, 196, 374, 518, 1561
BpiI GAAGAC 3 cut(s) 62, 395, 1770
Bpu14I TTCGAA 1 cut(s) 230
BpuEI CTTGAG 3 cut(s) 752, 1214, 1793
BsaI GGTCTC 1 cut(s) 992
BsaJI CCNNGG 5 cut(s) 445, 1520, 1931, 1932, 2102
BsaXI ACNNNNNCTCC 2 cut(s) 887, 917
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 772, 1378
Bse1I ACTGG 3 cut(s) 1099, 1257, 1919
BseBI CCWGG 1 cut(s) 1933
BseDI CCNNGG 5 cut(s) 445, 1520, 1931, 1932, 2102
BseGI GGATG 3 cut(s) 1368, 1498, 2010
BseLI CCNNNNNNNGG 3 cut(s) 185, 772, 1378
BseMII CTCAG 5 cut(s) 87, 516, 1215, 1614, 1626
BseNI ACTGG 3 cut(s) 1099, 1257, 1919
BseXI GCAGC 4 cut(s) 133, 490, 493, 2086
BshFI GGCC 1 cut(s) 1519
BsiHKCI CYCGRG 2 cut(s) 33, 1509
BsiSI CCGG 1 cut(s) 92
BslFI GGGAC 2 cut(s) 840, 856
BslI CCNNNNNNNGG 3 cut(s) 185, 772, 1378
BsmAI GTCTC 6 cut(s) 30, 161, 521, 992, 1850, 1911
BsmFI GGGAC 2 cut(s) 840, 856
BsmI GAATGC 1 cut(s) 209
BsnI GGCC 1 cut(s) 1519
Bso31I GGTCTC 1 cut(s) 992
BsoBI CYCGRG 2 cut(s) 33, 1509
Bsp119I TTCGAA 1 cut(s) 230
Bsp19I CCATGG 1 cut(s) 2102
BspACI CCGC 3 cut(s) 823, 998, 1516
BspANI GGCC 1 cut(s) 1519
BspCNI CTCAG 5 cut(s) 86, 517, 1216, 1615, 1627
BspHI TCATGA 1 cut(s) 931
BspLI GGNNCC 1 cut(s) 1027
BspMAI CTGCAG 1 cut(s) 2076
BspPI GGATC 2 cut(s) 1222, 1658
BspT104I TTCGAA 1 cut(s) 230
BspTI CTTAAG 1 cut(s) 875
BspTNI GGTCTC 1 cut(s) 992
BsrI ACTGG 3 cut(s) 1099, 1257, 1919
BssECI CCNNGG 5 cut(s) 445, 1520, 1931, 1932, 2102
BssT1I CCWWGG 3 cut(s) 445, 1520, 2102
Bst2UI CCWGG 1 cut(s) 1933
Bst4CI ACNGT 4 cut(s) 84, 712, 1168, 1947
Bst6I CTCTTC 1 cut(s) 176
BstAFI CTTAAG 1 cut(s) 875
BstBI TTCGAA 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 1160
BstDEI CTNAG 5 cut(s) 73, 525, 1224, 1623, 1635
BstDSI CCRYGG 1 cut(s) 2102
BstF5I GGATG 3 cut(s) 1368, 1498, 2010
BstHHI GCGC 1 cut(s) 1136
BstMAI GTCTC 6 cut(s) 30, 161, 521, 992, 1850, 1911
BstMWI GCNNNNNNNGC 1 cut(s) 1522
BstNI CCWGG 1 cut(s) 1933
BstNSI RCATGY 3 cut(s) 743, 1659, 1795
BstSCI CCNGG 1 cut(s) 1931
BstSFI CTRYAG 2 cut(s) 753, 2072
BstV1I GCAGC 4 cut(s) 133, 490, 493, 2086
BstV2I GAAGAC 3 cut(s) 62, 395, 1770
BstX2I RGATCY 2 cut(s) 1588, 1663
BstYI RGATCY 2 cut(s) 1588, 1663
BsuI GTATCC 1 cut(s) 2018
BsuRI GGCC 1 cut(s) 1519
BtgI CCRYGG 1 cut(s) 2102
BtsCI GGATG 3 cut(s) 1368, 1498, 2010
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 3 cut(s) 208, 1185, 1620
Cac8I GCNNGC 1 cut(s) 1160
CaiI CAGNNNCTG 1 cut(s) 1223
CciI TCATGA 1 cut(s) 931
CfoI GCGC 1 cut(s) 1136
Cfr13I GGNCC 2 cut(s) 20, 272
Csp6I GTAC 5 cut(s) 489, 708, 1164, 1382, 2069
CviQI GTAC 5 cut(s) 489, 708, 1164, 1382, 2069
DdeI CTNAG 5 cut(s) 73, 525, 1224, 1623, 1635
EaeI YGGCCR 1 cut(s) 1517
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco130I CCWWGG 3 cut(s) 445, 1520, 2102
Eco31I GGTCTC 1 cut(s) 992
Eco32I GATATC 1 cut(s) 613
Eco47I GGWCC 2 cut(s) 20, 272
Eco57I CTGAAG 2 cut(s) 554, 1424
Eco88I CYCGRG 2 cut(s) 33, 1509
EcoO109I RGGNCCY 2 cut(s) 20, 272
EcoRI GAATTC 1 cut(s) 647
EcoRII CCWGG 1 cut(s) 1931
EcoRV GATATC 1 cut(s) 613
EcoT14I CCWWGG 3 cut(s) 445, 1520, 2102
EcoT22I ATGCAT 2 cut(s) 211, 858
ErhI CCWWGG 3 cut(s) 445, 1520, 2102
FalI AAGNNNNNCTT 2 cut(s) 1755, 1787
FaqI GGGAC 2 cut(s) 840, 856
FauI CCCGC 1 cut(s) 816
FauNDI CATATG 1 cut(s) 1293
FbaI TGATCA 3 cut(s) 481, 1441, 1539
Fnu4HI GCNGC 5 cut(s) 147, 504, 507, 1517, 2075
FokI GGATG 3 cut(s) 1355, 1505, 2017
Fsp4HI GCNGC 5 cut(s) 147, 504, 507, 1517, 2075
FspBI CTAG 5 cut(s) 297, 606, 795, 816, 1452
GlaI GCGC 1 cut(s) 1135
GluI GCNGC 5 cut(s) 147, 504, 507, 1517, 2075
HaeIII GGCC 1 cut(s) 1519
HapII CCGG 1 cut(s) 92
HhaI GCGC 1 cut(s) 1136
Hin6I GCGC 1 cut(s) 1134
HinP1I GCGC 1 cut(s) 1134
HincII GTYRAC 1 cut(s) 1899
HindII GTYRAC 1 cut(s) 1899
HindIII AAGCTT 1 cut(s) 1156
HpaII CCGG 1 cut(s) 92
HphI GGTGA 2 cut(s) 550, 1109
Hpy166II GTNNAC 6 cut(s) 254, 416, 700, 1876, 1888, 1899
Hpy188I TCNGA 7 cut(s) 76, 534, 558, 1056, 1219, 1225, 1834
Hpy8I GTNNAC 6 cut(s) 254, 416, 700, 1876, 1888, 1899
HpyAV CCTTC 7 cut(s) 242, 529, 553, 886, 1009, 2029, 2056
HpyCH4III ACNGT 4 cut(s) 84, 712, 1168, 1947
HpyCH4IV ACGT 3 cut(s) 691, 837, 2028
HpyF10VI GCNNNNNNNGC 1 cut(s) 1522
HpyF3I CTNAG 5 cut(s) 73, 525, 1224, 1623, 1635
HpySE526I ACGT 3 cut(s) 691, 837, 2028
HspAI GCGC 1 cut(s) 1134
Ksp22I TGATCA 3 cut(s) 481, 1441, 1539
Lsp1109I GCAGC 4 cut(s) 133, 490, 493, 2086
LweI GCATC 5 cut(s) 133, 196, 374, 518, 1561
MaeI CTAG 5 cut(s) 297, 606, 795, 816, 1452
MaeII ACGT 3 cut(s) 691, 837, 2028
MaeIII GTNAC 5 cut(s) 538, 742, 1329, 1460, 1977
MfeI CAATTG 1 cut(s) 369
MflI RGATCY 2 cut(s) 1588, 1663
MlyI GAGTC 2 cut(s) 52, 523
MmeI TCCRAC 5 cut(s) 102, 247, 439, 1003, 1192
Mph1103I ATGCAT 2 cut(s) 211, 858
MseI TTAA 6 cut(s) 642, 806, 876, 1106, 1143, 1607
MslI CAYNNNNRTG 4 cut(s) 956, 1560, 1625, 2107
MspCI CTTAAG 1 cut(s) 875
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 1933
MunI CAATTG 1 cut(s) 369
Mva1269I GAATGC 1 cut(s) 209
MvaI CCWGG 1 cut(s) 1933
MwoI GCNNNNNNNGC 1 cut(s) 1522
NcoI CCATGG 1 cut(s) 2102
NdeI CATATG 1 cut(s) 1293
NlaIV GGNNCC 1 cut(s) 1027
NmuCI GTSAC 3 cut(s) 538, 1329, 1460
NsiI ATGCAT 2 cut(s) 211, 858
NspI RCATGY 3 cut(s) 743, 1659, 1795
NspV TTCGAA 1 cut(s) 230
PaeR7I CTCGAG 2 cut(s) 33, 1509
PagI TCATGA 1 cut(s) 931
PasI CCCWGGG 1 cut(s) 1932
PctI GAATGC 1 cut(s) 209
PfeI GAWTC 9 cut(s) 620, 670, 967, 1220, 1256, 1314, 1430, 1705, 1972
PflFI GACNNNGTC 3 cut(s) 399, 1116, 1903
PkrI GCNGC 5 cut(s) 148, 505, 508, 1518, 2076
PleI GAGTC 2 cut(s) 52, 523
PpsI GAGTC 2 cut(s) 52, 523
PpuMI RGGWCCY 2 cut(s) 20, 272
PshBI ATTAAT 2 cut(s) 642, 806
Psp5II RGGWCCY 2 cut(s) 20, 272
Psp6I CCWGG 1 cut(s) 1931
PspGI CCWGG 1 cut(s) 1931
PspN4I GGNNCC 1 cut(s) 1027
PspPI GGNCC 2 cut(s) 20, 272
PspPPI RGGWCCY 2 cut(s) 20, 272
PspXI VCTCGAGB 1 cut(s) 1509
PstI CTGCAG 1 cut(s) 2076
PstNI CAGNNNCTG 1 cut(s) 1223
PsuI RGATCY 2 cut(s) 1588, 1663
PsyI GACNNNGTC 3 cut(s) 399, 1116, 1903
RsaI GTAC 5 cut(s) 490, 709, 1165, 1383, 2070
RsaNI GTAC 5 cut(s) 489, 708, 1164, 1382, 2069
RseI CAYNNNNRTG 4 cut(s) 956, 1560, 1625, 2107
SaqAI TTAA 6 cut(s) 642, 806, 876, 1106, 1143, 1607
SatI GCNGC 5 cut(s) 147, 504, 507, 1517, 2075
Sau96I GGNCC 2 cut(s) 20, 272
SchI GAGTC 2 cut(s) 52, 523
ScrFI CCNGG 1 cut(s) 1933
SfaNI GCATC 5 cut(s) 133, 196, 374, 518, 1561
SfcI CTRYAG 2 cut(s) 753, 2072
Sfr274I CTCGAG 2 cut(s) 33, 1509
SfuI TTCGAA 1 cut(s) 230
SinI GGWCC 2 cut(s) 20, 272
SlaI CTCGAG 2 cut(s) 33, 1509
SmiMI CAYNNNNRTG 4 cut(s) 956, 1560, 1625, 2107
SmlI CTYRAG 6 cut(s) 33, 767, 875, 1193, 1509, 1772
SmoI CTYRAG 6 cut(s) 33, 767, 875, 1193, 1509, 1772
SsiI CCGC 3 cut(s) 823, 998, 1516
SspMI CTAG 5 cut(s) 297, 606, 795, 816, 1452
StyD4I CCNGG 1 cut(s) 1931
StyI CCWWGG 3 cut(s) 445, 1520, 2102
TaaI ACNGT 4 cut(s) 84, 712, 1168, 1947
TaiI ACGT 3 cut(s) 694, 840, 2031
TaqI TCGA 5 cut(s) 34, 230, 337, 1510, 1717
TatI WGTACW 1 cut(s) 488
TauI GCSGC 1 cut(s) 1519
TfiI GAWTC 9 cut(s) 620, 670, 967, 1220, 1256, 1314, 1430, 1705, 1972
Tru1I TTAA 6 cut(s) 642, 806, 876, 1106, 1143, 1607
Tru9I TTAA 6 cut(s) 642, 806, 876, 1106, 1143, 1607
TscAI CASTG 3 cut(s) 208, 1185, 1627
TseFI GTSAC 3 cut(s) 538, 1329, 1460
TseI GCWGC 4 cut(s) 146, 503, 506, 2074
Tsp45I GTSAC 3 cut(s) 538, 1329, 1460
TspRI CASTG 3 cut(s) 208, 1185, 1627
Tth111I GACNNNGTC 3 cut(s) 399, 1116, 1903
Vha464I CTTAAG 1 cut(s) 875
VpaK11BI GGWCC 2 cut(s) 20, 272
VspI ATTAAT 2 cut(s) 642, 806
XapI RAATTY 8 cut(s) 107, 517, 647, 1138, 1245, 1827, 1960, 2096
XceI RCATGY 3 cut(s) 743, 1659, 1795
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XhoI CTCGAG 2 cut(s) 33, 1509
XspI CTAG 5 cut(s) 297, 606, 795, 816, 1452
Zsp2I ATGCAT 2 cut(s) 211, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.