Rmu_sc0000724.1_g000020

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000724.1
OG0000122
Physical Location & Seq
Reverse (-)
103212 .. 104031
820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000724.1_g000020.1.cds

Sequence Viewer

Length: 627 bp
atgaatgaaaagcagcatattcgaaacattattgatcagaatgtacatcaatcccgaatagattatcgagttcgactagaagcttcagttgattgcatttggtttcttctaagacaaggccttgcctttcgtggtcatgacgagttagagaactcaagcaatcaagttgatgaatctagggatgtatctgtgaaggagcaaatggctgttacctttcgttatgtggataaaaatgggtgtgtgattgaatccttcatagtcattgaacatgtagcgagtactactgcaatctcacttaagaaagctatagatgcactattctctaaacatggattaagcttctctaggctatatggtcaaggttacgatggcgccaataatatgaatggagaacttagtggtctgaagacccttattttgaaggagaactcaagtgctttttatgttcattatttcgcacatcagcttcaattagctttggttggtatagccaagaaacatgaaattgtaggtgctttctttgcatcaattggtagtgttgtaaacattgttggggcatcttctaaacgtcaagacattcttctagaaaagcaagctcttaaagtcattgaggcacttaaagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

208

Amino Acids

23.28

Weight (kDa)

7.82

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 371
AcuI CTGAAG 2 cut(s) 69, 425
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 2 cut(s) 45, 280
AflII CTTAAG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 268
AgsI TTSAA 4 cut(s) 248, 266, 421, 470
AluBI AGCT 6 cut(s) 83, 305, 339, 466, 476, 596
AluI AGCT 6 cut(s) 83, 305, 339, 466, 476, 596
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 1 cut(s) 13
ArsI GACNNNNNNTTYG 2 cut(s) 400, 432
AspLEI GCGC 1 cut(s) 374
AsuII TTCGAA 1 cut(s) 22
BanI GGYRCC 1 cut(s) 371
BbsI GAAGAC 1 cut(s) 413
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 362
BcgI CGANNNNNNTGC 1 cut(s) 36
BclI TGATCA 1 cut(s) 34
BfaI CTAG 4 cut(s) 77, 177, 345, 584
BfmI CTRYAG 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 375
BfrI CTTAAG 1 cut(s) 296
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmcAI AGTACT 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 373
BmsI GCATC 3 cut(s) 301, 533, 566
BpiI GAAGAC 1 cut(s) 413
Bpu14I TTCGAA 1 cut(s) 22
BpuEI CTTGAG 2 cut(s) 139, 415
BsaHI GRCGYC 1 cut(s) 372
BseGI GGATG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 25
BshFI GGCC 1 cut(s) 120
BshNI GGYRCC 1 cut(s) 371
BsnI GGCC 1 cut(s) 120
Bsp119I TTCGAA 1 cut(s) 22
Bsp1407I TGTACA 1 cut(s) 43
Bsp143I GATC 1 cut(s) 34
BspANI GGCC 1 cut(s) 120
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 373
BspT104I TTCGAA 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 371
BspTI CTTAAG 1 cut(s) 296
BsrGI TGTACA 1 cut(s) 43
BssMI GATC 1 cut(s) 34
BssNI GRCGYC 1 cut(s) 372
BstACI GRCGYC 1 cut(s) 372
BstAFI CTTAAG 1 cut(s) 296
BstAUI TGTACA 1 cut(s) 43
BstBI TTCGAA 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 594
BstDEI CTNAG 2 cut(s) 110, 395
BstF5I GGATG 1 cut(s) 187
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 1 cut(s) 374
BstKTI GATC 1 cut(s) 37
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 2 cut(s) 311, 521
BstNSI RCATGY 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 306
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 413
BsuRI GGCC 1 cut(s) 120
BtsCI GGATG 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 594
CciI TCATGA 1 cut(s) 136
CfoI GCGC 1 cut(s) 374
Csp6I GTAC 2 cut(s) 44, 279
CviAII CATG 4 cut(s) 137, 269, 329, 500
CviQI GTAC 2 cut(s) 44, 279
DdeI CTNAG 2 cut(s) 110, 395
DinI GGCGCC 1 cut(s) 373
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
Eco147I AGGCCT 1 cut(s) 120
Eco57I CTGAAG 2 cut(s) 69, 425
EgeI GGCGCC 1 cut(s) 373
EheI GGCGCC 1 cut(s) 373
FaeI CATG 4 cut(s) 140, 272, 332, 503
FalI AAGNNNNNCTT 2 cut(s) 564, 596
FatI CATG 4 cut(s) 136, 268, 328, 499
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 14
FspBI CTAG 4 cut(s) 77, 177, 345, 584
GlaI GCGC 1 cut(s) 373
GluI GCNGC 1 cut(s) 14
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 1 cut(s) 120
HhaI GCGC 1 cut(s) 374
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 4 cut(s) 140, 272, 332, 503
Hin6I GCGC 1 cut(s) 372
HinP1I GCGC 1 cut(s) 372
HindIII AAGCTT 2 cut(s) 81, 337
HinfI GANTC 2 cut(s) 173, 248
Hpy166II GTNNAC 1 cut(s) 544
Hpy188I TCNGA 2 cut(s) 39, 405
Hpy188III TCNNGA 4 cut(s) 54, 137, 572, 584
Hpy8I GTNNAC 1 cut(s) 544
HpyAV CCTTC 3 cut(s) 187, 262, 415
HpyCH4IV ACGT 1 cut(s) 568
HpyCH4V TGCA 4 cut(s) 96, 287, 314, 524
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 521
HpyF3I CTNAG 2 cut(s) 110, 395
HpySE526I ACGT 1 cut(s) 568
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 4 cut(s) 140, 272, 332, 503
HspAI GCGC 1 cut(s) 372
KasI GGCGCC 1 cut(s) 371
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 3 cut(s) 301, 533, 566
MaeI CTAG 4 cut(s) 77, 177, 345, 584
MaeII ACGT 1 cut(s) 568
MaeIII GTNAC 2 cut(s) 208, 362
MalI GATC 1 cut(s) 36
MboI GATC 1 cut(s) 34
MboII GAAGA 4 cut(s) 98, 418, 552, 572
MfeI CAATTG 1 cut(s) 528
MluCI AATT 3 cut(s) 470, 504, 528
Mly113I GGCGCC 1 cut(s) 372
MnlI CCTC 1 cut(s) 604
MseI TTAA 4 cut(s) 297, 335, 600, 618
MspCI CTTAAG 1 cut(s) 296
MunI CAATTG 1 cut(s) 528
MwoI GCNNNNNNNGC 2 cut(s) 311, 521
NarI GGCGCC 1 cut(s) 372
NdeII GATC 1 cut(s) 34
NlaIII CATG 4 cut(s) 140, 272, 332, 503
NlaIV GGNNCC 1 cut(s) 373
NspI RCATGY 1 cut(s) 272
NspV TTCGAA 1 cut(s) 22
PagI TCATGA 1 cut(s) 136
PceI AGGCCT 1 cut(s) 120
PciI ACATGT 1 cut(s) 268
PfeI GAWTC 2 cut(s) 173, 248
PkrI GCNGC 1 cut(s) 15
PluTI GGCGCC 1 cut(s) 375
PscI ACATGT 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 373
RsaI GTAC 2 cut(s) 45, 280
RsaNI GTAC 2 cut(s) 44, 279
SaqAI TTAA 4 cut(s) 297, 335, 600, 618
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 1 cut(s) 34
ScaI AGTACT 1 cut(s) 280
SfaNI GCATC 3 cut(s) 301, 533, 566
SfcI CTRYAG 1 cut(s) 306
SfoI GGCGCC 1 cut(s) 373
SfuI TTCGAA 1 cut(s) 22
SmlI CTYRAG 3 cut(s) 154, 296, 430
SmoI CTYRAG 3 cut(s) 154, 296, 430
Sse9I AATT 3 cut(s) 470, 504, 528
SseBI AGGCCT 1 cut(s) 120
SspDI GGCGCC 1 cut(s) 371
SspMI CTAG 4 cut(s) 77, 177, 345, 584
StuI AGGCCT 1 cut(s) 120
TaiI ACGT 1 cut(s) 571
TaqI TCGA 3 cut(s) 22, 67, 73
TasI AATT 3 cut(s) 470, 504, 528
TatI WGTACW 2 cut(s) 43, 278
TfiI GAWTC 2 cut(s) 173, 248
Tru1I TTAA 4 cut(s) 297, 335, 600, 618
Tru9I TTAA 4 cut(s) 297, 335, 600, 618
TseI GCWGC 1 cut(s) 13
TspDTI ATGAA 7 cut(s) 17, 21, 186, 244, 398, 437, 516
Vha464I CTTAAG 1 cut(s) 296
XbaI TCTAGA 1 cut(s) 583
XceI RCATGY 1 cut(s) 272
XspI CTAG 4 cut(s) 77, 177, 345, 584
ZrmI AGTACT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.