Rroxscaffold_1G00041160

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000122
Physical Location & Seq
Forward (+)
58923258 .. 58926117
2860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00041160.1

Sequence Viewer

Length: 1605 bp
ATGGGTCCACAATCTTCGGAGCAAGTCTTGCAGGATCGTTTGGAAATTTTGTCCACAATAGAACATGTTAAATGGGTTACAGAAAAGGGATATAGATTTACGCTTGATTTCTTTCAAGGGATGGAGTTTTTTTTAACGTGGAATGGCGAACTTCCGAAATTGGCAGATGTTCCTGGAAATTCCAAGTATTCGTCACTGAAAGTTCAAAAGGAGATCTTGAATATTCTCGGTGGCAAGGTGAGGAATAAGATTCGTGAAGAAGTTGGAGATTCCAAATTCTGCATTATCCTTGACAAAGCTTGTGATCAATCTAAGAGGCAACTATTGATTGTTATCCTGAGATTTGTGGACTGTCGAGGTTGTGTTCAAGAACGAATGTTTGAAGTTGTAGTTGTTGATGATGACTTTACTGCCCCAGCTCTTGAAAAAGAGATATCCAATTTACTTGCTCGGAATAATCTCTGTGTCAGAAATATGCGAGGGCAAGGGTACAATGGTGCAAGCAGTATGCGTTATGCATGGAATACATTACAAGCATCGTTTCTCAGAGATTCCCCATGTGCATATTATGTACATTGCTTTGCTCATGATCTGCATGTAGCATTGTTCACTGCGTCTTACGAAGTATTTGCTATGTACATATTTTTTAAAGCGCTGCGCTCCATTGTCAGTTTTCTTAGTGTTTACTCCAATTGTCATTCTGATCTTAAACCAGCTGGAGATGTTGAAATTGCAGATTTGGTTGCTTTTGTAGGGCTTGAGTCACAGAGTTTCCAACGAGACCCAACTGTGAGTTGGAGCTTCCATTATGGTTTGATTACTAGATTGATTGATATGTTTGATGCTACTTGCACATTTCTTGAAAACATTGAAACAAGTAGACTGAATGCGGATATACGTGGGGAAGCTTGGGGTATTTATAACGTGGTAGCATCCTTCGAATTTGTATTTAGCTTGCTGTTGTTTAAAGAAATTATGGAAATCACTGGTGAAGTTTGTCAAGCGGTGCAACGGAAATCTCAGCCCATCTTGAATGCTTTTGACTTGGTCCCAAGTACAAAAACTATCCTTCAGAAGTTTCAACAAGATGGTTGGGATAATTTCATTGGAAGTGTGGTATCATTTTCTGAAAGAAATTCCATAAATATTCCTGATATGGGTTCTCAACATAGGGTGCACAAATATCGTTCTTCTCAGCAAGAATTTATTACAGTTGAGCATCATTACCACATTGATATATTCAATGCGGTAATAGATTTACAGTTGAAGGAGTTAAACAGTAGGTTTCCACAGCAAACAATGGAACTTTTTATTCTTAGCTCAGCTTTAGATCCTACCGATGCATTTAAATCATTTAAAATTGATGATATTTGCAATCTTGCTGGGAAGTTCTATCCTCAAGATTTCACTCAAGATGAGATGCATGCTTTGAGACTACAATTGAAAAACTATGAGCTTGAAGTTCTTTGTGATCCACAGTTTCGGAATATGTCTTCTCTATCTGAACTTTGTCAAGGATTAATTGAAACAGGAAAGTCAGCCTTGTATTTCTTAATCGACAGATTGATTCGTTTAGTGCTGATCTTCCAGTTCATACGGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

534

Amino Acids

61.43

Weight (kDa)

5.49

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 54 - 175 2.2e-18 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 921
AccI GTMKAC 1 cut(s) 880
AciI CCGC 3 cut(s) 890, 1004, 1247
AclWI GGATC 3 cut(s) 42, 1325, 1466
AcsI RAATTY 6 cut(s) 45, 178, 275, 941, 1135, 1202
AcuI CTGAAG 1 cut(s) 1055
AfaI GTAC 4 cut(s) 491, 573, 638, 1057
AfeI AGCGCT 1 cut(s) 654
AfiI CCNNNNNNNGG 1 cut(s) 1157
AflIII ACRYGT 1 cut(s) 64
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 9 cut(s) 299, 419, 716, 801, 908, 954, 1320, 1325, 1456
AluI AGCT 9 cut(s) 299, 419, 716, 801, 908, 954, 1320, 1325, 1456
Alw21I GWGCWC 1 cut(s) 1179
Alw26I GTCTC 2 cut(s) 774, 1426
Alw44I GTGCAC 1 cut(s) 1175
AlwI GGATC 3 cut(s) 42, 1325, 1466
Aor51HI AGCGCT 1 cut(s) 654
ApaLI GTGCAC 1 cut(s) 1175
ApeKI GCWGC 1 cut(s) 655
ApoI RAATTY 6 cut(s) 45, 178, 275, 941, 1135, 1202
AseI ATTAAT 1 cut(s) 1520
AspLEI GCGC 2 cut(s) 655, 660
AspS9I GGNCC 2 cut(s) 5, 1048
AsuHPI GGTGA 2 cut(s) 250, 1001
AsuII TTCGAA 1 cut(s) 939
AvaII GGWCC 2 cut(s) 5, 1048
BaeGI GKGCMC 1 cut(s) 1179
BaeI ACNNNNGTAYC 2 cut(s) 481, 514
BbsI GAAGAC 1 cut(s) 1485
Bbv12I GWGCWC 1 cut(s) 1179
BbvI GCAGC 1 cut(s) 642
BccI CCATC 3 cut(s) 115, 1034, 1082
BcgI CGANNNNNNTGC 4 cut(s) 611, 645, 1166, 1200
BciT130I CCWGG 1 cut(s) 174
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 2 cut(s) 774, 1426
BfaI CTAG 1 cut(s) 822
BfoI RGCGCY 1 cut(s) 656
BglII AGATCT 1 cut(s) 213
BisI GCNGC 1 cut(s) 656
BlpI GCTNAGC 1 cut(s) 1321
BlsI GCNGC 1 cut(s) 657
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 2 cut(s) 5, 1048
BmgT120I GGNCC 2 cut(s) 5, 1048
BmiI GGNNCC 2 cut(s) 6, 1050
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 6 cut(s) 545, 832, 941, 1228, 1330, 1410
BpiI GAAGAC 1 cut(s) 1485
BpmI CTGGAG 1 cut(s) 738
Bpu1102I GCTNAGC 1 cut(s) 1321
Bpu14I TTCGAA 1 cut(s) 939
BpuEI CTTGAG 3 cut(s) 779, 1383, 1395
BsaAI YACGTR 1 cut(s) 899
BsaBI GATNNNNATC 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 774
Bsc4I CCNNNNNNNGG 1 cut(s) 1157
Bse1I ACTGG 2 cut(s) 991, 1588
Bse3DI GCAATG 1 cut(s) 574
Bse8I GATNNNNATC 1 cut(s) 332
BseBI CCWGG 1 cut(s) 174
BseGI GGATG 2 cut(s) 126, 932
BseJI GATNNNNATC 1 cut(s) 332
BseLI CCNNNNNNNGG 1 cut(s) 1157
BseMI GCAATG 1 cut(s) 574
BseMII CTCAG 5 cut(s) 329, 559, 1034, 1208, 1335
BseNI ACTGG 2 cut(s) 991, 1588
BseSI GKGCMC 1 cut(s) 1179
BseXI GCAGC 1 cut(s) 642
BseYI CCCAGC 2 cut(s) 415, 1382
BsiHKAI GWGCWC 1 cut(s) 1179
BslFI GGGAC 1 cut(s) 1034
BslI CCNNNNNNNGG 1 cut(s) 1157
BsmAI GTCTC 2 cut(s) 774, 1426
BsmFI GGGAC 1 cut(s) 1034
BsmI GAATGC 2 cut(s) 892, 1039
Bso31I GGTCTC 1 cut(s) 774
Bsp119I TTCGAA 1 cut(s) 939
Bsp1286I GDGCHC 1 cut(s) 1179
Bsp1407I TGTACA 2 cut(s) 571, 636
Bsp143I GATC 8 cut(s) 34, 213, 304, 589, 703, 1330, 1471, 1581
Bsp1720I GCTNAGC 1 cut(s) 1321
BspACI CCGC 3 cut(s) 890, 1004, 1247
BspCNI CTCAG 5 cut(s) 330, 558, 1033, 1207, 1334
BspHI TCATGA 1 cut(s) 586
BspLI GGNNCC 2 cut(s) 6, 1050
BspPI GGATC 3 cut(s) 42, 1325, 1466
BspT104I TTCGAA 1 cut(s) 939
BspTNI GGTCTC 1 cut(s) 774
BsrDI GCAATG 1 cut(s) 574
BsrGI TGTACA 2 cut(s) 571, 636
BsrI ACTGG 2 cut(s) 991, 1588
BssMI GATC 8 cut(s) 34, 213, 304, 589, 703, 1330, 1471, 1581
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 6 cut(s) 353, 790, 1213, 1263, 1280, 1479
BstAPI GCANNNNNTGC 1 cut(s) 28
BstAUI TGTACA 2 cut(s) 571, 636
BstBAI YACGTR 1 cut(s) 899
BstBI TTCGAA 1 cut(s) 939
BstC8I GCNNGC 3 cut(s) 502, 956, 1425
BstDEI CTNAG 8 cut(s) 312, 338, 545, 677, 1020, 1194, 1316, 1321
BstF5I GGATG 2 cut(s) 126, 932
BstH2I RGCGCY 1 cut(s) 656
BstHHI GCGC 2 cut(s) 655, 660
BstKTI GATC 8 cut(s) 37, 216, 307, 592, 706, 1333, 1474, 1584
BstMAI GTCTC 2 cut(s) 774, 1426
BstMBI GATC 8 cut(s) 34, 213, 304, 589, 703, 1330, 1471, 1581
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 3 cut(s) 68, 599, 1427
BstSCI CCNGG 1 cut(s) 172
BstSLI GKGCMC 1 cut(s) 1179
BstV1I GCAGC 1 cut(s) 642
BstV2I GAAGAC 1 cut(s) 1485
BstX2I RGATCY 2 cut(s) 213, 1330
BstYI RGATCY 2 cut(s) 213, 1330
BtsCI GGATG 2 cut(s) 126, 932
BtsI GCAGTG 1 cut(s) 609
BtsIMutI CAGTG 3 cut(s) 194, 609, 984
Cac8I GCNNGC 3 cut(s) 502, 956, 1425
CciI TCATGA 1 cut(s) 586
CfoI GCGC 2 cut(s) 655, 660
Cfr13I GGNCC 2 cut(s) 5, 1048
CseI GACGC 1 cut(s) 603
Csp6I GTAC 4 cut(s) 490, 572, 637, 1056
CviAII CATG 6 cut(s) 65, 519, 558, 587, 596, 1424
CviQI GTAC 4 cut(s) 490, 572, 637, 1056
DdeI CTNAG 8 cut(s) 312, 338, 545, 677, 1020, 1194, 1316, 1321
DpnI GATC 8 cut(s) 36, 215, 306, 591, 705, 1332, 1473, 1583
DpnII GATC 8 cut(s) 34, 213, 304, 589, 703, 1330, 1471, 1581
DraI TTTAAA 4 cut(s) 649, 967, 1348, 1357
Eco31I GGTCTC 1 cut(s) 774
Eco32I GATATC 1 cut(s) 435
Eco47I GGWCC 2 cut(s) 5, 1048
Eco47III AGCGCT 1 cut(s) 654
Eco57I CTGAAG 1 cut(s) 1055
EcoRII CCWGG 1 cut(s) 172
EcoRV GATATC 1 cut(s) 435
EcoT22I ATGCAT 3 cut(s) 520, 1345, 1425
FaeI CATG 6 cut(s) 68, 522, 561, 590, 599, 1427
FalI AAGNNNNNCTT 4 cut(s) 200, 232, 1526, 1558
FaqI GGGAC 1 cut(s) 1034
FatI CATG 6 cut(s) 64, 518, 557, 586, 595, 1423
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 1 cut(s) 880
Fnu4HI GCNGC 1 cut(s) 656
FokI GGATG 2 cut(s) 133, 919
Fsp4HI GCNGC 1 cut(s) 656
FspBI CTAG 1 cut(s) 822
GlaI GCGC 2 cut(s) 654, 659
GluI GCNGC 1 cut(s) 656
GsaI CCCAGC 2 cut(s) 419, 1386
GsuI CTGGAG 1 cut(s) 738
HaeII RGCGCY 1 cut(s) 656
HgaI GACGC 1 cut(s) 603
HhaI GCGC 2 cut(s) 655, 660
Hin1II CATG 6 cut(s) 68, 522, 561, 590, 599, 1427
Hin6I GCGC 2 cut(s) 653, 658
HinP1I GCGC 2 cut(s) 653, 658
HindIII AAGCTT 2 cut(s) 297, 906
HinfI GANTC 5 cut(s) 250, 269, 551, 761, 1567
HphI GGTGA 2 cut(s) 250, 1001
Hpy166II GTNNAC 7 cut(s) 8, 54, 349, 609, 685, 881, 1177
Hpy8I GTNNAC 7 cut(s) 8, 54, 349, 609, 685, 881, 1177
HpyAV CCTTC 3 cut(s) 946, 1079, 1261
HpyCH4III ACNGT 6 cut(s) 353, 790, 1213, 1263, 1280, 1479
HpyCH4IV ACGT 3 cut(s) 137, 898, 924
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpyF3I CTNAG 8 cut(s) 312, 338, 545, 677, 1020, 1194, 1316, 1321
HpySE526I ACGT 3 cut(s) 137, 898, 924
Hsp92II CATG 6 cut(s) 68, 522, 561, 590, 599, 1427
HspAI GCGC 2 cut(s) 653, 658
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 8 cut(s) 34, 213, 304, 589, 703, 1330, 1471, 1581
LmnI GCTCC 3 cut(s) 19, 665, 798
Lsp1109I GCAGC 1 cut(s) 642
LweI GCATC 6 cut(s) 545, 832, 941, 1228, 1330, 1410
MaeI CTAG 1 cut(s) 822
MaeII ACGT 3 cut(s) 137, 898, 924
MaeIII GTNAC 3 cut(s) 76, 192, 762
MalI GATC 8 cut(s) 36, 215, 306, 591, 705, 1332, 1473, 1583
MboI GATC 8 cut(s) 34, 213, 304, 589, 703, 1330, 1471, 1581
MboII GAAGA 5 cut(s) 6, 269, 1182, 1485, 1576
MfeI CAATTG 2 cut(s) 691, 1439
MflI RGATCY 2 cut(s) 213, 1330
MhlI GDGCHC 1 cut(s) 1179
MlyI GAGTC 1 cut(s) 770
MmeI TCCRAC 3 cut(s) 244, 776, 799
MnlI CCTC 5 cut(s) 234, 309, 350, 473, 1407
Mph1103I ATGCAT 3 cut(s) 520, 1345, 1425
MspA1I CMGCKG 1 cut(s) 716
MspR9I CCNGG 1 cut(s) 174
MteI GCGCNGCGC 1 cut(s) 656
MunI CAATTG 2 cut(s) 691, 1439
Mva1269I GAATGC 2 cut(s) 892, 1039
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 1 cut(s) 28
NdeII GATC 8 cut(s) 34, 213, 304, 589, 703, 1330, 1471, 1581
NlaIII CATG 6 cut(s) 68, 522, 561, 590, 599, 1427
NlaIV GGNNCC 2 cut(s) 6, 1050
NmuCI GTSAC 2 cut(s) 192, 762
NsiI ATGCAT 3 cut(s) 520, 1345, 1425
NspI RCATGY 3 cut(s) 68, 599, 1427
NspV TTCGAA 1 cut(s) 939
PaeI GCATGC 1 cut(s) 1427
PagI TCATGA 1 cut(s) 586
PciI ACATGT 1 cut(s) 64
PctI GAATGC 2 cut(s) 892, 1039
PfeI GAWTC 4 cut(s) 250, 269, 551, 1567
PflFI GACNNNGTC 1 cut(s) 1046
PfoI TCCNGGA 1 cut(s) 172
PkrI GCNGC 1 cut(s) 657
PleI GAGTC 1 cut(s) 769
PpsI GAGTC 1 cut(s) 769
Ppu21I YACGTR 1 cut(s) 899
PscI ACATGT 1 cut(s) 64
PshBI ATTAAT 1 cut(s) 1520
PsiI TTATAA 1 cut(s) 921
Psp6I CCWGG 1 cut(s) 172
PspFI CCCAGC 2 cut(s) 415, 1382
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 2 cut(s) 6, 1050
PspPI GGNCC 2 cut(s) 5, 1048
PsuI RGATCY 2 cut(s) 213, 1330
PsyI GACNNNGTC 1 cut(s) 1046
PvuII CAGCTG 1 cut(s) 716
RsaI GTAC 4 cut(s) 491, 573, 638, 1057
RsaNI GTAC 4 cut(s) 490, 572, 637, 1056
SatI GCNGC 1 cut(s) 656
Sau3AI GATC 8 cut(s) 34, 213, 304, 589, 703, 1330, 1471, 1581
Sau96I GGNCC 2 cut(s) 5, 1048
SchI GAGTC 1 cut(s) 770
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 1 cut(s) 1179
SfaNI GCATC 6 cut(s) 545, 832, 941, 1228, 1330, 1410
SfuI TTCGAA 1 cut(s) 939
SinI GGWCC 2 cut(s) 5, 1048
SmiI ATTTAAAT 1 cut(s) 1348
SmlI CTYRAG 3 cut(s) 758, 1398, 1410
SmoI CTYRAG 3 cut(s) 758, 1398, 1410
SphI GCATGC 1 cut(s) 1427
SsiI CCGC 3 cut(s) 890, 1004, 1247
SspI AATATT 2 cut(s) 223, 1147
SspMI CTAG 1 cut(s) 822
StyD4I CCNGG 1 cut(s) 172
SwaI ATTTAAAT 1 cut(s) 1348
TaaI ACNGT 6 cut(s) 353, 790, 1213, 1263, 1280, 1479
TaiI ACGT 3 cut(s) 140, 901, 927
TaqI TCGA 3 cut(s) 355, 939, 1557
TatI WGTACW 3 cut(s) 571, 636, 1055
TfiI GAWTC 4 cut(s) 250, 269, 551, 1567
TscAI CASTG 3 cut(s) 201, 616, 991
TseFI GTSAC 2 cut(s) 192, 762
TseI GCWGC 1 cut(s) 655
Tsp45I GTSAC 2 cut(s) 192, 762
TspDTI ATGAA 2 cut(s) 1093, 1582
TspGWI ACGGA 1 cut(s) 1027
TspRI CASTG 3 cut(s) 201, 616, 991
Tth111I GACNNNGTC 1 cut(s) 1046
VneI GTGCAC 1 cut(s) 1175
VpaK11BI GGWCC 2 cut(s) 5, 1048
VspI ATTAAT 1 cut(s) 1520
XapI RAATTY 6 cut(s) 45, 178, 275, 941, 1135, 1202
XceI RCATGY 3 cut(s) 68, 599, 1427
XcmI CCANNNNNNNNNTGG 1 cut(s) 792
XmiI GTMKAC 1 cut(s) 880
XspI CTAG 1 cut(s) 822
Zsp2I ATGCAT 3 cut(s) 520, 1345, 1425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.