FvH4_6g35121

Zinc finger MYM-type protein 1-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
27766715 .. 27769035
2321 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35121.t1

Sequence Viewer

Length: 1053 bp
ATGGAGAGATATTTAAACGAACATCAGTTTCTTGCTTATCATAATGATGAAGTGAGAGCAATTGCATTGAAGAATGCTCCTGAAAATCTTAAATTGACATCTCCTAGGATTCAAAAAGACATAATGAATGTTGTTGCTGTTGAAACTACAAATGTTATTATTAAAGATATTGGTGATGCTTTTTTCTCTATTCTAGTTGATGAGTCCAGAGATGTATCTGTAAAGGAGCAGATGGCTGTTATTTTTCGTTATGTGGATAAAAATGGTTATGTGATTGAATCCTTCATAGGCATTGAACATGTTGAGAGTACCACTGCTATGTCACTTGAGAGAGCTATAAATGCGCTATTTTCTAAACATGGATTAAACATCACTAGGCTACGTGGTCAAGGTTATGATGGCGCGAGTAATATGAGTGGAGAATTTAATGGTCTGAAGACACTTATTTTGAAGGAGAACTCGAGTACTTTTTATGTTCATTGTTTCACACATCAACTTCAATTAGCTCTTGTCGGTGTTGCCAAAAAACATGACATTGTTGGTGCATTCTTTATATCAGTGGTTAGGGTTGTAAACATTGTTGGGGCATCTTCTAAACGCCGAGACATTTTTCGAGCAAAGCAATCTATTAAGGTCATTGAGGCACTTCAAATTAGAGAACTTACAAGTGGACAAGGAAGCATTCAGTTGCTATTTCTAAAGATTCAATTAGAGACATATATTGATGATATGCGGTCTAATGACAAGTTTCAAGAATTGCAAGGGATTGCTAATCTTGCAAAGAAATTAGTTGAGACAAGAAAGCATAAGACATATTCTTATGTTTATTTGCTGATCACTTTGGCGCTGGTACTTCCTGTTGCAACGGTGTTTATTGAAAGAGCTTTCTCTGCCATGAATATCATAAAGAATCGAATTCGCAATCGAATGAGAGACCAATGGATGAATGACAACTTAGTTGTATATCTTGAGAAAGATATATTCAGTTCCATAGACAATGAGTCTATTATTCAACGATTTCAAAAGATGGCACCTCGTAGAGGACAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

351

Amino Acids

40.01

Weight (kDa)

9.35

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4371 PF14291 9 - 144 7.4e-46 Domain of unknown function (DUF4371)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1030
AccII CGCG 1 cut(s) 404
AciI CCGC 1 cut(s) 733
AcsI RAATTY 2 cut(s) 422, 915
AcuI CTGAAG 1 cut(s) 455
AfaI GTAC 3 cut(s) 310, 466, 852
AfiI CCNNNNNNNGG 1 cut(s) 1040
AflIII ACRYGT 1 cut(s) 298
AhdI GACNNNNNGTC 1 cut(s) 1000
AluBI AGCT 3 cut(s) 335, 506, 884
AluI AGCT 3 cut(s) 335, 506, 884
Alw26I GTCTC 4 cut(s) 597, 707, 788, 927
Ama87I CYCGRG 1 cut(s) 460
ApoI RAATTY 2 cut(s) 422, 915
ArsI GACNNNNNNTTYG 2 cut(s) 430, 462
AspA2I CCTAGG 1 cut(s) 104
AspLEI GCGC 3 cut(s) 346, 404, 847
AsuHPI GGTGA 1 cut(s) 185
AvaI CYCGRG 1 cut(s) 460
AvrII CCTAGG 1 cut(s) 104
BanI GGYRCC 1 cut(s) 1030
BbsI GAAGAC 1 cut(s) 443
BccI CCATC 3 cut(s) 226, 392, 1021
BclI TGATCA 1 cut(s) 834
BcoDI GTCTC 4 cut(s) 597, 707, 788, 927
BfaI CTAG 3 cut(s) 105, 194, 375
BfoI RGCGCY 1 cut(s) 848
BlnI CCTAGG 1 cut(s) 104
BmcAI AGTACT 1 cut(s) 466
BmeRI GACNNNNNGTC 1 cut(s) 1000
BmeT110I CYCGRG 1 cut(s) 460
BmiI GGNNCC 1 cut(s) 1032
BmsI GCATC 2 cut(s) 166, 596
BpiI GAAGAC 1 cut(s) 443
BpuEI CTTGAG 2 cut(s) 347, 989
BsaAI YACGTR 1 cut(s) 383
BsaI GGTCTC 1 cut(s) 927
BsaJI CCNNGG 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 1040
BseDI CCNNGG 1 cut(s) 104
BseGI GGATG 1 cut(s) 948
BseLI CCNNNNNNNGG 1 cut(s) 1040
Bsh1236I CGCG 1 cut(s) 404
BshNI GGYRCC 1 cut(s) 1030
BsiHKCI CYCGRG 1 cut(s) 460
BslI CCNNNNNNNGG 1 cut(s) 1040
BsmAI GTCTC 4 cut(s) 597, 707, 788, 927
BsmI GAATGC 3 cut(s) 79, 545, 681
Bso31I GGTCTC 1 cut(s) 927
BsoBI CYCGRG 1 cut(s) 460
Bsp143I GATC 1 cut(s) 834
BspACI CCGC 1 cut(s) 733
BspFNI CGCG 1 cut(s) 404
BspLI GGNNCC 1 cut(s) 1032
BspT107I GGYRCC 1 cut(s) 1030
BspTNI GGTCTC 1 cut(s) 927
BssECI CCNNGG 1 cut(s) 104
BssMI GATC 1 cut(s) 834
BssT1I CCWWGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 868
BstBAI YACGTR 1 cut(s) 383
BstDEI CTNAG 1 cut(s) 955
BstENI CCTNNNNNAGG 1 cut(s) 1038
BstF5I GGATG 1 cut(s) 948
BstFNI CGCG 1 cut(s) 404
BstH2I RGCGCY 1 cut(s) 848
BstHHI GCGC 3 cut(s) 346, 404, 847
BstKTI GATC 1 cut(s) 837
BstMAI GTCTC 4 cut(s) 597, 707, 788, 927
BstMBI GATC 1 cut(s) 834
BstMWI GCNNNNNNNGC 3 cut(s) 341, 776, 890
BstNSI RCATGY 1 cut(s) 302
BstUI CGCG 1 cut(s) 404
BstV2I GAAGAC 1 cut(s) 443
BtsCI GGATG 1 cut(s) 948
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 2 cut(s) 312, 564
CfoI GCGC 3 cut(s) 346, 404, 847
Csp6I GTAC 3 cut(s) 309, 465, 851
CviAII CATG 4 cut(s) 299, 359, 530, 895
CviJI RGCY 5 cut(s) 236, 335, 379, 506, 884
CviKI_1 RGCY 5 cut(s) 236, 335, 379, 506, 884
CviQI GTAC 3 cut(s) 309, 465, 851
DdeI CTNAG 1 cut(s) 955
DpnI GATC 1 cut(s) 836
DpnII GATC 1 cut(s) 834
DraI TTTAAA 1 cut(s) 15
DriI GACNNNNNGTC 1 cut(s) 1000
Eam1105I GACNNNNNGTC 1 cut(s) 1000
Eco130I CCWWGG 1 cut(s) 104
Eco31I GGTCTC 1 cut(s) 927
Eco57I CTGAAG 1 cut(s) 455
Eco88I CYCGRG 1 cut(s) 460
EcoNI CCTNNNNNAGG 1 cut(s) 1038
EcoRI GAATTC 1 cut(s) 915
EcoT14I CCWWGG 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 104
FaeI CATG 4 cut(s) 302, 362, 533, 898
FatI CATG 4 cut(s) 298, 358, 529, 894
FbaI TGATCA 1 cut(s) 834
FokI GGATG 1 cut(s) 955
FspBI CTAG 3 cut(s) 105, 194, 375
GlaI GCGC 3 cut(s) 345, 403, 846
HaeII RGCGCY 1 cut(s) 848
HhaI GCGC 3 cut(s) 346, 404, 847
Hin1II CATG 4 cut(s) 302, 362, 533, 898
Hin6I GCGC 3 cut(s) 344, 402, 845
HinP1I GCGC 3 cut(s) 344, 402, 845
HinfI GANTC 6 cut(s) 109, 203, 278, 703, 910, 1001
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 2 cut(s) 574, 671
Hpy188I TCNGA 1 cut(s) 435
Hpy188III TCNNGA 4 cut(s) 80, 207, 752, 968
Hpy8I GTNNAC 2 cut(s) 574, 671
HpyAV CCTTC 2 cut(s) 292, 445
HpyCH4III ACNGT 1 cut(s) 868
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 5 cut(s) 65, 545, 760, 779, 863
HpyF10VI GCNNNNNNNGC 3 cut(s) 341, 776, 890
HpyF3I CTNAG 1 cut(s) 955
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 4 cut(s) 302, 362, 533, 898
HspAI GCGC 3 cut(s) 344, 402, 845
Ksp22I TGATCA 1 cut(s) 834
Kzo9I GATC 1 cut(s) 834
LmnI GCTCC 2 cut(s) 82, 226
LpnPI CCDG 4 cut(s) 93, 220, 833, 870
LweI GCATC 2 cut(s) 166, 596
MaeI CTAG 3 cut(s) 105, 194, 375
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 321
MalI GATC 1 cut(s) 836
MboI GATC 1 cut(s) 834
MboII GAAGA 3 cut(s) 82, 448, 582
MfeI CAATTG 1 cut(s) 60
MlyI GAGTC 2 cut(s) 212, 1010
MnlI CCTC 3 cut(s) 634, 1034, 1044
MseI TTAA 6 cut(s) 14, 90, 162, 365, 426, 630
MslI CAYNNNNRTG 2 cut(s) 45, 317
MunI CAATTG 1 cut(s) 60
Mva1269I GAATGC 3 cut(s) 79, 545, 681
MvnI CGCG 1 cut(s) 404
MwoI GCNNNNNNNGC 3 cut(s) 341, 776, 890
NdeII GATC 1 cut(s) 834
NlaIII CATG 4 cut(s) 302, 362, 533, 898
NlaIV GGNNCC 1 cut(s) 1032
NmeAIII GCCGAG 1 cut(s) 626
NmuCI GTSAC 1 cut(s) 321
NspI RCATGY 1 cut(s) 302
PaeR7I CTCGAG 1 cut(s) 460
PciI ACATGT 1 cut(s) 298
PctI GAATGC 3 cut(s) 79, 545, 681
PfeI GAWTC 4 cut(s) 109, 278, 703, 910
PleI GAGTC 2 cut(s) 211, 1009
PpsI GAGTC 2 cut(s) 211, 1009
Ppu21I YACGTR 1 cut(s) 383
PscI ACATGT 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 1032
PspXI VCTCGAGB 1 cut(s) 460
RsaI GTAC 3 cut(s) 310, 466, 852
RsaNI GTAC 3 cut(s) 309, 465, 851
RseI CAYNNNNRTG 2 cut(s) 45, 317
SaqAI TTAA 6 cut(s) 14, 90, 162, 365, 426, 630
Sau3AI GATC 1 cut(s) 834
ScaI AGTACT 1 cut(s) 466
SchI GAGTC 2 cut(s) 212, 1010
SetI ASST 7 cut(s) 337, 385, 394, 508, 636, 886, 1036
SfaNI GCATC 2 cut(s) 166, 596
Sfr274I CTCGAG 1 cut(s) 460
SlaI CTCGAG 1 cut(s) 460
SmiMI CAYNNNNRTG 2 cut(s) 45, 317
SmlI CTYRAG 3 cut(s) 326, 460, 968
SmoI CTYRAG 3 cut(s) 326, 460, 968
SsiI CCGC 1 cut(s) 733
SspMI CTAG 3 cut(s) 105, 194, 375
StyI CCWWGG 1 cut(s) 104
TaaI ACNGT 1 cut(s) 868
TaiI ACGT 1 cut(s) 385
TaqI TCGA 4 cut(s) 461, 613, 913, 925
TatI WGTACW 1 cut(s) 464
TfiI GAWTC 4 cut(s) 109, 278, 703, 910
Tru1I TTAA 6 cut(s) 14, 90, 162, 365, 426, 630
Tru9I TTAA 6 cut(s) 14, 90, 162, 365, 426, 630
TscAI CASTG 2 cut(s) 319, 564
TseFI GTSAC 1 cut(s) 321
Tsp45I GTSAC 1 cut(s) 321
TspDTI ATGAA 6 cut(s) 63, 140, 274, 467, 911, 959
TspRI CASTG 2 cut(s) 319, 564
XagI CCTNNNNNAGG 1 cut(s) 1038
XapI RAATTY 2 cut(s) 422, 915
XceI RCATGY 1 cut(s) 302
XhoI CTCGAG 1 cut(s) 460
XmaJI CCTAGG 1 cut(s) 104
XspI CTAG 3 cut(s) 105, 194, 375
ZrmI AGTACT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.