Rmu_sc0015560.1_g000001

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015560.1
OG0000122
Physical Location & Seq
Reverse (-)
237 .. 1025
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015560.1_g000001.1.cds

Sequence Viewer

Length: 789 bp
atggaaagattctttaaaagaaaatcagacatgctaccaccccttcaagatagtgtaatgtcaaagaatagtcgtgttcgggtagaaataaacttggcagatcttccttcagatcctggattaggaaccagaatttcagattacgatccgaacattcgagatcaagttcgaagagaatatctgcaaaggggtccttgtcagcccaaggaacacaaatttcttcaaaccaagtgtggagcttcgaaacaaaggtttatatctgcttggttcgatgattttcctaaatggttggaatatagtatcgacaaagatcgtgcatattgtttgtgctgcaacctatttaaagcaaatattggagaacaagcaggtggtgatgcatttactagtgatggttttcgaaattggaagaagaaagaaagattatatgatcatgttggagaccataatagtgctcataatcaagctttgaaaaattatgaaaccttgatgaatgaaggacaacacattcgaaacatcatccacaagaaggctaagcaatccagaacagattatcaaattcgactcactgcatcagttaattgcattcggtttcttctaagacaaggccttgcatttcggggccatgatgagtcagacaattcaagcaatcaaggtaactttcttgagcttttgcaatttcttgctgatcatgatgaagaagttagagctgttgcattgaaaaatgctccagaaaacctcaaaatgacatcaccaatgattcaaaaagacagtcaatgctgctgcagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

262

Amino Acids

30.31

Weight (kDa)

8.66

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 356
Acc36I ACCTGC 1 cut(s) 356
AclWI GGATC 2 cut(s) 107, 140
AcsI RAATTY 3 cut(s) 132, 215, 555
AcuI CTGAAG 1 cut(s) 93
AfiI CCNNNNNNNGG 2 cut(s) 122, 526
AgsI TTSAA 6 cut(s) 47, 224, 469, 642, 718, 761
AhlI ACTAGT 1 cut(s) 383
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 4 cut(s) 239, 464, 667, 707
AluI AGCT 4 cut(s) 239, 464, 667, 707
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 1 cut(s) 432
AlwI GGATC 2 cut(s) 107, 140
AlwNI CAGNNNCTG 1 cut(s) 116
AoxI GGCC 2 cut(s) 604, 619
ApeKI GCWGC 3 cut(s) 330, 777, 780
ApoI RAATTY 3 cut(s) 132, 215, 555
ArsI GACNNNNNNTTYG 4 cut(s) 489, 521, 754, 786
AspS9I GGNCC 2 cut(s) 191, 619
AsuHPI GGTGA 2 cut(s) 383, 741
AsuII TTCGAA 4 cut(s) 169, 242, 397, 508
AvaII GGWCC 1 cut(s) 191
Bbv12I GWGCWC 1 cut(s) 454
BbvI GCAGC 3 cut(s) 317, 764, 767
BccI CCATC 1 cut(s) 383
BciT130I CCWGG 1 cut(s) 117
BclI TGATCA 2 cut(s) 427, 685
BcoDI GTCTC 1 cut(s) 432
BcuI ACTAGT 1 cut(s) 383
BfaI CTAG 1 cut(s) 384
BfmI CTRYAG 1 cut(s) 781
BfuAI ACCTGC 1 cut(s) 356
BglII AGATCT 1 cut(s) 100
BisI GCNGC 3 cut(s) 331, 778, 781
BlpI GCTNAGC 1 cut(s) 531
BlsI GCNGC 3 cut(s) 332, 779, 782
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 2 cut(s) 191, 619
BmiI GGNNCC 3 cut(s) 127, 192, 620
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 2 cut(s) 364, 578
BpmI CTGGAG 1 cut(s) 711
Bpu1102I GCTNAGC 1 cut(s) 531
Bpu14I TTCGAA 4 cut(s) 169, 242, 397, 508
BpuEI CTTGAG 1 cut(s) 683
BsaBI GATNNNNATC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 432
BsaJI CCNNGG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 526
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 1 cut(s) 516
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 2 cut(s) 122, 526
BseXI GCAGC 3 cut(s) 317, 764, 767
BshFI GGCC 2 cut(s) 606, 621
BsiHKAI GWGCWC 1 cut(s) 454
BslI CCNNNNNNNGG 2 cut(s) 122, 526
BsmAI GTCTC 1 cut(s) 432
BsmI GAATGC 1 cut(s) 582
BsnI GGCC 2 cut(s) 606, 621
Bso31I GGTCTC 1 cut(s) 432
Bsp119I TTCGAA 4 cut(s) 169, 242, 397, 508
Bsp1286I GDGCHC 1 cut(s) 454
Bsp143I GATC 7 cut(s) 100, 112, 145, 160, 310, 427, 685
Bsp1720I GCTNAGC 1 cut(s) 531
BspANI GGCC 2 cut(s) 606, 621
BspHI TCATGA 1 cut(s) 688
BspLI GGNNCC 3 cut(s) 127, 192, 620
BspMAI CTGCAG 1 cut(s) 785
BspMI ACCTGC 1 cut(s) 356
BspPI GGATC 2 cut(s) 107, 140
BspT104I TTCGAA 4 cut(s) 169, 242, 397, 508
BspTNI GGTCTC 1 cut(s) 432
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 7 cut(s) 100, 112, 145, 160, 310, 427, 685
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 770
Bst6I CTCTTC 1 cut(s) 166
BstBI TTCGAA 4 cut(s) 169, 242, 397, 508
BstDEI CTNAG 2 cut(s) 531, 596
BstENI CCTNNNNNAGG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 516
BstKTI GATC 7 cut(s) 103, 115, 148, 163, 313, 430, 688
BstMAI GTCTC 1 cut(s) 432
BstMBI GATC 7 cut(s) 100, 112, 145, 160, 310, 427, 685
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 1 cut(s) 781
BstV1I GCAGC 3 cut(s) 317, 764, 767
BstX2I RGATCY 2 cut(s) 100, 112
BstYI RGATCY 2 cut(s) 100, 112
BsuRI GGCC 2 cut(s) 606, 621
BtsCI GGATG 1 cut(s) 516
BtsI GCAGTG 1 cut(s) 564
BtsIMutI CAGTG 1 cut(s) 564
BveI ACCTGC 1 cut(s) 356
CaiI CAGNNNCTG 1 cut(s) 116
CciI TCATGA 1 cut(s) 688
Cfr13I GGNCC 2 cut(s) 191, 619
CviAII CATG 4 cut(s) 31, 431, 623, 689
CviJI RGCY 8 cut(s) 202, 239, 464, 530, 606, 621, 667, 707
CviKI_1 RGCY 8 cut(s) 202, 239, 464, 530, 606, 621, 667, 707
DdeI CTNAG 2 cut(s) 531, 596
DpnI GATC 7 cut(s) 102, 114, 147, 162, 312, 429, 687
DpnII GATC 7 cut(s) 100, 112, 145, 160, 310, 427, 685
DraI TTTAAA 2 cut(s) 16, 343
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 204
Eco147I AGGCCT 1 cut(s) 606
Eco31I GGTCTC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 191
Eco57I CTGAAG 1 cut(s) 93
EcoNI CCTNNNNNAGG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 4 cut(s) 34, 434, 626, 692
FalI AAGNNNNNCTT 2 cut(s) 178, 210
FatI CATG 4 cut(s) 30, 430, 622, 688
FbaI TGATCA 2 cut(s) 427, 685
Fnu4HI GCNGC 3 cut(s) 331, 778, 781
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 3 cut(s) 331, 778, 781
FspBI CTAG 1 cut(s) 384
GluI GCNGC 3 cut(s) 331, 778, 781
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 2 cut(s) 606, 621
Hin1II CATG 4 cut(s) 34, 434, 626, 692
HindIII AAGCTT 1 cut(s) 462
HinfI GANTC 4 cut(s) 9, 561, 629, 757
HphI GGTGA 2 cut(s) 383, 741
Hpy188I TCNGA 5 cut(s) 28, 112, 139, 150, 634
Hpy188III TCNNGA 6 cut(s) 47, 158, 540, 662, 689, 728
HpyAV CCTTC 4 cut(s) 53, 117, 488, 520
HpyCH4III ACNGT 1 cut(s) 770
HpyF3I CTNAG 2 cut(s) 531, 596
Hsp92II CATG 4 cut(s) 34, 434, 626, 692
Ksp22I TGATCA 2 cut(s) 427, 685
Kzo9I GATC 7 cut(s) 100, 112, 145, 160, 310, 427, 685
LmnI GCTCC 2 cut(s) 236, 730
LpnPI CCDG 6 cut(s) 102, 129, 142, 351, 553, 741
Lsp1109I GCAGC 3 cut(s) 317, 764, 767
LweI GCATC 2 cut(s) 364, 578
MaeI CTAG 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 653
MalI GATC 7 cut(s) 102, 114, 147, 162, 312, 429, 687
MboI GATC 7 cut(s) 100, 112, 145, 160, 310, 427, 685
MboII GAAGA 7 cut(s) 95, 183, 212, 418, 421, 584, 707
MflI RGATCY 2 cut(s) 100, 112
MhlI GDGCHC 1 cut(s) 454
MluCI AATT 8 cut(s) 132, 215, 400, 472, 555, 577, 637, 674
MlyI GAGTC 2 cut(s) 555, 638
MmeI TCCRAC 2 cut(s) 270, 415
MnlI CCTC 1 cut(s) 746
Mph1103I ATGCAT 1 cut(s) 379
MseI TTAA 3 cut(s) 15, 342, 576
MslI CAYNNNNRTG 1 cut(s) 447
MspR9I CCNGG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 582
MvaI CCWGG 1 cut(s) 117
NdeII GATC 7 cut(s) 100, 112, 145, 160, 310, 427, 685
NlaIII CATG 4 cut(s) 34, 434, 626, 692
NlaIV GGNNCC 3 cut(s) 127, 192, 620
NsiI ATGCAT 1 cut(s) 379
NspI RCATGY 1 cut(s) 34
NspV TTCGAA 4 cut(s) 169, 242, 397, 508
PagI TCATGA 1 cut(s) 688
PaqCI CACCTGC 1 cut(s) 356
PceI AGGCCT 1 cut(s) 606
PctI GAATGC 1 cut(s) 582
PfeI GAWTC 2 cut(s) 9, 757
PfoI TCCNGGA 1 cut(s) 115
PkrI GCNGC 3 cut(s) 332, 779, 782
PleI GAGTC 2 cut(s) 555, 637
PpsI GAGTC 2 cut(s) 555, 637
PpuMI RGGWCCY 1 cut(s) 191
Psp5II RGGWCCY 1 cut(s) 191
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 3 cut(s) 127, 192, 620
PspPI GGNCC 2 cut(s) 191, 619
PspPPI RGGWCCY 1 cut(s) 191
PstI CTGCAG 1 cut(s) 785
PstNI CAGNNNCTG 1 cut(s) 116
PsuI RGATCY 2 cut(s) 100, 112
RseI CAYNNNNRTG 1 cut(s) 447
SaqAI TTAA 3 cut(s) 15, 342, 576
SatI GCNGC 3 cut(s) 331, 778, 781
Sau3AI GATC 7 cut(s) 100, 112, 145, 160, 310, 427, 685
Sau96I GGNCC 2 cut(s) 191, 619
SchI GAGTC 2 cut(s) 555, 638
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 454
SfaNI GCATC 2 cut(s) 364, 578
SfcI CTRYAG 1 cut(s) 781
SfuI TTCGAA 4 cut(s) 169, 242, 397, 508
SinI GGWCC 1 cut(s) 191
SmiMI CAYNNNNRTG 1 cut(s) 447
SmlI CTYRAG 1 cut(s) 662
SmoI CTYRAG 1 cut(s) 662
SpeI ACTAGT 1 cut(s) 383
Sse9I AATT 8 cut(s) 132, 215, 400, 472, 555, 577, 637, 674
SseBI AGGCCT 1 cut(s) 606
SspI AATATT 1 cut(s) 352
SspMI CTAG 1 cut(s) 384
StuI AGGCCT 1 cut(s) 606
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 770
TaqI TCGA 8 cut(s) 157, 169, 242, 270, 303, 397, 508, 559
TasI AATT 8 cut(s) 132, 215, 400, 472, 555, 577, 637, 674
TfiI GAWTC 2 cut(s) 9, 757
Tru1I TTAA 3 cut(s) 15, 342, 576
Tru9I TTAA 3 cut(s) 15, 342, 576
TscAI CASTG 1 cut(s) 571
TseI GCWGC 3 cut(s) 330, 777, 780
TspDTI ATGAA 4 cut(s) 492, 503, 507, 708
TspRI CASTG 1 cut(s) 571
VpaK11BI GGWCC 1 cut(s) 191
XagI CCTNNNNNAGG 1 cut(s) 120
XapI RAATTY 3 cut(s) 132, 215, 555
XceI RCATGY 1 cut(s) 34
XspI CTAG 1 cut(s) 384
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.