FvH4_3g43192

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000122
Physical Location & Seq
Reverse (-)
36074092 .. 36074796
705 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g43192.t1

Sequence Viewer

Length: 609 bp
ATGAGGGATAATGGATGGGATTCTTTACTAGATCAAGTTGTTGTGTTTTGTGGGAAAGAAAATATCATGGTTCCTAACATGAATCTCCAACTACAAGAGTTGAACAATCGTTTCAATGAGGCCAATACAGAGCTACTCCTCTGCCTTGCTTGTTTAAGTCCGAATGATACATTTTCTTGTTTTAACAAGGAACGTTTGATGCATCTTGCTCACTTATATCCGGCTGATTTTTCTACATCGGATTTGTTGATACTAGAGTCACAACTTGATATTTACATTGATGATATGCAGTCTAACTCTAAGTTTCAAAACATGCATGGAATATCTGATCTAGCACTGAAACTTGTTGAGACAAGAAAGCATAAGACTTATCAATATGCATATCTGCTCATTACCTTGGCACTAGTACTTCCAGTTGCAACAGCCACAGTTGAAAGGGCATTCTCTGCCATGAACATCATAAAGAATCGAATGCGTAATCGAATGGGAGATCAGTGGTTGAATGATAGCTTAACAGTGTACCTTGAGAAAGATGTGTTCAATGCCATTGACAATGAAGTTATAATTCAGCGATTTCAAAACATGGCACCTCGTCGAGGACAACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

203

Amino Acids

23.37

Weight (kDa)

5.35

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 563
AccB1I GGYRCC 1 cut(s) 586
AclI AACGTT 1 cut(s) 193
AfaI GTAC 2 cut(s) 408, 521
AfiI CCNNNNNNNGG 1 cut(s) 596
AgsI TTSAA 7 cut(s) 103, 115, 308, 434, 502, 541, 578
AhlI ACTAGT 1 cut(s) 403
AluBI AGCT 2 cut(s) 133, 510
AluI AGCT 2 cut(s) 133, 510
Alw26I GTCTC 1 cut(s) 344
AoxI GGCC 1 cut(s) 120
BaeI ACNNNNGTAYC 2 cut(s) 242, 275
BanI GGYRCC 1 cut(s) 586
BccI CCATC 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 344
BcuI ACTAGT 1 cut(s) 403
BfaI CTAG 4 cut(s) 29, 254, 332, 404
BfmI CTRYAG 1 cut(s) 605
BmcAI AGTACT 1 cut(s) 408
BmiI GGNNCC 2 cut(s) 72, 588
BmsI GCATC 2 cut(s) 189, 211
BpuEI CTTGAG 1 cut(s) 545
BsaJI CCNNGG 1 cut(s) 396
Bsc4I CCNNNNNNNGG 1 cut(s) 596
Bse1I ACTGG 1 cut(s) 413
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 1 cut(s) 20
BseLI CCNNNNNNNGG 1 cut(s) 596
BseNI ACTGG 1 cut(s) 413
BseRI GAGGAG 1 cut(s) 128
BshFI GGCC 1 cut(s) 122
BshNI GGYRCC 1 cut(s) 586
BsiSI CCGG 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 596
BsmAI GTCTC 1 cut(s) 344
BsmI GAATGC 2 cut(s) 440, 477
BsnI GGCC 1 cut(s) 122
Bsp143I GATC 3 cut(s) 31, 328, 490
BspANI GGCC 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 72, 588
BspT107I GGYRCC 1 cut(s) 586
BsrI ACTGG 1 cut(s) 413
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 3 cut(s) 31, 328, 490
BssT1I CCWWGG 1 cut(s) 396
Bst4CI ACNGT 2 cut(s) 430, 517
BstAPI GCANNNNNTGC 1 cut(s) 446
BstDEI CTNAG 1 cut(s) 300
BstENI CCTNNNNNAGG 1 cut(s) 594
BstF5I GGATG 1 cut(s) 20
BstKTI GATC 3 cut(s) 34, 331, 493
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 3 cut(s) 31, 328, 490
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstNSI RCATGY 1 cut(s) 316
BstSFI CTRYAG 1 cut(s) 605
BsuRI GGCC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 20
BtsIMutI CAGTG 3 cut(s) 335, 500, 522
Csp6I GTAC 2 cut(s) 407, 520
CviAII CATG 6 cut(s) 67, 79, 313, 317, 451, 583
CviJI RGCY 5 cut(s) 122, 133, 224, 425, 510
CviKI_1 RGCY 5 cut(s) 122, 133, 224, 425, 510
CviQI GTAC 2 cut(s) 407, 520
DdeI CTNAG 1 cut(s) 300
DpnI GATC 3 cut(s) 33, 330, 492
DpnII GATC 3 cut(s) 31, 328, 490
Eco130I CCWWGG 1 cut(s) 396
EcoNI CCTNNNNNAGG 1 cut(s) 594
EcoT14I CCWWGG 1 cut(s) 396
EcoT22I ATGCAT 3 cut(s) 204, 318, 382
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 6 cut(s) 70, 82, 316, 320, 454, 586
FatI CATG 6 cut(s) 66, 78, 312, 316, 450, 582
FokI GGATG 1 cut(s) 27
FspBI CTAG 4 cut(s) 29, 254, 332, 404
HaeIII GGCC 1 cut(s) 122
HapII CCGG 1 cut(s) 221
Hin1II CATG 6 cut(s) 70, 82, 316, 320, 454, 586
HinfI GANTC 4 cut(s) 20, 82, 257, 466
HpaII CCGG 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 3 cut(s) 162, 241, 328
Hpy8I GTNNAC 1 cut(s) 520
Hpy99I CGWCG 1 cut(s) 597
HpyCH4III ACNGT 2 cut(s) 430, 517
HpyCH4IV ACGT 1 cut(s) 193
HpyCH4V TGCA 5 cut(s) 202, 289, 316, 380, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 1 cut(s) 300
HpySE526I ACGT 1 cut(s) 193
Hsp92II CATG 6 cut(s) 70, 82, 316, 320, 454, 586
Kzo9I GATC 3 cut(s) 31, 328, 490
LpnPI CCDG 2 cut(s) 234, 426
LweI GCATC 2 cut(s) 189, 211
MaeI CTAG 4 cut(s) 29, 254, 332, 404
MaeII ACGT 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 258
MalI GATC 3 cut(s) 33, 330, 492
MboI GATC 3 cut(s) 31, 328, 490
MluCI AATT 1 cut(s) 564
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 1 cut(s) 112
MnlI CCTC 4 cut(s) 112, 149, 590, 600
Mph1103I ATGCAT 3 cut(s) 204, 318, 382
MseI TTAA 3 cut(s) 155, 183, 512
MspI CCGG 1 cut(s) 221
Mva1269I GAATGC 2 cut(s) 440, 477
MwoI GCNNNNNNNGC 1 cut(s) 446
NdeII GATC 3 cut(s) 31, 328, 490
NlaIII CATG 6 cut(s) 70, 82, 316, 320, 454, 586
NlaIV GGNNCC 2 cut(s) 72, 588
NmuCI GTSAC 1 cut(s) 258
NsiI ATGCAT 3 cut(s) 204, 318, 382
NspI RCATGY 1 cut(s) 316
PctI GAATGC 2 cut(s) 440, 477
PfeI GAWTC 3 cut(s) 20, 82, 466
PleI GAGTC 1 cut(s) 265
PpsI GAGTC 1 cut(s) 265
PsiI TTATAA 1 cut(s) 563
Psp1406I AACGTT 1 cut(s) 193
PspN4I GGNNCC 2 cut(s) 72, 588
RsaI GTAC 2 cut(s) 408, 521
RsaNI GTAC 2 cut(s) 407, 520
SaqAI TTAA 3 cut(s) 155, 183, 512
Sau3AI GATC 3 cut(s) 31, 328, 490
ScaI AGTACT 1 cut(s) 408
SchI GAGTC 1 cut(s) 266
SetI ASST 6 cut(s) 135, 196, 398, 512, 525, 592
SfaNI GCATC 2 cut(s) 189, 211
SfcI CTRYAG 1 cut(s) 605
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
SpeI ACTAGT 1 cut(s) 403
Sse9I AATT 1 cut(s) 564
SspMI CTAG 4 cut(s) 29, 254, 332, 404
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 430, 517
TaiI ACGT 1 cut(s) 196
TaqI TCGA 3 cut(s) 469, 481, 595
TasI AATT 1 cut(s) 564
TatI WGTACW 1 cut(s) 406
TfiI GAWTC 3 cut(s) 20, 82, 466
Tru1I TTAA 3 cut(s) 155, 183, 512
Tru9I TTAA 3 cut(s) 155, 183, 512
TscAI CASTG 3 cut(s) 342, 500, 522
TseFI GTSAC 1 cut(s) 258
Tsp45I GTSAC 1 cut(s) 258
TspDTI ATGAA 3 cut(s) 95, 467, 570
TspRI CASTG 3 cut(s) 342, 500, 522
XagI CCTNNNNNAGG 1 cut(s) 594
XceI RCATGY 1 cut(s) 316
XspI CTAG 4 cut(s) 29, 254, 332, 404
ZrmI AGTACT 1 cut(s) 408
Zsp2I ATGCAT 3 cut(s) 204, 318, 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.