Rorug04G0152600

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000122
Physical Location & Seq
Forward (+)
26743802 .. 26755641
11840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0152600.1

Sequence Viewer

Length: 2988 bp
ATGGGGGTTGTATCGAGGCGAGTTGTGCCCGCCTGCGGTAGCCTCTGTTTCTTCTGTCCCTCACTGCGTGCAAGGTCAAGGCAACCAGTCAAACGCTACAAGAAGTTGCTGGCTGAGATCTTCCCCCGTAATCAGGATGCTGAACCCAATGACAGAAAGATTGGGAAACTTTGTGAATATGCTCTGAAGAACCCATTGCGAATTCCCAAGATTACTGAGCATCTAGAGCAAAAATGTTACAAGGATTTGCGAAACGAACAGTTTGGATCTGTTAAAGTCATACTGTGCATTTATAGGAAGTTACTATCTTCCTGTAAAGTGCAGATGCCACTATTTGCAAGTAGTCTACTAGGAATTGTTCGGATTCTCTTAGAACAAACCCGACATGATGAAATGCGGATTCTGGGTTGCAATACACTTGTCGACTTTATAAATAGCCAGATTGATAGTACACACATGTTCAACCTAGAAGGCCTTATTCCTAAACTCTGTGAATTGGCTCAAGAAATGGGAGATGATGAAAGAGCTCTACGTCTACGTTCAGCTGGATTGCAATCACTGGCTTTTATGGTGTGGTTCATGGGTGAGCACTCTCATATCTCGATGGATTTTGACAATATCATATCAGTGACTATGGAAAATTACACCGATATGCATACTAAACCTGGGAGTGTGAAAGAAGACGGACAATTTTCTGAATCTCAGCACCAGTGGGTTCAAGAAGCGCTAAAAGCAGAAGTTCATGATTCATCTTTTCCAGATGTTAGTCAGAAGGTTCCTTCATTACCAAACCTAAAAACCCCTGATTTGGATCCCACAATTGATACAGACAAGAGTCCGTCTTACTGGTCAAAGGTTTGCTTGCGTAATATAGCCAGATTGGCAAAGGAAGCTACAACAGTGCGTCGAGTGCTTGAACCCCTTTTCCAAAATTTTGATGCTGCGAACCATTGGTCCCCAGAAAAACCACTTGCCTATTATGTTTTAATGTATCTGCAGTCACTATTAGAGGAATCAGGAGATAACTCTCATCTGTTATTATCCATATTGGTCAAGCACTTGGATCATAAGAATGTTGTCAAACAGCCTCGCTTGCAAACTGATATTGTAAATGTCACCACACAAATAGCACAAAGTGCAAAGCAGCAGGCATCAGTTGCGATTATTGGTGCAATATCTGACCTGATAAAGCATTTACGAAAATGCCTGCAAAATCAAGCTGAAGGGTCCAACCCTAGTAGTACAGATAAATGGAACCAAGATCTTCAGTCAGCACTAGAGAGATGCATCTCGCAACTGTCAAATAAGGTTGGAGATGTGGGGCCCATACTTGATATGATGGCTGTGGTGCTGGAGAATATCCCATCTAGTACTATTGTAGCTAGGGCGACAGTCTCTGCTGTTTATCTAACTGCAAAGATGGTCTCTTCTGTTCCAAACATATCCTATCACAAAAAGGCATTCCCTGATGCTCTGCTTCACCAGTTACTCCTAGCAATGGCCCACCTAGACCATGAAACACGTGTTGGAGCACACAGTATTTTCTCTATTGTTCTTGTGCCATCTCTACTTGTTCCTTGGCTACAGCAGAAAATGAACTCTGTGCAGACTGTTTCTGGCTTTTCATCTGTCAGTAGATTGGACTTTGTAAAGGATGGGAGTTTCTCCATTAAGGATAAAAGAAAAGACACGGGAGCAACCGCGAATGGAGAGTTGAGGGAAGAGGAAAGTCAAATATCAGATGTTTGTGAAAATCAATCTGGCAGCTTCAAGAGTGCTTTGACGGGTGGAAGAGCAGAACTACCTTCCCTTCGGTTAAGCAGTCATCAAGTGAGTCTATTGCTTTCATCAATCTGGGTTCAGGCAACATCTGCAGAGAATACCCCAGCAAATTTTGAGGCGATGGCTCATTCTTATAATGTTGCTTTACTGTTTACCCGATCAAAGGCTTCAAGTCATATGGCTTTAGTAAGATGCTTCCAGCTGGCATTCTCCATCAGGACTATTTCCTTGGATCAAGATGGGGGTTTGCAAGAATCTCGTAGAAGGTCTCTTTATACGTTGGCATCATACATGCTTATATTTGCAGCCCGGGCGGGGAACTTCCCCGAGCTAATTCCCATTGTTAAAGCATCATTGATGGATCAAATGGTTGATCCTTGTCTTCAGTTGGTTGACGATATCCGACTGCAGGCAGTTACAATTGACTCCGATATGGAGAAGCTACCCTATGGATCACAGCCAGACGAAGTTGCTGCATTGAAGTCTCATTCAGCAATTGAACTAGATGACCAATTGTTGAAAGAAACCGTGATATCCCACTTCATGACTAAATTTTCCATATTGTCAGAGGATGAATTGTCTAGCATCAAGAAGCAACTCTTACTGGGTTTTTCACCGGATGATGCATTTCCATTAGGAGCTCCACTATTCATGGAGACACCACGACCATGTTCTCCACTTGCCCATATAGATTTTGCTGATTTTGATGAGGTGATGCCTCCAGGTTCTTTGACAGACGAAGAAGCCTTCCCTGAACCTAGTGGAAGTCAGTCAGACCGCAAGACATCACTTTCCATCAACGCCCTTGACATTTTAAATGTTAATCAGCTCCTGGATTCAGTTCTAGAAACGGCCCAACAAGTTGCAAGCTTCCCAGTCTCCACAATGCCCGTACCTTATGACCAAATGAAGAGCCAATGTGAAGCCCTTGTAATGGGCAAACAGCAAAAGATGGCAGTTCTTCATAGTTTCAAGCATCAACTAGAAACCAAGGCGTTAGTGCTCTCCAATGTAAATGAAAACAAATTCCATGCTTCACCACCCATGGGATTGGAATCTTCAGAATGGGACCCAAAGGTCAAAACCAAGGAGCAAATTCAAGCGAAAAACCAGCTCCTCATATGTTCTCGTGAGTATGGACAGCATTCTTTTAAATTACCACCTTCAAGTCCTTATGACAAATTCTTGAAAGCTGCTGGGTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

995

Amino Acids

110.89

Weight (kDa)

6.24

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EFR3_ARM PF21052 65 - 151 5e-18 EFR3, armadillo repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 431, 1917
AasI GACNNNNNNGTC 1 cut(s) 2858
AccI GTMKAC 3 cut(s) 346, 423, 535
AccII CGCG 1 cut(s) 1703
AciI CCGC 6 cut(s) 30, 36, 397, 1701, 2096, 2560
AclWI GGATC 8 cut(s) 274, 806, 819, 1071, 2022, 2150, 2151, 2242
AcsI RAATTY 7 cut(s) 201, 931, 1891, 2333, 2807, 2877, 2963
AcuI CTGAAG 5 cut(s) 206, 1242, 1250, 2150, 2826
AcvI CACGTG 1 cut(s) 1523
AdeI CACNNNGTG 2 cut(s) 68, 1136
AfaI GTAC 4 cut(s) 451, 1243, 1372, 2676
AfeI AGCGCT 1 cut(s) 726
AfiI CCNNNNNNNGG 9 cut(s) 35, 133, 808, 1498, 1945, 2097, 2191, 2716, 2828
AflIII ACRYGT 3 cut(s) 456, 1520, 1522
AjnI CCWGG 3 cut(s) 664, 2503, 2613
AjuI GAANNNNNNNTTGG 2 cut(s) 1509, 1541
AloI GAACNNNNNNTCC 4 cut(s) 909, 938, 941, 970
Alw21I GWGCWC 5 cut(s) 529, 591, 1534, 2425, 2787
Alw26I GTCTC 6 cut(s) 1399, 1429, 2055, 2271, 2432, 2665
AlwI GGATC 8 cut(s) 274, 806, 819, 1071, 2022, 2150, 2151, 2242
AlwNI CAGNNNCTG 2 cut(s) 1397, 2614
Ama87I CYCGRG 2 cut(s) 2091, 2108
Aor51HI AGCGCT 1 cut(s) 726
AoxI GGCC 4 cut(s) 472, 1322, 1500, 2634
ApaI GGGCCC 1 cut(s) 1326
ApeKI GCWGC 6 cut(s) 941, 1144, 1764, 2087, 2255, 2975
ApoI RAATTY 7 cut(s) 201, 931, 1891, 2333, 2807, 2877, 2963
ArsI GACNNNNNNTTYG 2 cut(s) 938, 970
AspLEI GCGC 1 cut(s) 727
AspS9I GGNCC 7 cut(s) 954, 1227, 1322, 1323, 1501, 2635, 2851
AsuC2I CCSGG 2 cut(s) 2092, 2093
AsuHPI GGTGA 6 cut(s) 596, 1108, 1472, 2388, 2506, 2811
AvaI CYCGRG 2 cut(s) 2091, 2108
AvaII GGWCC 3 cut(s) 954, 1227, 2851
BaeGI GKGCMC 2 cut(s) 30, 1326
BamHI GGATCC 1 cut(s) 811
BanII GRGCYC 3 cut(s) 529, 1326, 2425
BauI CACGAG 1 cut(s) 2910
BbrPI CACGTG 1 cut(s) 1523
BbsI GAAGAC 2 cut(s) 687, 2156
Bbv12I GWGCWC 5 cut(s) 529, 591, 1534, 2425, 2787
BbvI GCAGC 6 cut(s) 928, 1156, 1776, 2099, 2242, 2962
BceAI ACGGC 1 cut(s) 2649
BcgI CGANNNNNNTGC 4 cut(s) 2021, 2055, 2237, 2271
BciT130I CCWGG 3 cut(s) 666, 2505, 2615
BcnI CCSGG 2 cut(s) 2092, 2093
BcoDI GTCTC 6 cut(s) 1399, 1429, 2055, 2271, 2432, 2665
BfmI CTRYAG 4 cut(s) 995, 1583, 1872, 2189
BfoI RGCGCY 1 cut(s) 728
BglI GCCNNNNNGGC 1 cut(s) 881
BglII AGATCT 2 cut(s) 117, 1261
BisI GCNGC 6 cut(s) 942, 1145, 1765, 2088, 2256, 2976
BlsI GCNGC 6 cut(s) 943, 1146, 1766, 2089, 2257, 2977
BmcAI AGTACT 1 cut(s) 1372
Bme1390I CCNGG 5 cut(s) 666, 2092, 2093, 2505, 2615
Bme18I GGWCC 3 cut(s) 954, 1227, 2851
BmeT110I CYCGRG 2 cut(s) 2091, 2108
BmgT120I GGNCC 7 cut(s) 954, 1227, 1322, 1323, 1501, 2635, 2851
BmiI GGNNCC 9 cut(s) 777, 813, 956, 1228, 1256, 1323, 1324, 2852, 2853
BmrFI CCNGG 5 cut(s) 666, 2092, 2093, 2505, 2615
BmrI ACTGGG 2 cut(s) 2396, 2651
BmuI ACTGGG 2 cut(s) 2396, 2651
BoxI GACNNNNGTC 1 cut(s) 834
BpiI GAAGAC 2 cut(s) 687, 2156
BpmI CTGGAG 2 cut(s) 1373, 2487
BpuEI CTTGAG 1 cut(s) 486
BpuMI CCSGG 2 cut(s) 2092, 2093
BsaAI YACGTR 1 cut(s) 1523
BsaBI GATNNNNATC 3 cut(s) 553, 810, 2836
BsaI GGTCTC 2 cut(s) 1429, 2055
BsaJI CCNNGG 7 cut(s) 665, 1577, 2010, 2091, 2772, 2826, 2868
BsaWI WCCGGW 1 cut(s) 2398
Bsc4I CCNNNNNNNGG 9 cut(s) 35, 133, 808, 1498, 1945, 2097, 2191, 2716, 2828
Bse1I ACTGG 7 cut(s) 86, 564, 709, 851, 1483, 2391, 2657
Bse3DI GCAATG 2 cut(s) 194, 1503
Bse8I GATNNNNATC 3 cut(s) 553, 810, 2836
BseBI CCWGG 3 cut(s) 666, 2505, 2615
BseDI CCNNGG 7 cut(s) 665, 1577, 2010, 2091, 2772, 2826, 2868
BseGI GGATG 4 cut(s) 142, 1660, 2359, 2407
BseJI GATNNNNATC 3 cut(s) 553, 810, 2836
BseLI CCNNNNNNNGG 9 cut(s) 35, 133, 808, 1498, 1945, 2097, 2191, 2716, 2828
BseMI GCAATG 2 cut(s) 194, 1503
BseMII CTCAG 3 cut(s) 105, 207, 716
BseNI ACTGG 7 cut(s) 86, 564, 709, 851, 1483, 2391, 2657
BseRI GAGGAG 1 cut(s) 2888
BseSI GKGCMC 2 cut(s) 30, 1326
BseXI GCAGC 6 cut(s) 928, 1156, 1776, 2099, 2242, 2962
BseYI CCCAGC 2 cut(s) 1885, 2978
BsgI GTGCAG 2 cut(s) 341, 1625
Bsh1236I CGCG 1 cut(s) 1703
BshFI GGCC 4 cut(s) 474, 1324, 1502, 2636
BsiHKAI GWGCWC 5 cut(s) 529, 591, 1534, 2425, 2787
BsiHKCI CYCGRG 2 cut(s) 2091, 2108
BsiSI CCGG 2 cut(s) 2092, 2399
BslFI GGGAC 3 cut(s) 42, 940, 2864
BslI CCNNNNNNNGG 9 cut(s) 35, 133, 808, 1498, 1945, 2097, 2191, 2716, 2828
BsmAI GTCTC 6 cut(s) 1399, 1429, 2055, 2271, 2432, 2665
BsmFI GGGAC 3 cut(s) 42, 940, 2864
BsmI GAATGC 3 cut(s) 1460, 1988, 2926
BsnI GGCC 4 cut(s) 474, 1324, 1502, 2636
Bso31I GGTCTC 2 cut(s) 1429, 2055
BsoBI CYCGRG 2 cut(s) 2091, 2108
Bsp120I GGGCCC 1 cut(s) 1322
Bsp1286I GDGCHC 7 cut(s) 30, 529, 591, 1326, 1534, 2425, 2787
Bsp19I CCATGG 1 cut(s) 2826
BspACI CCGC 6 cut(s) 30, 36, 397, 1701, 2096, 2560
BspANI GGCC 4 cut(s) 474, 1324, 1502, 2636
BspCNI CTCAG 3 cut(s) 106, 208, 715
BspFNI CGCG 1 cut(s) 1703
BspHI TCATGA 2 cut(s) 742, 2325
BspLI GGNNCC 9 cut(s) 777, 813, 956, 1228, 1256, 1323, 1324, 2852, 2853
BspMAI CTGCAG 3 cut(s) 999, 1876, 2193
BspPI GGATC 8 cut(s) 274, 806, 819, 1071, 2022, 2150, 2151, 2242
BspQI GCTCTTC 2 cut(s) 1786, 2687
BspTNI GGTCTC 2 cut(s) 1429, 2055
BsrDI GCAATG 2 cut(s) 194, 1503
BsrI ACTGG 7 cut(s) 86, 564, 709, 851, 1483, 2391, 2657
BssECI CCNNGG 7 cut(s) 665, 1577, 2010, 2091, 2772, 2826, 2868
BssSI CACGAG 1 cut(s) 2910
BssT1I CCWWGG 5 cut(s) 1577, 2010, 2772, 2826, 2868
Bst2BI CACGAG 1 cut(s) 2910
Bst2UI CCWGG 3 cut(s) 666, 2505, 2615
Bst4CI ACNGT 9 cut(s) 261, 285, 901, 1299, 1393, 1538, 1612, 1932, 2311
Bst6I CTCTTC 4 cut(s) 1432, 1716, 1786, 2687
BstAPI GCANNNNNTGC 3 cut(s) 1136, 1157, 1871
BstBAI YACGTR 1 cut(s) 1523
BstDEI CTNAG 4 cut(s) 114, 216, 370, 702
BstDSI CCRYGG 1 cut(s) 2826
BstF5I GGATG 4 cut(s) 142, 1660, 2359, 2407
BstFNI CGCG 1 cut(s) 1703
BstH2I RGCGCY 1 cut(s) 728
BstHHI GCGC 1 cut(s) 727
BstMAI GTCTC 6 cut(s) 1399, 1429, 2055, 2271, 2432, 2665
BstNI CCWGG 3 cut(s) 666, 2505, 2615
BstNSI RCATGY 2 cut(s) 460, 2077
BstPAI GACNNNNGTC 1 cut(s) 834
BstSCI CCNGG 5 cut(s) 664, 2090, 2091, 2503, 2613
BstSFI CTRYAG 4 cut(s) 995, 1583, 1872, 2189
BstSLI GKGCMC 2 cut(s) 30, 1326
BstUI CGCG 1 cut(s) 1703
BstV1I GCAGC 6 cut(s) 928, 1156, 1776, 2099, 2242, 2962
BstV2I GAAGAC 2 cut(s) 687, 2156
BstX2I RGATCY 4 cut(s) 117, 266, 811, 1261
BstXI CCANNNNNNTGG 1 cut(s) 2833
BstYI RGATCY 4 cut(s) 117, 266, 811, 1261
BsuRI GGCC 4 cut(s) 474, 1324, 1502, 2636
BtgI CCRYGG 1 cut(s) 2826
BtgZI GCGATG 1 cut(s) 1916
BtsCI GGATG 4 cut(s) 142, 1660, 2359, 2407
BtsI GCAGTG 1 cut(s) 62
BtsIMutI CAGTG 5 cut(s) 62, 557, 633, 716, 906
CaiI CAGNNNCTG 2 cut(s) 1397, 2614
CciI TCATGA 2 cut(s) 742, 2325
CfoI GCGC 1 cut(s) 727
Cfr13I GGNCC 7 cut(s) 954, 1227, 1322, 1323, 1501, 2635, 2851
Cfr9I CCCGGG 1 cut(s) 2091
CseI GACGC 1 cut(s) 893
Csp6I GTAC 4 cut(s) 450, 1242, 1371, 2675
CviQI GTAC 4 cut(s) 450, 1242, 1371, 2675
DdeI CTNAG 4 cut(s) 114, 216, 370, 702
DraI TTTAAA 2 cut(s) 2598, 2935
DraIII CACNNNGTG 2 cut(s) 68, 1136
DrdI GACNNNNNNGTC 1 cut(s) 2858
DseDI GACNNNNNNGTC 1 cut(s) 2858
Eam1104I CTCTTC 4 cut(s) 1432, 1716, 1786, 2687
EarI CTCTTC 4 cut(s) 1432, 1716, 1786, 2687
Ecl136II GAGCTC 2 cut(s) 527, 2423
Eco130I CCWWGG 5 cut(s) 1577, 2010, 2772, 2826, 2868
Eco147I AGGCCT 1 cut(s) 474
Eco24I GRGCYC 3 cut(s) 529, 1326, 2425
Eco31I GGTCTC 2 cut(s) 1429, 2055
Eco32I GATATC 2 cut(s) 2182, 2316
Eco47I GGWCC 3 cut(s) 954, 1227, 2851
Eco47III AGCGCT 1 cut(s) 726
Eco53kI GAGCTC 2 cut(s) 527, 2423
Eco57I CTGAAG 5 cut(s) 206, 1242, 1250, 2150, 2826
Eco72I CACGTG 1 cut(s) 1523
Eco88I CYCGRG 2 cut(s) 2091, 2108
EcoICRI GAGCTC 2 cut(s) 527, 2423
EcoO109I RGGNCCY 2 cut(s) 1322, 2851
EcoRI GAATTC 1 cut(s) 201
EcoRII CCWGG 3 cut(s) 664, 2503, 2613
EcoRV GATATC 2 cut(s) 2182, 2316
EcoT14I CCWWGG 5 cut(s) 1577, 2010, 2772, 2826, 2868
EcoT22I ATGCAT 3 cut(s) 657, 1289, 2410
EcoT38I GRGCYC 3 cut(s) 529, 1326, 2425
ErhI CCWWGG 5 cut(s) 1577, 2010, 2772, 2826, 2868
FalI AAGNNNNNCTT 4 cut(s) 845, 877, 2366, 2398
FaqI GGGAC 3 cut(s) 42, 940, 2864
FauI CCCGC 2 cut(s) 37, 2089
FauNDI CATATG 2 cut(s) 1959, 2903
FblI GTMKAC 3 cut(s) 346, 423, 535
Fnu4HI GCNGC 6 cut(s) 942, 1145, 1765, 2088, 2256, 2976
FokI GGATG 4 cut(s) 149, 1667, 2366, 2414
FriOI GRGCYC 3 cut(s) 529, 1326, 2425
Fsp4HI GCNGC 6 cut(s) 942, 1145, 1765, 2088, 2256, 2976
GlaI GCGC 1 cut(s) 726
GluI GCNGC 6 cut(s) 942, 1145, 1765, 2088, 2256, 2976
GsaI CCCAGC 2 cut(s) 1889, 2982
GsuI CTGGAG 2 cut(s) 1373, 2487
HaeII RGCGCY 1 cut(s) 728
HaeIII GGCC 4 cut(s) 474, 1324, 1502, 2636
HapII CCGG 2 cut(s) 2092, 2399
HgaI GACGC 1 cut(s) 893
HhaI GCGC 1 cut(s) 727
Hin6I GCGC 1 cut(s) 725
HinP1I GCGC 1 cut(s) 725
HincII GTYRAC 2 cut(s) 424, 2176
HindII GTYRAC 2 cut(s) 424, 2176
HindIII AAGCTT 1 cut(s) 2650
HpaII CCGG 2 cut(s) 2092, 2399
HphI GGTGA 6 cut(s) 596, 1108, 1472, 2388, 2506, 2811
Hpy166II GTNNAC 6 cut(s) 347, 424, 452, 536, 1935, 2176
Hpy8I GTNNAC 6 cut(s) 347, 424, 452, 536, 1935, 2176
Hpy99I CGWCG 1 cut(s) 909
HpyAV CCTTC 9 cut(s) 464, 766, 789, 1217, 1815, 1820, 2040, 2539, 2955
HpyCH4III ACNGT 9 cut(s) 261, 285, 901, 1299, 1393, 1538, 1612, 1932, 2311
HpyCH4IV ACGT 4 cut(s) 532, 538, 1522, 2060
HpyF3I CTNAG 4 cut(s) 114, 216, 370, 702
HpySE526I ACGT 4 cut(s) 532, 538, 1522, 2060
HspAI GCGC 1 cut(s) 725
KflI GGGWCCC 1 cut(s) 2851
LguI GCTCTTC 2 cut(s) 1786, 2687
LmnI GCTCC 7 cut(s) 1529, 1694, 2420, 2428, 2616, 2872, 2901
Lsp1109I GCAGC 6 cut(s) 928, 1156, 1776, 2099, 2242, 2962
MaeII ACGT 4 cut(s) 532, 538, 1522, 2060
MaeIII GTNAC 7 cut(s) 236, 300, 628, 999, 1114, 1485, 2197
MfeI CAATTG 4 cut(s) 819, 2202, 2277, 2294
MflI RGATCY 4 cut(s) 117, 266, 811, 1261
MhlI GDGCHC 7 cut(s) 30, 529, 591, 1326, 1534, 2425, 2787
MlyI GAGTC 3 cut(s) 844, 1843, 2201
MmeI TCCRAC 4 cut(s) 1254, 1291, 1507, 2209
Mph1103I ATGCAT 3 cut(s) 657, 1289, 2410
MseI TTAA 9 cut(s) 273, 986, 1671, 1817, 2127, 2597, 2604, 2934, 2986
MslI CAYNNNNRTG 4 cut(s) 626, 650, 1071, 2449
MspA1I CMGCKG 2 cut(s) 545, 1984
MspI CCGG 2 cut(s) 2092, 2399
MspR9I CCNGG 5 cut(s) 666, 2092, 2093, 2505, 2615
MunI CAATTG 4 cut(s) 819, 2202, 2277, 2294
Mva1269I GAATGC 3 cut(s) 1460, 1988, 2926
MvaI CCWGG 3 cut(s) 666, 2505, 2615
MvnI CGCG 1 cut(s) 1703
NciI CCSGG 2 cut(s) 2092, 2093
NcoI CCATGG 1 cut(s) 2826
NdeI CATATG 2 cut(s) 1959, 2903
NlaIV GGNNCC 9 cut(s) 777, 813, 956, 1228, 1256, 1323, 1324, 2852, 2853
NmuCI GTSAC 3 cut(s) 628, 999, 1114
NsiI ATGCAT 3 cut(s) 657, 1289, 2410
NspI RCATGY 2 cut(s) 460, 2077
PagI TCATGA 2 cut(s) 742, 2325
PceI AGGCCT 1 cut(s) 474
PciI ACATGT 1 cut(s) 456
PciSI GCTCTTC 2 cut(s) 1786, 2687
PctI GAATGC 3 cut(s) 1460, 1988, 2926
PfeI GAWTC 8 cut(s) 364, 400, 698, 746, 1013, 2036, 2618, 2837
PfoI TCCNGGA 1 cut(s) 2613
PkrI GCNGC 6 cut(s) 943, 1146, 1766, 2089, 2257, 2977
PleI GAGTC 3 cut(s) 843, 1842, 2201
PmaCI CACGTG 1 cut(s) 1523
PmlI CACGTG 1 cut(s) 1523
PpsI GAGTC 3 cut(s) 843, 1842, 2201
Ppu21I YACGTR 1 cut(s) 1523
PpuMI RGGWCCY 1 cut(s) 2851
PscI ACATGT 1 cut(s) 456
PshAI GACNNNNGTC 1 cut(s) 834
PsiI TTATAA 2 cut(s) 431, 1917
Psp124BI GAGCTC 2 cut(s) 529, 2425
Psp5II RGGWCCY 1 cut(s) 2851
Psp6I CCWGG 3 cut(s) 664, 2503, 2613
PspCI CACGTG 1 cut(s) 1523
PspFI CCCAGC 2 cut(s) 1885, 2978
PspGI CCWGG 3 cut(s) 664, 2503, 2613
PspN4I GGNNCC 9 cut(s) 777, 813, 956, 1228, 1256, 1323, 1324, 2852, 2853
PspOMI GGGCCC 1 cut(s) 1322
PspPI GGNCC 7 cut(s) 954, 1227, 1322, 1323, 1501, 2635, 2851
PspPPI RGGWCCY 1 cut(s) 2851
PstI CTGCAG 3 cut(s) 999, 1876, 2193
PstNI CAGNNNCTG 2 cut(s) 1397, 2614
PsuI RGATCY 4 cut(s) 117, 266, 811, 1261
PvuII CAGCTG 2 cut(s) 545, 1984
RsaI GTAC 4 cut(s) 451, 1243, 1372, 2676
RsaNI GTAC 4 cut(s) 450, 1242, 1371, 2675
RseI CAYNNNNRTG 4 cut(s) 626, 650, 1071, 2449
SacI GAGCTC 2 cut(s) 529, 2425
SalI GTCGAC 1 cut(s) 422
SapI GCTCTTC 2 cut(s) 1786, 2687
SaqAI TTAA 9 cut(s) 273, 986, 1671, 1817, 2127, 2597, 2604, 2934, 2986
SatI GCNGC 6 cut(s) 942, 1145, 1765, 2088, 2256, 2976
Sau96I GGNCC 7 cut(s) 954, 1227, 1322, 1323, 1501, 2635, 2851
ScaI AGTACT 1 cut(s) 1372
SchI GAGTC 3 cut(s) 844, 1843, 2201
ScrFI CCNGG 5 cut(s) 666, 2092, 2093, 2505, 2615
SduI GDGCHC 7 cut(s) 30, 529, 591, 1326, 1534, 2425, 2787
SfcI CTRYAG 4 cut(s) 995, 1583, 1872, 2189
SinI GGWCC 3 cut(s) 954, 1227, 2851
SmaI CCCGGG 1 cut(s) 2093
SmiMI CAYNNNNRTG 4 cut(s) 626, 650, 1071, 2449
SmlI CTYRAG 1 cut(s) 501
SmoI CTYRAG 1 cut(s) 501
SrfI GCCCGGGC 1 cut(s) 2093
SseBI AGGCCT 1 cut(s) 474
SsiI CCGC 6 cut(s) 30, 36, 397, 1701, 2096, 2560
SstI GAGCTC 2 cut(s) 529, 2425
StuI AGGCCT 1 cut(s) 474
StyD4I CCNGG 5 cut(s) 664, 2090, 2091, 2503, 2613
StyI CCWWGG 5 cut(s) 1577, 2010, 2772, 2826, 2868
TaaI ACNGT 9 cut(s) 261, 285, 901, 1299, 1393, 1538, 1612, 1932, 2311
TaiI ACGT 4 cut(s) 535, 541, 1525, 2063
TaqI TCGA 4 cut(s) 14, 423, 602, 907
TatI WGTACW 3 cut(s) 449, 1241, 1370
TfiI GAWTC 8 cut(s) 364, 400, 698, 746, 1013, 2036, 2618, 2837
Tru1I TTAA 9 cut(s) 273, 986, 1671, 1817, 2127, 2597, 2604, 2934, 2986
Tru9I TTAA 9 cut(s) 273, 986, 1671, 1817, 2127, 2597, 2604, 2934, 2986
TscAI CASTG 5 cut(s) 69, 564, 633, 716, 906
TseFI GTSAC 3 cut(s) 628, 999, 1114
TseI GCWGC 6 cut(s) 941, 1144, 1764, 2087, 2255, 2975
Tsp45I GTSAC 3 cut(s) 628, 999, 1114
TspGWI ACGGA 2 cut(s) 699, 828
TspMI CCCGGG 1 cut(s) 2091
TspRI CASTG 5 cut(s) 69, 564, 633, 716, 906
VpaK11BI GGWCC 3 cut(s) 954, 1227, 2851
XapI RAATTY 7 cut(s) 201, 931, 1891, 2333, 2807, 2877, 2963
XbaI TCTAGA 2 cut(s) 223, 2626
XceI RCATGY 2 cut(s) 460, 2077
XmaI CCCGGG 1 cut(s) 2091
XmiI GTMKAC 3 cut(s) 346, 423, 535
ZrmI AGTACT 1 cut(s) 1372
Zsp2I ATGCAT 3 cut(s) 657, 1289, 2410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.