Rroxscaffold_3G00247310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000122
Physical Location & Seq
Forward (+)
40662540 .. 40663264
725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247310.1

Sequence Viewer

Length: 285 bp
ATGAGTCTCATCTCTCAACCTTATTCAGATCAACCTCAAAATCCTAAGCCACGAAAAGTTCGTAAGAAAGTAAATTCATATTTTCTGAAAAATGATGTTGTTATGGGTGATATTCCAAGTTCGGTTGTGGAAGAACCTTCTTGTTCCGTACGAGTTGAGTCTCATGAAATTGATGTTAATCACATTGAACGTGATCCGGAAAACTCCCCGCAATCTCGTCATATCCTATTAATGAGCGTGATGAAGTTCGAAGAAAATATATACTTTATGGTTCGAAGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

11.02

Weight (kDa)

7.9

Isoelectric Point (pI)

89.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 196
AciI CCGC 1 cut(s) 209
AclWI GGATC 1 cut(s) 188
AcsI RAATTY 1 cut(s) 73
AfaI GTAC 1 cut(s) 150
AgsI TTSAA 1 cut(s) 188
Alw26I GTCTC 2 cut(s) 11, 165
AlwI GGATC 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 196
ApoI RAATTY 1 cut(s) 73
AseI ATTAAT 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 119
AsuII TTCGAA 2 cut(s) 249, 274
BcoDI GTCTC 2 cut(s) 11, 165
Bpu10I CCTNAGC 1 cut(s) 45
Bpu14I TTCGAA 2 cut(s) 249, 274
BsaBI GATNNNNATC 1 cut(s) 177
BsaWI WCCGGW 1 cut(s) 196
Bse8I GATNNNNATC 1 cut(s) 177
BseAI TCCGGA 1 cut(s) 196
BseJI GATNNNNATC 1 cut(s) 177
BsiSI CCGG 1 cut(s) 197
BsiWI CGTACG 1 cut(s) 148
BsmAI GTCTC 2 cut(s) 11, 165
Bsp119I TTCGAA 2 cut(s) 249, 274
Bsp13I TCCGGA 1 cut(s) 196
Bsp143I GATC 2 cut(s) 28, 193
BspACI CCGC 1 cut(s) 209
BspEI TCCGGA 1 cut(s) 196
BspHI TCATGA 1 cut(s) 163
BspPI GGATC 1 cut(s) 188
BspT104I TTCGAA 2 cut(s) 249, 274
BssMI GATC 2 cut(s) 28, 193
BstBI TTCGAA 2 cut(s) 249, 274
BstDEI CTNAG 1 cut(s) 45
BstKTI GATC 2 cut(s) 31, 196
BstMAI GTCTC 2 cut(s) 11, 165
BstMBI GATC 2 cut(s) 28, 193
CciI TCATGA 1 cut(s) 163
Csp6I GTAC 1 cut(s) 149
CviAII CATG 1 cut(s) 164
CviJI RGCY 1 cut(s) 49
CviKI_1 RGCY 1 cut(s) 49
CviQI GTAC 1 cut(s) 149
DdeI CTNAG 1 cut(s) 45
DpnI GATC 2 cut(s) 30, 195
DpnII GATC 2 cut(s) 28, 193
FaeI CATG 1 cut(s) 167
FaiI YATR 7 cut(s) 79, 104, 165, 222, 260, 262, 269
FatI CATG 1 cut(s) 163
FauI CCCGC 1 cut(s) 216
HapII CCGG 1 cut(s) 197
Hin1II CATG 1 cut(s) 167
HinfI GANTC 2 cut(s) 4, 158
HpaII CCGG 1 cut(s) 197
HphI GGTGA 1 cut(s) 119
Hpy188I TCNGA 2 cut(s) 28, 87
Hpy188III TCNNGA 2 cut(s) 164, 197
HpyAV CCTTC 1 cut(s) 147
HpyCH4IV ACGT 1 cut(s) 190
HpyF3I CTNAG 1 cut(s) 45
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 1 cut(s) 167
Kpn2I TCCGGA 1 cut(s) 196
Kzo9I GATC 2 cut(s) 28, 193
LpnPI CCDG 1 cut(s) 210
MaeII ACGT 1 cut(s) 190
MalI GATC 2 cut(s) 30, 195
MboI GATC 2 cut(s) 28, 193
MboII GAAGA 2 cut(s) 143, 263
MluCI AATT 2 cut(s) 73, 168
MlyI GAGTC 2 cut(s) 13, 167
MnlI CCTC 1 cut(s) 45
MroI TCCGGA 1 cut(s) 196
MseI TTAA 2 cut(s) 177, 230
MspI CCGG 1 cut(s) 197
NdeII GATC 2 cut(s) 28, 193
NlaIII CATG 1 cut(s) 167
NspV TTCGAA 2 cut(s) 249, 274
PagI TCATGA 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 58
Pfl23II CGTACG 1 cut(s) 148
PleI GAGTC 2 cut(s) 12, 166
PpsI GAGTC 2 cut(s) 12, 166
PshBI ATTAAT 1 cut(s) 230
PspLI CGTACG 1 cut(s) 148
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
SaqAI TTAA 2 cut(s) 177, 230
Sau3AI GATC 2 cut(s) 28, 193
SchI GAGTC 2 cut(s) 13, 167
SetI ASST 4 cut(s) 22, 37, 139, 193
SfuI TTCGAA 2 cut(s) 249, 274
Sse9I AATT 2 cut(s) 73, 168
SsiI CCGC 1 cut(s) 209
TaiI ACGT 1 cut(s) 193
TaqI TCGA 2 cut(s) 249, 274
TasI AATT 2 cut(s) 73, 168
Tru1I TTAA 2 cut(s) 177, 230
Tru9I TTAA 2 cut(s) 177, 230
TspDTI ATGAA 3 cut(s) 66, 180, 257
TspGWI ACGGA 1 cut(s) 136
VspI ATTAAT 1 cut(s) 230
XapI RAATTY 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.