Rmu_sc0003382.1_g000010

Zinc finger MYM-type protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003382.1
Physical Location & Seq
Reverse (-)
63843 .. 65108
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003382.1_g000010.1.cds

Sequence Viewer

Length: 837 bp
atgaggtacaaaaatcttttgtcatggtttacaagtggtactccatcaagtgatagtgtcgatgagattagaagtgggagtgggagtgggagtagaaatgtgactgagaattctgttaatgatgtccctttaaacccttctccatctattccactagaagagtgtcataatgaaagaattgagagagaagaaagttttgatgttagttctctagaacatgatccaggaatacggcgtccaatatgcaagtaccctttgaatgagagtgacaatattcgaagagcttatgtggtcttaggaccaggccatgatgaatcggttaattcgtctagtggtggaaatttcaatgcggttgtggattcctttggaagaatgaatatagatattcgcagagtcttacaaaatgctcctgggaatgccaagtatacttctcccattattcaaaaacaaattttaaatatacttggtaacaaagttagaaccaagattcgggaggaagtgggagatgccaaattttgtatccttgttgatgaagctgttgatgtatctaatagggaacaaatggctatcattcttcgatttgttgattgtgatgggtttattagagaacggtttttcaaagtgcttagtgtggcagacacttgttctcaaactctaaaagatgagatatccaaagttcttactcaatatgatcttcaagtagaaaatatgcgtgggcaaggatatgatggtgctagcaatatgcggggtgaatttaatggtttacaagctttgtttcgtgaagagtgtccatatgcatatattatgttcattgttttgctcatcgcttacaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

278

Amino Acids

31.23

Weight (kDa)

5.1

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G19260 AT1G41920 AT1G42710 AT2G06541 AT2G06541 AT3G29450 AT3G29763 AT3G29765 AT3G31402 AT3G31402 AT4G09660
fragaria_vesca FvH4_1g22711 FvH4_3g10612 FvH4_3g23261 FvH4_3g31623 FvH4_3g33391 FvH4_3g37321 FvH4_3g43192 FvH4_3g43193 FvH4_4g00181 FvH4_4g00251 FvH4_4g08751 FvH4_4g15271 FvH4_5g27190 FvH4_6g02122 FvH4_6g26880 FvH4_6g35121 FvH4_7g16871 FvH4_7g19080 FvH4_7g30071
malus_domestica MD02G1162100.v1.1 MD03G1081700.v1.1 MD09G1280500.v1.1 MD12G1083800.v1.1 MD12G1128200.v1.1
prunus_persica Prupe.7G129800_v2.0.a1
pyrus_communis pycom01g08000 pycom02g13840 pycom02g18030 pycom04g01290 pycom04g12580 pycom05g02550 pycom05g06740 pycom05g26200 pycom07g09850 pycom08g10610 pycom10g11280 pycom11g12580 pycom11g22260 pycom12g18440 pycom13g20080 pycom15g25600 pycom16g23600 pycom17g10070
rosa_chinensis RchiOBHm_Chr1g0313551 RchiOBHm_Chr1g0364331 RchiOBHm_Chr1g0369741 RchiOBHm_Chr1g0380371 RchiOBHm_Chr2g0097391 RchiOBHm_Chr2g0113561 RchiOBHm_Chr2g0114151 RchiOBHm_Chr2g0119761 RchiOBHm_Chr2g0149851 RchiOBHm_Chr2g0151931 RchiOBHm_Chr2g0166411 RchiOBHm_Chr3g0453661 RchiOBHm_Chr3g0466101 RchiOBHm_Chr3g0477911 RchiOBHm_Chr3g0486441 RchiOBHm_Chr4g0390161 RchiOBHm_Chr4g0392191 RchiOBHm_Chr4g0414461 RchiOBHm_Chr4g0421421 RchiOBHm_Chr5g0023801 RchiOBHm_Chr5g0040121 RchiOBHm_Chr5g0045381 RchiOBHm_Chr5g0061511 RchiOBHm_Chr5g0062621 RchiOBHm_Chr5g0064161 RchiOBHm_Chr5g0068711 RchiOBHm_Chr6g0246041 RchiOBHm_Chr6g0252511 RchiOBHm_Chr6g0252521 RchiOBHm_Chr6g0263361 RchiOBHm_Chr6g0269451 RchiOBHm_Chr6g0275351 RchiOBHm_Chr6g0288481 RchiOBHm_Chr6g0310011 RchiOBHm_Chr6g0310021 RchiOBHm_Chr7g0223071 RchiOBHm_Chr7g0227621 RchiOBHm_Chr7g0242581
rosa_laevigata RLG00000033957
rosa_multiflora Rmu_co8455865.1_g000001 Rmu_sc0000021.1_g000011 Rmu_sc0000079.1_g000049 Rmu_sc0000087.1_g000015 Rmu_sc0000151.1_g000008 Rmu_sc0000365.1_g000014 Rmu_sc0000446.1_g000054 Rmu_sc0000446.1_g000055 Rmu_sc0000534.1_g000006 Rmu_sc0000724.1_g000020 Rmu_sc0000859.1_g000001 Rmu_sc0000876.1_g000002 Rmu_sc0000881.1_g000005 Rmu_sc0000929.1_g000014 Rmu_sc0001112.1_g000004 Rmu_sc0001136.1_g000009 Rmu_sc0001353.1_g000064 Rmu_sc0001662.1_g000005 Rmu_sc0001764.1_g000006 Rmu_sc0001982.1_g000015 Rmu_sc0002052.1_g000008 Rmu_sc0002052.1_g000009 Rmu_sc0002158.1_g000011 Rmu_sc0002285.1_g000005 Rmu_sc0002983.1_g000025 Rmu_sc0003063.1_g000006 Rmu_sc0003076.1_g000005 Rmu_sc0003221.1_g000053 Rmu_sc0003382.1_g000010 Rmu_sc0003733.1_g000054 Rmu_sc0003997.1_g000005 Rmu_sc0004283.1_g000008 Rmu_sc0004283.1_g000053 Rmu_sc0004509.1_g000007 Rmu_sc0004540.1_g000028 Rmu_sc0004657.1_g000005 Rmu_sc0004935.1_g000006 Rmu_sc0005072.1_g000003 Rmu_sc0005248.1_g000001 Rmu_sc0006161.1_g000001 Rmu_sc0006209.1_g000005 Rmu_sc0006576.1_g000018 Rmu_sc0006576.1_g000019 Rmu_sc0007121.1_g000016 Rmu_sc0007121.1_g000032 Rmu_sc0007753.1_g000016 Rmu_sc0007795.1_g000009 Rmu_sc0007841.1_g000019 Rmu_sc0008339.1_g000021 Rmu_sc0008339.1_g000022 Rmu_sc0008432.1_g000001 Rmu_sc0008633.1_g000009 Rmu_sc0009104.1_g000013 Rmu_sc0011469.1_g000001 Rmu_sc0012039.1_g000001 Rmu_sc0013947.1_g000007 Rmu_sc0015560.1_g000001 Rmu_sc0017369.1_g000001 Rmu_sc0021648.1_g000001 Rmu_sc0022867.1_g000003 Rmu_sc0027801.1_g000001 Rmu_sc0027801.1_g000002 Rmu_sc0029861.1_g000001 Rmu_sc0030314.1_g000001 Rmu_sc0040149.1_g000001 Rmu_ssc0000089.1_g000028 Rmu_ssc0000480.1_g000033
rosa_roxburghii Rroxscaffold_1G00002540 Rroxscaffold_1G00013960 Rroxscaffold_1G00041160 Rroxscaffold_1G00045580 Rroxscaffold_3G00247310 Rroxscaffold_3G00267070 Rroxscaffold_4G00313830 Rroxscaffold_5G00372270 Rroxscaffold_6G00404800 Rroxscaffold_6G00406090
rosa_rugosa Rorug03G0269800 Rorug04G0142900 Rorug04G0152600 Rorug05G0223300.1 Rorug05G0266400 Rorug06G0008900 Rorug07G0086000 Rorug07G0205800 Rorug07G0270900
rosa_wichuraiana Rw0G001600 Rw0G017220 Rw0G017620 Rw0G018380 Rw1G002320 Rw1G020940 Rw1G021200 Rw1G022610 Rw1G038680 Rw2G013320 Rw2G016850 Rw2G024020 Rw2G025210 Rw2G032270 Rw2G039490 Rw2G041630 Rw2G048450 Rw2G051510 Rw3G025320 Rw4G003260 Rw4G007300 Rw4G009290 Rw4G010910 Rw4G013260 Rw5G008190 Rw5G008290 Rw5G018740 Rw5G023640 Rw5G028800 Rw5G031830 Rw5G041280 Rw5G044050 Rw6G007060 Rw6G008230 Rw6G009960 Rw6G013460 Rw6G014610 Rw6G017780 Rw6G033200 Rw7G021340 Rw7G023750 Rw7G032290 Rw7G032450 Rw7G033880 Rw7G038580 Rw7G040180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 425
AciI CCGC 2 cut(s) 350, 745
AclWI GGATC 1 cut(s) 215
AcsI RAATTY 5 cut(s) 109, 340, 450, 512, 752
AcyI GRCGYC 1 cut(s) 235
AfaI GTAC 3 cut(s) 8, 40, 251
AfiI CCNNNNNNNGG 1 cut(s) 489
AgsI TTSAA 5 cut(s) 259, 346, 443, 619, 698
AjnI CCWGG 3 cut(s) 223, 301, 409
AluBI AGCT 3 cut(s) 284, 536, 770
AluI AGCT 3 cut(s) 284, 536, 770
AlwI GGATC 1 cut(s) 215
AoxI GGCC 1 cut(s) 304
ApoI RAATTY 5 cut(s) 109, 340, 450, 512, 752
AspS9I GGNCC 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 761
AsuII TTCGAA 1 cut(s) 277
AsuNHI GCTAGC 1 cut(s) 734
AvaII GGWCC 1 cut(s) 299
BccI CCATC 4 cut(s) 52, 151, 587, 722
BceAI ACGGC 1 cut(s) 248
BciT130I CCWGG 3 cut(s) 225, 303, 411
BciVI GTATCC 1 cut(s) 530
BfaI CTAG 4 cut(s) 155, 212, 330, 735
BfuI GTATCC 1 cut(s) 530
Bme1390I CCNGG 3 cut(s) 225, 303, 411
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 1 cut(s) 299
BmrFI CCNGG 3 cut(s) 225, 303, 411
BmsI GCATC 1 cut(s) 496
BmtI GCTAGC 1 cut(s) 738
Bpu14I TTCGAA 1 cut(s) 277
BsaHI GRCGYC 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 410
BsaXI ACNNNNNCTCC 4 cut(s) 70, 76, 100, 106
Bsc4I CCNNNNNNNGG 1 cut(s) 489
BseBI CCWGG 3 cut(s) 225, 303, 411
BseDI CCNNGG 1 cut(s) 410
BseLI CCNNNNNNNGG 1 cut(s) 489
BseMII CTCAG 1 cut(s) 96
BshFI GGCC 1 cut(s) 306
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 489
BsmFI GGGAC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 421
BsnI GGCC 1 cut(s) 306
Bsp119I TTCGAA 1 cut(s) 277
Bsp143I GATC 2 cut(s) 220, 691
BspACI CCGC 2 cut(s) 350, 745
BspANI GGCC 1 cut(s) 306
BspCNI CTCAG 1 cut(s) 97
BspOI GCTAGC 1 cut(s) 738
BspPI GGATC 1 cut(s) 215
BspQI GCTCTTC 1 cut(s) 274
BspT104I TTCGAA 1 cut(s) 277
BssECI CCNNGG 1 cut(s) 410
BssMI GATC 2 cut(s) 220, 691
BssNAI GTATAC 1 cut(s) 426
BssNI GRCGYC 1 cut(s) 235
Bst1107I GTATAC 1 cut(s) 426
Bst2UI CCWGG 3 cut(s) 225, 303, 411
Bst4CI ACNGT 1 cut(s) 612
Bst6I CTCTTC 3 cut(s) 153, 274, 777
BstACI GRCGYC 1 cut(s) 235
BstBI TTCGAA 1 cut(s) 277
BstC8I GCNNGC 1 cut(s) 736
BstDEI CTNAG 3 cut(s) 105, 295, 626
BstKTI GATC 2 cut(s) 223, 694
BstMBI GATC 2 cut(s) 220, 691
BstNI CCWGG 3 cut(s) 225, 303, 411
BstSCI CCNGG 3 cut(s) 223, 301, 409
BstZ17I GTATAC 1 cut(s) 426
BsuI GTATCC 1 cut(s) 530
BsuRI GGCC 1 cut(s) 306
BtgZI GCGATG 1 cut(s) 808
Cac8I GCNNGC 1 cut(s) 736
Cfr13I GGNCC 1 cut(s) 299
CseI GACGC 1 cut(s) 224
Csp6I GTAC 3 cut(s) 7, 39, 250
CviAII CATG 3 cut(s) 24, 218, 308
CviJI RGCY 5 cut(s) 284, 306, 536, 566, 770
CviKI_1 RGCY 5 cut(s) 284, 306, 536, 566, 770
CviQI GTAC 3 cut(s) 7, 39, 250
DdeI CTNAG 3 cut(s) 105, 295, 626
DpnI GATC 2 cut(s) 222, 693
DpnII GATC 2 cut(s) 220, 691
DraI TTTAAA 2 cut(s) 132, 456
Eam1104I CTCTTC 3 cut(s) 153, 274, 777
EarI CTCTTC 3 cut(s) 153, 274, 777
Eco32I GATATC 1 cut(s) 669
Eco47I GGWCC 1 cut(s) 299
EcoRI GAATTC 1 cut(s) 109
EcoRII CCWGG 3 cut(s) 223, 301, 409
EcoRV GATATC 1 cut(s) 669
EcoT22I ATGCAT 1 cut(s) 799
FaeI CATG 3 cut(s) 27, 221, 311
FaqI GGGAC 1 cut(s) 110
FatI CATG 3 cut(s) 23, 217, 307
FauI CCCGC 1 cut(s) 738
FauNDI CATATG 1 cut(s) 793
FblI GTMKAC 1 cut(s) 425
FspBI CTAG 4 cut(s) 155, 212, 330, 735
HaeIII GGCC 1 cut(s) 306
HgaI GACGC 1 cut(s) 224
Hin1I GRCGYC 1 cut(s) 235
Hin1II CATG 3 cut(s) 27, 221, 311
HindIII AAGCTT 1 cut(s) 768
HinfI GANTC 4 cut(s) 314, 359, 393, 487
HphI GGTGA 1 cut(s) 761
Hpy166II GTNNAC 3 cut(s) 30, 426, 764
Hpy188III TCNNGA 3 cut(s) 212, 491, 779
Hpy8I GTNNAC 3 cut(s) 30, 426, 764
HpyAV CCTTC 1 cut(s) 147
HpyCH4III ACNGT 1 cut(s) 612
HpyCH4V TGCA 2 cut(s) 246, 797
HpyF3I CTNAG 3 cut(s) 105, 295, 626
Hsp92I GRCGYC 1 cut(s) 235
Hsp92II CATG 3 cut(s) 27, 221, 311
Kzo9I GATC 2 cut(s) 220, 691
LguI GCTCTTC 1 cut(s) 274
LmnI GCTCC 1 cut(s) 412
LpnPI CCDG 6 cut(s) 210, 237, 288, 315, 396, 423
LweI GCATC 1 cut(s) 496
MaeI CTAG 4 cut(s) 155, 212, 330, 735
MaeIII GTNAC 3 cut(s) 100, 266, 467
MalI GATC 2 cut(s) 222, 693
MboI GATC 2 cut(s) 220, 691
MboII GAAGA 7 cut(s) 170, 200, 291, 381, 566, 686, 794
MfeI CAATTG 1 cut(s) 832
MluCI AATT 8 cut(s) 109, 177, 322, 340, 450, 512, 752, 832
MlyI GAGTC 1 cut(s) 402
MnlI CCTC 1 cut(s) 487
Mph1103I ATGCAT 1 cut(s) 799
MseI TTAA 5 cut(s) 117, 131, 321, 455, 756
MspR9I CCNGG 3 cut(s) 225, 303, 411
MunI CAATTG 1 cut(s) 832
Mva1269I GAATGC 1 cut(s) 421
MvaI CCWGG 3 cut(s) 225, 303, 411
NdeI CATATG 1 cut(s) 793
NdeII GATC 2 cut(s) 220, 691
NheI GCTAGC 1 cut(s) 734
NlaIII CATG 3 cut(s) 27, 221, 311
NmuCI GTSAC 2 cut(s) 100, 266
NsiI ATGCAT 1 cut(s) 799
NspV TTCGAA 1 cut(s) 277
PciSI GCTCTTC 1 cut(s) 274
PcsI WCGNNNNNNNCGW 1 cut(s) 323
PctI GAATGC 1 cut(s) 421
PfeI GAWTC 3 cut(s) 314, 359, 487
PfoI TCCNGGA 1 cut(s) 223
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
Psp6I CCWGG 3 cut(s) 223, 301, 409
PspGI CCWGG 3 cut(s) 223, 301, 409
PspPI GGNCC 1 cut(s) 299
RsaI GTAC 3 cut(s) 8, 40, 251
RsaNI GTAC 3 cut(s) 7, 39, 250
SapI GCTCTTC 1 cut(s) 274
SaqAI TTAA 5 cut(s) 117, 131, 321, 455, 756
Sau3AI GATC 2 cut(s) 220, 691
Sau96I GGNCC 1 cut(s) 299
SchI GAGTC 1 cut(s) 402
ScrFI CCNGG 3 cut(s) 225, 303, 411
SetI ASST 4 cut(s) 8, 286, 538, 772
SfaNI GCATC 1 cut(s) 496
SfuI TTCGAA 1 cut(s) 277
SinI GGWCC 1 cut(s) 299
Sse9I AATT 8 cut(s) 109, 177, 322, 340, 450, 512, 752, 832
SsiI CCGC 2 cut(s) 350, 745
SspI AATATT 1 cut(s) 274
SspMI CTAG 4 cut(s) 155, 212, 330, 735
StyD4I CCNGG 3 cut(s) 223, 301, 409
TaaI ACNGT 1 cut(s) 612
TaqI TCGA 3 cut(s) 60, 277, 577
TasI AATT 8 cut(s) 109, 177, 322, 340, 450, 512, 752, 832
TfiI GAWTC 3 cut(s) 314, 359, 487
Tru1I TTAA 5 cut(s) 117, 131, 321, 455, 756
Tru9I TTAA 5 cut(s) 117, 131, 321, 455, 756
TseFI GTSAC 2 cut(s) 100, 266
Tsp45I GTSAC 2 cut(s) 100, 266
TspDTI ATGAA 5 cut(s) 186, 327, 389, 546, 799
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 5 cut(s) 109, 340, 450, 512, 752
XbaI TCTAGA 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 425
XspI CTAG 4 cut(s) 155, 212, 330, 735
Zsp2I ATGCAT 1 cut(s) 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.